Gvermi12784.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12784.t1
Unique NameGvermi12784.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length448
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1511165..1512508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog248742.XP_005647813.1
PFAMs2-Hacid_dh,2-Hacid_dh_C
Max annot lvl3041|Chlorophyta
KEGG rclassRC00031
KEGG koko:K00058
KEGG ReactionR01513
KEGG Pathwayko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230
KEGG ModuleM00020
Evalue2.12e-167
EggNOG OGsCOG0111@1|root,KOG0068@2759|Eukaryota,37YAY@33090|Viridiplantae,34JHT@3041|Chlorophyta
EC1.1.1.399,1.1.1.95
DescriptionBelongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12784Gvermi12784Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1511165..1512508 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12784.t1.start1Gvermi12784.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1511165..1511167 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12784.t1.CDS1Gvermi12784.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1511165..1512508 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12784.t1.exon1Gvermi12784.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1511165..1512508 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12784.t1.stop1Gvermi12784.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1512506..1512508 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12784.t1Gvermi12784.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1511165..1512508 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12784.t1 ID=Gvermi12784.t1|Name=Gvermi12784.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=448bp
MDRYSPEAISRLRTSAPRAPILAASPVESFMVAVPQLSFRKSKVRVLVLE
NIHKSAVDGFKSETFDVDTVPKALLEHELIDRIRGVHLLCIRSKTKVTRS
VLEAADKLLAIGCFCIGTDQVDLVAAEEHGVPVFNAPFSNTRSVAELVIG
EIIALSRNLSDKSRDAHQGIWSKSAKGCSEVRGKVLGIIGYGHIGSQLSV
LAEGLGMQVIYYDVVSVLPIGNGRAVGSMDELLENADFVSLHVPKAPSTN
NLITATEIAKMKKGSYLINASRGTVVDIEALACALKEEHLSGAAIDVFPS
EPAKNGPGFKSPLCGLENVILTPHIGGSTGEAQRNIGVEVSTALIKYVNL
GTTIGAVNFPNLDMPIGTDCHRILNVHRILNVHQNVPGVLTAINSILSDT
KSNVASQMLGTSAKIGYIIIDLNKETSGETKAAISDLETSISTRILF*
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spliced messenger RNA

>Gvermi12784.t1 ID=Gvermi12784.t1|Name=Gvermi12784.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1344bp|location=Sequence derived from alignment at ScGOVlb_425:1511165..1512508+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAGGTATTCTCCTGAAGCAATATCACGTCTCAGAACATCCGCACC
GCGCGCACCTATTTTGGCTGCTTCTCCAGTTGAATCCTTCATGGTTGCCG
TACCGCAGTTATCGTTCCGTAAGTCCAAGGTCAGAGTGCTTGTCTTGGAG
AACATTCATAAATCAGCCGTTGATGGTTTTAAGTCAGAAACGTTTGATGT
GGACACAGTACCGAAAGCGTTGCTGGAGCATGAGCTAATCGACCGCATCC
GGGGCGTTCACCTCCTGTGCATCAGGTCGAAGACCAAAGTGACTAGATCA
GTGTTAGAAGCGGCGGACAAGCTGCTCGCAATCGGATGTTTTTGTATTGG
AACTGATCAGGTTGACCTTGTCGCTGCCGAGGAGCACGGTGTTCCTGTAT
TTAATGCTCCGTTCTCGAACACTAGGTCCGTTGCCGAGCTTGTAATCGGT
GAGATCATAGCTCTTTCTCGAAACTTGTCCGACAAGTCGCGCGATGCCCA
TCAGGGTATCTGGAGCAAGAGCGCTAAGGGTTGTTCTGAAGTTCGAGGCA
AAGTACTCGGTATTATTGGATACGGACATATAGGGTCGCAGTTGTCTGTT
CTGGCAGAAGGATTGGGTATGCAAGTAATTTACTACGACGTTGTTTCCGT
GCTGCCTATCGGTAATGGTAGAGCAGTGGGCTCGATGGATGAACTTCTCG
AAAACGCTGATTTCGTATCACTGCATGTGCCAAAGGCCCCTTCGACAAAC
AATTTGATTACTGCGACTGAAATAGCGAAGATGAAGAAAGGCTCATACCT
AATCAATGCCTCTCGAGGGACAGTAGTGGACATTGAGGCGCTGGCCTGTG
CTTTGAAAGAAGAGCACTTGAGCGGCGCGGCCATTGATGTATTCCCCTCC
GAACCGGCGAAGAACGGACCCGGCTTCAAGTCGCCGCTGTGTGGTCTGGA
GAATGTGATCCTCACTCCTCACATTGGTGGATCAACTGGTGAAGCGCAAC
GAAATATTGGTGTTGAAGTGTCCACGGCTTTAATCAAATATGTGAATCTT
GGAACTACGATTGGGGCTGTGAACTTCCCGAACCTGGACATGCCAATTGG
CACCGACTGTCATAGGATTCTCAACGTGCATAGGATTCTGAACGTGCACC
AAAACGTGCCTGGTGTTCTGACGGCGATAAACTCCATTTTGTCCGACACG
AAGAGCAACGTTGCTTCCCAAATGTTGGGCACTTCCGCCAAGATTGGCTA
TATAATCATTGACCTCAACAAGGAAACCAGTGGGGAGACCAAAGCGGCTA
TCTCTGATCTGGAAACTTCAATATCTACGCGAATTCTGTTTTAA
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protein sequence of Gvermi12784.t1

>Gvermi12784.t1 ID=Gvermi12784.t1|Name=Gvermi12784.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=448bp
MDRYSPEAISRLRTSAPRAPILAASPVESFMVAVPQLSFRKSKVRVLVLE
NIHKSAVDGFKSETFDVDTVPKALLEHELIDRIRGVHLLCIRSKTKVTRS
VLEAADKLLAIGCFCIGTDQVDLVAAEEHGVPVFNAPFSNTRSVAELVIG
EIIALSRNLSDKSRDAHQGIWSKSAKGCSEVRGKVLGIIGYGHIGSQLSV
LAEGLGMQVIYYDVVSVLPIGNGRAVGSMDELLENADFVSLHVPKAPSTN
NLITATEIAKMKKGSYLINASRGTVVDIEALACALKEEHLSGAAIDVFPS
EPAKNGPGFKSPLCGLENVILTPHIGGSTGEAQRNIGVEVSTALIKYVNL
GTTIGAVNFPNLDMPIGTDCHRILNVHRILNVHQNVPGVLTAINSILSDT
KSNVASQMLGTSAKIGYIIIDLNKETSGETKAAISDLETSISTRILF*
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mRNA from alignment at ScGOVlb_425:1511165..1512508+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12784.t1 ID=Gvermi12784.t1|Name=Gvermi12784.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1344bp|location=Sequence derived from alignment at ScGOVlb_425:1511165..1512508+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACAGGTATTCTCCTGAAGCAATATCACGTCTCAGAACATCCGCACC
GCGCGCACCTATTTTGGCTGCTTCTCCAGTTGAATCCTTCATGGTTGCCG
TACCGCAGTTATCGTTCCGTAAGTCCAAGGTCAGAGTGCTTGTCTTGGAG
AACATTCATAAATCAGCCGTTGATGGTTTTAAGTCAGAAACGTTTGATGT
GGACACAGTACCGAAAGCGTTGCTGGAGCATGAGCTAATCGACCGCATCC
GGGGCGTTCACCTCCTGTGCATCAGGTCGAAGACCAAAGTGACTAGATCA
GTGTTAGAAGCGGCGGACAAGCTGCTCGCAATCGGATGTTTTTGTATTGG
AACTGATCAGGTTGACCTTGTCGCTGCCGAGGAGCACGGTGTTCCTGTAT
TTAATGCTCCGTTCTCGAACACTAGGTCCGTTGCCGAGCTTGTAATCGGT
GAGATCATAGCTCTTTCTCGAAACTTGTCCGACAAGTCGCGCGATGCCCA
TCAGGGTATCTGGAGCAAGAGCGCTAAGGGTTGTTCTGAAGTTCGAGGCA
AAGTACTCGGTATTATTGGATACGGACATATAGGGTCGCAGTTGTCTGTT
CTGGCAGAAGGATTGGGTATGCAAGTAATTTACTACGACGTTGTTTCCGT
GCTGCCTATCGGTAATGGTAGAGCAGTGGGCTCGATGGATGAACTTCTCG
AAAACGCTGATTTCGTATCACTGCATGTGCCAAAGGCCCCTTCGACAAAC
AATTTGATTACTGCGACTGAAATAGCGAAGATGAAGAAAGGCTCATACCT
AATCAATGCCTCTCGAGGGACAGTAGTGGACATTGAGGCGCTGGCCTGTG
CTTTGAAAGAAGAGCACTTGAGCGGCGCGGCCATTGATGTATTCCCCTCC
GAACCGGCGAAGAACGGACCCGGCTTCAAGTCGCCGCTGTGTGGTCTGGA
GAATGTGATCCTCACTCCTCACATTGGTGGATCAACTGGTGAAGCGCAAC
GAAATATTGGTGTTGAAGTGTCCACGGCTTTAATCAAATATGTGAATCTT
GGAACTACGATTGGGGCTGTGAACTTCCCGAACCTGGACATGCCAATTGG
CACCGACTGTCATAGGATTCTCAACGTGCATAGGATTCTGAACGTGCACC
AAAACGTGCCTGGTGTTCTGACGGCGATAAACTCCATTTTGTCCGACACG
AAGAGCAACGTTGCTTCCCAAATGTTGGGCACTTCCGCCAAGATTGGCTA
TATAATCATTGACCTCAACAAGGAAACCAGTGGGGAGACCAAAGCGGCTA
TCTCTGATCTGGAAACTTCAATATCTACGCGAATTCTGTTTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1511165..1512508+

>Gvermi12784.t1 ID=Gvermi12784.t1|Name=Gvermi12784.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1344bp|location=Sequence derived from alignment at ScGOVlb_425:1511165..1512508+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACAGGTATTCTCCTGAAGCAATATCACGTCTCAGAACATCCGCACC
GCGCGCACCTATTTTGGCTGCTTCTCCAGTTGAATCCTTCATGGTTGCCG
TACCGCAGTTATCGTTCCGTAAGTCCAAGGTCAGAGTGCTTGTCTTGGAG
AACATTCATAAATCAGCCGTTGATGGTTTTAAGTCAGAAACGTTTGATGT
GGACACAGTACCGAAAGCGTTGCTGGAGCATGAGCTAATCGACCGCATCC
GGGGCGTTCACCTCCTGTGCATCAGGTCGAAGACCAAAGTGACTAGATCA
GTGTTAGAAGCGGCGGACAAGCTGCTCGCAATCGGATGTTTTTGTATTGG
AACTGATCAGGTTGACCTTGTCGCTGCCGAGGAGCACGGTGTTCCTGTAT
TTAATGCTCCGTTCTCGAACACTAGGTCCGTTGCCGAGCTTGTAATCGGT
GAGATCATAGCTCTTTCTCGAAACTTGTCCGACAAGTCGCGCGATGCCCA
TCAGGGTATCTGGAGCAAGAGCGCTAAGGGTTGTTCTGAAGTTCGAGGCA
AAGTACTCGGTATTATTGGATACGGACATATAGGGTCGCAGTTGTCTGTT
CTGGCAGAAGGATTGGGTATGCAAGTAATTTACTACGACGTTGTTTCCGT
GCTGCCTATCGGTAATGGTAGAGCAGTGGGCTCGATGGATGAACTTCTCG
AAAACGCTGATTTCGTATCACTGCATGTGCCAAAGGCCCCTTCGACAAAC
AATTTGATTACTGCGACTGAAATAGCGAAGATGAAGAAAGGCTCATACCT
AATCAATGCCTCTCGAGGGACAGTAGTGGACATTGAGGCGCTGGCCTGTG
CTTTGAAAGAAGAGCACTTGAGCGGCGCGGCCATTGATGTATTCCCCTCC
GAACCGGCGAAGAACGGACCCGGCTTCAAGTCGCCGCTGTGTGGTCTGGA
GAATGTGATCCTCACTCCTCACATTGGTGGATCAACTGGTGAAGCGCAAC
GAAATATTGGTGTTGAAGTGTCCACGGCTTTAATCAAATATGTGAATCTT
GGAACTACGATTGGGGCTGTGAACTTCCCGAACCTGGACATGCCAATTGG
CACCGACTGTCATAGGATTCTCAACGTGCATAGGATTCTGAACGTGCACC
AAAACGTGCCTGGTGTTCTGACGGCGATAAACTCCATTTTGTCCGACACG
AAGAGCAACGTTGCTTCCCAAATGTTGGGCACTTCCGCCAAGATTGGCTA
TATAATCATTGACCTCAACAAGGAAACCAGTGGGGAGACCAAAGCGGCTA
TCTCTGATCTGGAAACTTCAATATCTACGCGAATTCTGTTTTAA
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