Gvermi12843.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12843.t1
Unique Name	Gvermi12843.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	529

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1775413..1776999 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1108849.XP_002565545.1
Preferred name	lub1
PFAMs	PFU,PUL,WD40
Max annot lvl	4751\|Fungi
KEGG ko	ko:K14018
KEGG Pathway	ko04141,map04141
GOs	GO:0000726,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006303,GO:0006325,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006914,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0010992,GO:0016043,GO:0016236,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0019538,GO:0019725,GO:0019941,GO:0030163,GO:0032182,GO:0032446,GO:0033554,GO:0034517,GO:0034641,GO:0035973,GO:0036211,GO:0042592,GO:0043130,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051603,GO:0051716,GO:0061912,GO:0061919,GO:0065007,GO:0065008,GO:0070647,GO:0071704,GO:0071840,GO:0072671,GO:0090304,GO:1901360,GO:1901564,GO:1901565,GO:1901575
Evalue	1.65e-08
EggNOG OGs	KOG0301@1\|root,KOG0301@2759\|Eukaryota,38BSR@33154\|Opisthokonta,3NUQN@4751\|Fungi,3QJG5@4890\|Ascomycota,20BU8@147545\|Eurotiomycetes,3S7HT@5042\|Eurotiales
Description	Polyubiquitin binding protein (Doa1 Ufd3)
COG category	I
BRITE	ko00000,ko00001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12843	Gvermi12843	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 1775413..1776999 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12843.t1.start1	Gvermi12843.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 1775413..1775415 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12843.t1.CDS1	Gvermi12843.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 1775413..1776999 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12843.t1.exon1	Gvermi12843.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 1775413..1776999 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12843.t1.stop1	Gvermi12843.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 1776997..1776999 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12843.t1	Gvermi12843.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 1775413..1776999 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:1775413..1776999+
coding sequence from alignment at ScGOVlb_425:1775413..1776999+

mRNA sequence

>Gvermi12843.t1 ID=Gvermi12843.t1|Name=Gvermi12843.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=529bp
MPEFARSPVQTLSLAPRSNLLAAQTSSNSFAIAQIAAPTASPHAFQPADD
CPAPSLTSLCLASADVLYHADARGAFHRHAVTDAPSLQYSVDAAHTGHEL
TSITALSPDTVVVTAGKDGAVRCWDPETRQCTAKLAGHKYEVRSVAASAS
SDVDGSPVTIIASGGRDKTIRLWDVRAHSSTQLHTFEGHTSWVHSVALTA
NPTPLLISCAGDKTVRVWDLVAMKERSVFTGHEYRVWSVAVSPDGRFAVS
GSTDATVRLWKLGEDEGKCHVLEGHRDSVLSVAALTPACIISGCEDGTLF
SWDCRGLLSVPSDANLLYNESDSLNDTASTVVDEKPGVSDKNVAELVVDE
KKSLIDTEPDAPPSALSTPKHFETEVLDSGNPPEASRSTPATRKSEETDA
LKMVVSTPPEKDPRFDKSAAELVFALKRIQALEKSLQQAEQALGVKETQV
AQLNKSIAEKDLLISRLQGELSSSKRLLHAANVRNLLEQNTRKADVALDY
QEPVNRIGAVTDQLTALKARLDAMIATN*

spliced messenger RNA

>Gvermi12843.t1 ID=Gvermi12843.t1|Name=Gvermi12843.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1587bp|location=Sequence derived from alignment at ScGOVlb_425:1775413..1776999+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGAATTTGCCCGGAGCCCTGTCCAGACGCTCTCCCTGGCGCCGAG
AAGCAACCTGCTTGCCGCTCAGACCTCGTCAAACTCCTTTGCTATCGCTC
AAATTGCCGCACCCACCGCCAGCCCCCACGCGTTCCAGCCCGCCGATGAC
TGCCCAGCACCTTCGCTCACTTCGCTCTGTCTGGCCTCTGCGGACGTTCT
TTACCACGCAGACGCCAGAGGCGCCTTCCACCGACATGCCGTAACCGATG
CGCCTTCTCTTCAATACAGCGTTGACGCAGCGCACACTGGCCACGAGCTC
ACTTCCATCACAGCTCTATCTCCTGATACCGTGGTTGTTACCGCCGGAAA
GGATGGCGCCGTACGCTGCTGGGACCCGGAAACACGCCAATGCACGGCAA
AGTTGGCGGGCCATAAATACGAAGTGCGCTCGGTTGCAGCATCAGCTTCC
TCAGATGTGGACGGTAGTCCAGTCACTATAATTGCATCAGGAGGTCGCGA
CAAAACAATAAGGTTGTGGGATGTTCGCGCTCATTCTTCAACTCAGCTTC
ACACTTTTGAAGGGCATACGAGCTGGGTCCACAGTGTTGCTCTTACCGCC
AACCCTACTCCGTTGCTGATTTCATGTGCAGGTGATAAAACAGTCCGCGT
GTGGGATCTCGTGGCGATGAAAGAGCGTTCGGTGTTCACGGGGCACGAGT
ACCGTGTTTGGAGCGTTGCCGTATCTCCAGACGGTCGTTTTGCCGTCAGT
GGAAGCACAGACGCAACTGTTAGATTGTGGAAGCTCGGCGAAGATGAAGG
AAAGTGCCATGTGCTCGAGGGACATAGGGATAGCGTTTTGTCTGTAGCGG
CATTGACACCAGCTTGCATAATTTCTGGGTGTGAAGATGGAACGCTCTTC
AGCTGGGATTGTCGCGGGCTGCTAAGCGTCCCTTCGGACGCCAATCTGTT
GTACAACGAGAGCGATTCTTTGAATGACACAGCGTCAACAGTTGTCGATG
AGAAACCTGGCGTCTCAGACAAGAATGTTGCAGAACTCGTCGTCGACGAA
AAAAAATCATTGATTGATACCGAACCTGATGCGCCACCTTCGGCTCTAAG
CACACCAAAACACTTTGAGACCGAGGTTCTAGACTCTGGAAACCCTCCAG
AGGCTTCACGCTCAACTCCAGCAACTCGCAAAAGTGAAGAGACAGACGCC
TTAAAGATGGTTGTCTCTACACCACCGGAGAAGGATCCTCGTTTCGACAA
GTCCGCTGCTGAACTAGTTTTTGCTCTGAAGCGGATACAGGCCTTGGAGA
AATCCTTGCAGCAGGCGGAACAGGCATTGGGAGTGAAAGAAACTCAGGTC
GCACAGTTAAACAAGTCTATCGCAGAGAAAGATCTACTCATTTCGCGCCT
TCAAGGAGAACTGAGTTCCTCAAAGAGATTACTACACGCTGCAAACGTGC
GAAATCTCCTTGAACAGAACACTAGAAAAGCAGATGTTGCGCTCGACTAT
CAGGAGCCCGTTAATCGGATCGGGGCTGTGACGGATCAGCTTACTGCTTT
GAAAGCAAGACTTGATGCCATGATTGCTACTAACTGA

protein sequence of Gvermi12843.t1

>Gvermi12843.t1 ID=Gvermi12843.t1|Name=Gvermi12843.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=529bp
MPEFARSPVQTLSLAPRSNLLAAQTSSNSFAIAQIAAPTASPHAFQPADD
CPAPSLTSLCLASADVLYHADARGAFHRHAVTDAPSLQYSVDAAHTGHEL
TSITALSPDTVVVTAGKDGAVRCWDPETRQCTAKLAGHKYEVRSVAASAS
SDVDGSPVTIIASGGRDKTIRLWDVRAHSSTQLHTFEGHTSWVHSVALTA
NPTPLLISCAGDKTVRVWDLVAMKERSVFTGHEYRVWSVAVSPDGRFAVS
GSTDATVRLWKLGEDEGKCHVLEGHRDSVLSVAALTPACIISGCEDGTLF
SWDCRGLLSVPSDANLLYNESDSLNDTASTVVDEKPGVSDKNVAELVVDE
KKSLIDTEPDAPPSALSTPKHFETEVLDSGNPPEASRSTPATRKSEETDA
LKMVVSTPPEKDPRFDKSAAELVFALKRIQALEKSLQQAEQALGVKETQV
AQLNKSIAEKDLLISRLQGELSSSKRLLHAANVRNLLEQNTRKADVALDY
QEPVNRIGAVTDQLTALKARLDAMIATN*

mRNA from alignment at ScGOVlb_425:1775413..1776999+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12843.t1 ID=Gvermi12843.t1|Name=Gvermi12843.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1587bp|location=Sequence derived from alignment at ScGOVlb_425:1775413..1776999+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCGAATTTGCCCGGAGCCCTGTCCAGACGCTCTCCCTGGCGCCGAG
AAGCAACCTGCTTGCCGCTCAGACCTCGTCAAACTCCTTTGCTATCGCTC
AAATTGCCGCACCCACCGCCAGCCCCCACGCGTTCCAGCCCGCCGATGAC
TGCCCAGCACCTTCGCTCACTTCGCTCTGTCTGGCCTCTGCGGACGTTCT
TTACCACGCAGACGCCAGAGGCGCCTTCCACCGACATGCCGTAACCGATG
CGCCTTCTCTTCAATACAGCGTTGACGCAGCGCACACTGGCCACGAGCTC
ACTTCCATCACAGCTCTATCTCCTGATACCGTGGTTGTTACCGCCGGAAA
GGATGGCGCCGTACGCTGCTGGGACCCGGAAACACGCCAATGCACGGCAA
AGTTGGCGGGCCATAAATACGAAGTGCGCTCGGTTGCAGCATCAGCTTCC
TCAGATGTGGACGGTAGTCCAGTCACTATAATTGCATCAGGAGGTCGCGA
CAAAACAATAAGGTTGTGGGATGTTCGCGCTCATTCTTCAACTCAGCTTC
ACACTTTTGAAGGGCATACGAGCTGGGTCCACAGTGTTGCTCTTACCGCC
AACCCTACTCCGTTGCTGATTTCATGTGCAGGTGATAAAACAGTCCGCGT
GTGGGATCTCGTGGCGATGAAAGAGCGTTCGGTGTTCACGGGGCACGAGT
ACCGTGTTTGGAGCGTTGCCGTATCTCCAGACGGTCGTTTTGCCGTCAGT
GGAAGCACAGACGCAACTGTTAGATTGTGGAAGCTCGGCGAAGATGAAGG
AAAGTGCCATGTGCTCGAGGGACATAGGGATAGCGTTTTGTCTGTAGCGG
CATTGACACCAGCTTGCATAATTTCTGGGTGTGAAGATGGAACGCTCTTC
AGCTGGGATTGTCGCGGGCTGCTAAGCGTCCCTTCGGACGCCAATCTGTT
GTACAACGAGAGCGATTCTTTGAATGACACAGCGTCAACAGTTGTCGATG
AGAAACCTGGCGTCTCAGACAAGAATGTTGCAGAACTCGTCGTCGACGAA
AAAAAATCATTGATTGATACCGAACCTGATGCGCCACCTTCGGCTCTAAG
CACACCAAAACACTTTGAGACCGAGGTTCTAGACTCTGGAAACCCTCCAG
AGGCTTCACGCTCAACTCCAGCAACTCGCAAAAGTGAAGAGACAGACGCC
TTAAAGATGGTTGTCTCTACACCACCGGAGAAGGATCCTCGTTTCGACAA
GTCCGCTGCTGAACTAGTTTTTGCTCTGAAGCGGATACAGGCCTTGGAGA
AATCCTTGCAGCAGGCGGAACAGGCATTGGGAGTGAAAGAAACTCAGGTC
GCACAGTTAAACAAGTCTATCGCAGAGAAAGATCTACTCATTTCGCGCCT
TCAAGGAGAACTGAGTTCCTCAAAGAGATTACTACACGCTGCAAACGTGC
GAAATCTCCTTGAACAGAACACTAGAAAAGCAGATGTTGCGCTCGACTAT
CAGGAGCCCGTTAATCGGATCGGGGCTGTGACGGATCAGCTTACTGCTTT
GAAAGCAAGACTTGATGCCATGATTGCTACTAACTGA

Coding sequence (CDS) from alignment at ScGOVlb_425:1775413..1776999+

>Gvermi12843.t1 ID=Gvermi12843.t1|Name=Gvermi12843.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1587bp|location=Sequence derived from alignment at ScGOVlb_425:1775413..1776999+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCGAATTTGCCCGGAGCCCTGTCCAGACGCTCTCCCTGGCGCCGAG
AAGCAACCTGCTTGCCGCTCAGACCTCGTCAAACTCCTTTGCTATCGCTC
AAATTGCCGCACCCACCGCCAGCCCCCACGCGTTCCAGCCCGCCGATGAC
TGCCCAGCACCTTCGCTCACTTCGCTCTGTCTGGCCTCTGCGGACGTTCT
TTACCACGCAGACGCCAGAGGCGCCTTCCACCGACATGCCGTAACCGATG
CGCCTTCTCTTCAATACAGCGTTGACGCAGCGCACACTGGCCACGAGCTC
ACTTCCATCACAGCTCTATCTCCTGATACCGTGGTTGTTACCGCCGGAAA
GGATGGCGCCGTACGCTGCTGGGACCCGGAAACACGCCAATGCACGGCAA
AGTTGGCGGGCCATAAATACGAAGTGCGCTCGGTTGCAGCATCAGCTTCC
TCAGATGTGGACGGTAGTCCAGTCACTATAATTGCATCAGGAGGTCGCGA
CAAAACAATAAGGTTGTGGGATGTTCGCGCTCATTCTTCAACTCAGCTTC
ACACTTTTGAAGGGCATACGAGCTGGGTCCACAGTGTTGCTCTTACCGCC
AACCCTACTCCGTTGCTGATTTCATGTGCAGGTGATAAAACAGTCCGCGT
GTGGGATCTCGTGGCGATGAAAGAGCGTTCGGTGTTCACGGGGCACGAGT
ACCGTGTTTGGAGCGTTGCCGTATCTCCAGACGGTCGTTTTGCCGTCAGT
GGAAGCACAGACGCAACTGTTAGATTGTGGAAGCTCGGCGAAGATGAAGG
AAAGTGCCATGTGCTCGAGGGACATAGGGATAGCGTTTTGTCTGTAGCGG
CATTGACACCAGCTTGCATAATTTCTGGGTGTGAAGATGGAACGCTCTTC
AGCTGGGATTGTCGCGGGCTGCTAAGCGTCCCTTCGGACGCCAATCTGTT
GTACAACGAGAGCGATTCTTTGAATGACACAGCGTCAACAGTTGTCGATG
AGAAACCTGGCGTCTCAGACAAGAATGTTGCAGAACTCGTCGTCGACGAA
AAAAAATCATTGATTGATACCGAACCTGATGCGCCACCTTCGGCTCTAAG
CACACCAAAACACTTTGAGACCGAGGTTCTAGACTCTGGAAACCCTCCAG
AGGCTTCACGCTCAACTCCAGCAACTCGCAAAAGTGAAGAGACAGACGCC
TTAAAGATGGTTGTCTCTACACCACCGGAGAAGGATCCTCGTTTCGACAA
GTCCGCTGCTGAACTAGTTTTTGCTCTGAAGCGGATACAGGCCTTGGAGA
AATCCTTGCAGCAGGCGGAACAGGCATTGGGAGTGAAAGAAACTCAGGTC
GCACAGTTAAACAAGTCTATCGCAGAGAAAGATCTACTCATTTCGCGCCT
TCAAGGAGAACTGAGTTCCTCAAAGAGATTACTACACGCTGCAAACGTGC
GAAATCTCCTTGAACAGAACACTAGAAAAGCAGATGTTGCGCTCGACTAT
CAGGAGCCCGTTAATCGGATCGGGGCTGTGACGGATCAGCTTACTGCTTT
GAAAGCAAGACTTGATGCCATGATTGCTACTAACTGA