Gvermi12664.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12664.t1
Unique NameGvermi12664.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length489
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:213903..215369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12664Gvermi12664Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 213903..215369 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12664.t1.start1Gvermi12664.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 213903..213905 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12664.t1.CDS1Gvermi12664.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 213903..215369 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12664.t1.exon1Gvermi12664.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 213903..215369 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12664.t1.stop1Gvermi12664.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 215367..215369 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12664.t1Gvermi12664.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 213903..215369 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12664.t1 ID=Gvermi12664.t1|Name=Gvermi12664.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=489bp
MDASNAKTTTLLLDGLDFTPGFTLSTIQFGNEALNTITTSLLTALIIANL
LSIINRLILLTRPDVFSYSSFARSHVFQNSDDPLRIWSWMRGWYDFRAHG
PRATSPMHYRISKRLLLVPLCARIAVLVVTIGSIALALPYEKRLDACSRG
DYALTQEDVVARPIVRAQGLLRVCYPIPVKSKLGTVRSTASYCSFSVSPG
DVNQMANLVKTLENTSMDGLVAAGYFPNTGVMLSIIASGQLFQVSASFIE
WRTENGDFYHSLLSSWDGQRFIEAITVGLSFALNETCKSVGITEQKDSDF
EFSAGFVNCSFNANLALRYVTASVRESMRFRKQKQTALRVLDKGDEMSEA
RQTCPVDVTVQRPMINIVPLLVGLTLAFCLNVTVGVTVSHRGNAMDAAFH
LVREVLGHDTGANPLQVSARGDDIENVALRNRVCADGISGHKGFMHGQGD
TVVEEFDSRQTVGRCMQVACRGLRNMNEIVSEKGGNAV*
back to top

spliced messenger RNA

>Gvermi12664.t1 ID=Gvermi12664.t1|Name=Gvermi12664.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1467bp|location=Sequence derived from alignment at ScGOVlb_425:213903..215369+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGCGTCGAACGCCAAAACGACAACACTTTTGTTAGATGGTCTTGA
CTTCACTCCAGGATTCACGCTATCTACAATTCAATTCGGCAATGAGGCAC
TTAATACTATCACCACGTCTCTGCTCACCGCGTTGATAATTGCCAATCTC
TTGAGCATCATCAATCGATTGATACTGTTGACTCGCCCCGACGTCTTCAG
CTACAGCTCGTTTGCGCGATCACACGTTTTCCAAAATTCAGATGACCCGT
TGCGAATCTGGTCCTGGATGCGTGGATGGTACGACTTTCGAGCCCACGGC
CCCCGTGCTACGAGTCCTATGCATTACCGAATTTCTAAACGCCTTCTTCT
CGTGCCGCTTTGTGCTCGGATTGCTGTACTTGTCGTGACCATTGGGTCTA
TTGCGTTGGCATTGCCGTATGAAAAGCGTCTTGATGCTTGCAGTCGTGGG
GATTACGCGTTAACTCAGGAAGACGTTGTTGCACGCCCTATTGTAAGGGC
ACAGGGCTTACTGCGAGTATGTTATCCTATACCTGTCAAATCGAAGCTCG
GTACGGTAAGATCGACAGCCTCTTATTGTTCGTTCAGTGTGTCCCCTGGT
GATGTGAATCAAATGGCTAACCTCGTGAAAACTCTTGAAAACACCTCGAT
GGACGGATTAGTAGCTGCGGGTTATTTTCCAAATACTGGGGTGATGTTGT
CGATTATTGCCTCGGGTCAATTGTTTCAGGTTTCTGCTTCATTTATAGAA
TGGAGAACTGAAAACGGCGATTTCTACCACTCTTTGCTTTCAAGCTGGGA
CGGTCAACGATTCATCGAAGCAATTACCGTTGGGTTGAGCTTTGCGTTGA
ATGAGACATGCAAGAGTGTAGGAATCACAGAACAGAAAGATTCCGATTTT
GAATTCAGTGCTGGGTTTGTTAATTGCTCTTTTAACGCCAACTTGGCATT
AAGGTATGTCACTGCATCAGTGAGAGAGAGTATGCGATTTCGAAAACAGA
AACAGACTGCTCTTCGTGTCCTCGACAAGGGTGATGAGATGTCCGAAGCA
AGGCAGACTTGCCCAGTCGATGTCACCGTCCAACGGCCGATGATCAACAT
CGTACCGCTGCTCGTCGGCCTCACTCTGGCGTTTTGCCTGAACGTGACTG
TGGGAGTGACCGTTTCACATCGCGGAAATGCGATGGACGCGGCCTTCCAC
CTTGTGCGGGAAGTGTTGGGACACGACACAGGCGCCAATCCGCTGCAGGT
GTCCGCGAGAGGAGACGACATCGAAAACGTTGCGCTGCGCAATCGTGTGT
GCGCTGATGGGATTTCTGGGCACAAGGGATTCATGCATGGGCAAGGCGAT
ACCGTCGTGGAGGAGTTTGACAGTAGACAGACGGTGGGGCGGTGCATGCA
AGTGGCTTGCCGTGGCCTGCGCAATATGAACGAGATAGTGTCGGAAAAAG
GAGGGAATGCGGTATGA
back to top

protein sequence of Gvermi12664.t1

>Gvermi12664.t1 ID=Gvermi12664.t1|Name=Gvermi12664.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=489bp
MDASNAKTTTLLLDGLDFTPGFTLSTIQFGNEALNTITTSLLTALIIANL
LSIINRLILLTRPDVFSYSSFARSHVFQNSDDPLRIWSWMRGWYDFRAHG
PRATSPMHYRISKRLLLVPLCARIAVLVVTIGSIALALPYEKRLDACSRG
DYALTQEDVVARPIVRAQGLLRVCYPIPVKSKLGTVRSTASYCSFSVSPG
DVNQMANLVKTLENTSMDGLVAAGYFPNTGVMLSIIASGQLFQVSASFIE
WRTENGDFYHSLLSSWDGQRFIEAITVGLSFALNETCKSVGITEQKDSDF
EFSAGFVNCSFNANLALRYVTASVRESMRFRKQKQTALRVLDKGDEMSEA
RQTCPVDVTVQRPMINIVPLLVGLTLAFCLNVTVGVTVSHRGNAMDAAFH
LVREVLGHDTGANPLQVSARGDDIENVALRNRVCADGISGHKGFMHGQGD
TVVEEFDSRQTVGRCMQVACRGLRNMNEIVSEKGGNAV*
back to top

mRNA from alignment at ScGOVlb_425:213903..215369+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12664.t1 ID=Gvermi12664.t1|Name=Gvermi12664.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1467bp|location=Sequence derived from alignment at ScGOVlb_425:213903..215369+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATGCGTCGAACGCCAAAACGACAACACTTTTGTTAGATGGTCTTGA
CTTCACTCCAGGATTCACGCTATCTACAATTCAATTCGGCAATGAGGCAC
TTAATACTATCACCACGTCTCTGCTCACCGCGTTGATAATTGCCAATCTC
TTGAGCATCATCAATCGATTGATACTGTTGACTCGCCCCGACGTCTTCAG
CTACAGCTCGTTTGCGCGATCACACGTTTTCCAAAATTCAGATGACCCGT
TGCGAATCTGGTCCTGGATGCGTGGATGGTACGACTTTCGAGCCCACGGC
CCCCGTGCTACGAGTCCTATGCATTACCGAATTTCTAAACGCCTTCTTCT
CGTGCCGCTTTGTGCTCGGATTGCTGTACTTGTCGTGACCATTGGGTCTA
TTGCGTTGGCATTGCCGTATGAAAAGCGTCTTGATGCTTGCAGTCGTGGG
GATTACGCGTTAACTCAGGAAGACGTTGTTGCACGCCCTATTGTAAGGGC
ACAGGGCTTACTGCGAGTATGTTATCCTATACCTGTCAAATCGAAGCTCG
GTACGGTAAGATCGACAGCCTCTTATTGTTCGTTCAGTGTGTCCCCTGGT
GATGTGAATCAAATGGCTAACCTCGTGAAAACTCTTGAAAACACCTCGAT
GGACGGATTAGTAGCTGCGGGTTATTTTCCAAATACTGGGGTGATGTTGT
CGATTATTGCCTCGGGTCAATTGTTTCAGGTTTCTGCTTCATTTATAGAA
TGGAGAACTGAAAACGGCGATTTCTACCACTCTTTGCTTTCAAGCTGGGA
CGGTCAACGATTCATCGAAGCAATTACCGTTGGGTTGAGCTTTGCGTTGA
ATGAGACATGCAAGAGTGTAGGAATCACAGAACAGAAAGATTCCGATTTT
GAATTCAGTGCTGGGTTTGTTAATTGCTCTTTTAACGCCAACTTGGCATT
AAGGTATGTCACTGCATCAGTGAGAGAGAGTATGCGATTTCGAAAACAGA
AACAGACTGCTCTTCGTGTCCTCGACAAGGGTGATGAGATGTCCGAAGCA
AGGCAGACTTGCCCAGTCGATGTCACCGTCCAACGGCCGATGATCAACAT
CGTACCGCTGCTCGTCGGCCTCACTCTGGCGTTTTGCCTGAACGTGACTG
TGGGAGTGACCGTTTCACATCGCGGAAATGCGATGGACGCGGCCTTCCAC
CTTGTGCGGGAAGTGTTGGGACACGACACAGGCGCCAATCCGCTGCAGGT
GTCCGCGAGAGGAGACGACATCGAAAACGTTGCGCTGCGCAATCGTGTGT
GCGCTGATGGGATTTCTGGGCACAAGGGATTCATGCATGGGCAAGGCGAT
ACCGTCGTGGAGGAGTTTGACAGTAGACAGACGGTGGGGCGGTGCATGCA
AGTGGCTTGCCGTGGCCTGCGCAATATGAACGAGATAGTGTCGGAAAAAG
GAGGGAATGCGGTATGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_425:213903..215369+

>Gvermi12664.t1 ID=Gvermi12664.t1|Name=Gvermi12664.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1467bp|location=Sequence derived from alignment at ScGOVlb_425:213903..215369+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATGCGTCGAACGCCAAAACGACAACACTTTTGTTAGATGGTCTTGA
CTTCACTCCAGGATTCACGCTATCTACAATTCAATTCGGCAATGAGGCAC
TTAATACTATCACCACGTCTCTGCTCACCGCGTTGATAATTGCCAATCTC
TTGAGCATCATCAATCGATTGATACTGTTGACTCGCCCCGACGTCTTCAG
CTACAGCTCGTTTGCGCGATCACACGTTTTCCAAAATTCAGATGACCCGT
TGCGAATCTGGTCCTGGATGCGTGGATGGTACGACTTTCGAGCCCACGGC
CCCCGTGCTACGAGTCCTATGCATTACCGAATTTCTAAACGCCTTCTTCT
CGTGCCGCTTTGTGCTCGGATTGCTGTACTTGTCGTGACCATTGGGTCTA
TTGCGTTGGCATTGCCGTATGAAAAGCGTCTTGATGCTTGCAGTCGTGGG
GATTACGCGTTAACTCAGGAAGACGTTGTTGCACGCCCTATTGTAAGGGC
ACAGGGCTTACTGCGAGTATGTTATCCTATACCTGTCAAATCGAAGCTCG
GTACGGTAAGATCGACAGCCTCTTATTGTTCGTTCAGTGTGTCCCCTGGT
GATGTGAATCAAATGGCTAACCTCGTGAAAACTCTTGAAAACACCTCGAT
GGACGGATTAGTAGCTGCGGGTTATTTTCCAAATACTGGGGTGATGTTGT
CGATTATTGCCTCGGGTCAATTGTTTCAGGTTTCTGCTTCATTTATAGAA
TGGAGAACTGAAAACGGCGATTTCTACCACTCTTTGCTTTCAAGCTGGGA
CGGTCAACGATTCATCGAAGCAATTACCGTTGGGTTGAGCTTTGCGTTGA
ATGAGACATGCAAGAGTGTAGGAATCACAGAACAGAAAGATTCCGATTTT
GAATTCAGTGCTGGGTTTGTTAATTGCTCTTTTAACGCCAACTTGGCATT
AAGGTATGTCACTGCATCAGTGAGAGAGAGTATGCGATTTCGAAAACAGA
AACAGACTGCTCTTCGTGTCCTCGACAAGGGTGATGAGATGTCCGAAGCA
AGGCAGACTTGCCCAGTCGATGTCACCGTCCAACGGCCGATGATCAACAT
CGTACCGCTGCTCGTCGGCCTCACTCTGGCGTTTTGCCTGAACGTGACTG
TGGGAGTGACCGTTTCACATCGCGGAAATGCGATGGACGCGGCCTTCCAC
CTTGTGCGGGAAGTGTTGGGACACGACACAGGCGCCAATCCGCTGCAGGT
GTCCGCGAGAGGAGACGACATCGAAAACGTTGCGCTGCGCAATCGTGTGT
GCGCTGATGGGATTTCTGGGCACAAGGGATTCATGCATGGGCAAGGCGAT
ACCGTCGTGGAGGAGTTTGACAGTAGACAGACGGTGGGGCGGTGCATGCA
AGTGGCTTGCCGTGGCCTGCGCAATATGAACGAGATAGTGTCGGAAAAAG
GAGGGAATGCGGTATGA
back to top