Gvermi12735.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12735.t1
Unique NameGvermi12735.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length494
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1279661..1281142 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6211.A0A068YJK7
Preferred nameVAPA
PFAMsMotile_Sperm
Max annot lvl33208|Metazoa
KEGG koko:K06096,ko:K10707
KEGG TC9.B.17.1.1
KEGG Pathwayko04979,map04979
GOsGO:0000226,GO:0000323,GO:0001505,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005764,GO:0005765,GO:0005766,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005794,GO:0005856,GO:0005886,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006665,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006836,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006900,GO:0006928,GO:0006950,GO:0006952,GO:0006955,GO:0006986,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007029,GO:0007154,GO:0007165,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007399,GO:0007528,GO:0008017,GO:0008021,GO:0008088,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008610,GO:0009058,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0010033,GO:0010256,GO:0010970,GO:0012505,GO:0012506,GO:0015630,GO:0015631,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016079,GO:0016082,GO:0016192,GO:0017156,GO:0019048,GO:0019054,GO:0019637,GO:0019725,GO:0019899,GO:0019904,GO:0021700,GO:0022008,GO:0022607,GO:0023052,GO:0023061,GO:0030003,GO:0030030,GO:0030133,GO:0030141,GO:0030148,GO:0030154,GO:0030182,GO:0030659,GO:0030667,GO:0030705,GO:0030968,GO:0031090,GO:0031122,GO:0031175,GO:0031410,GO:0031965,GO:0031967,GO:0031975,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032940,GO:0033036,GO:0033149,GO:0033365,GO:0033554,GO:0034613,GO:0034620,GO:0034622,GO:0034976,GO:0035577,GO:0035821,GO:0035966,GO:0035967,GO:0036230,GO:0040012,GO:0040013,GO:0040017,GO:0042119,GO:0042175,GO:0042221,GO:0042582,GO:0042592,GO:0042742,GO:0042802,GO:0042803,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043299,GO:0043312,GO:0043900,GO:0043901,GO:0043902,GO:0043903,GO:0043933,GO:0044003,GO:0044068,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044403,GO:0044419,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044456,GO:0044464,GO:0044788,GO:0044789,GO:0044790,GO:0044791,GO:0044793,GO:0044794,GO:0044827,GO:0044828,GO:0044829,GO:0044830,GO:0045055,GO:0045069,GO:0045070,GO:0045071,GO:0045202,GO:0045321,GO:0046467,GO:0046486,GO:0046488,GO:0046719,GO:0046725,GO:0046903,GO:0046907,GO:0046982,GO:0046983,GO:0048193,GO:0048194,GO:0048468,GO:0048487,GO:0048489,GO:0048518,GO:0048519,GO:0048524,GO:0048525,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050792,GO:0050794,GO:0050801,GO:0050808,GO:0050829,GO:0050896,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051701,GO:0051702,GO:0051704,GO:0051707,GO:0051716,GO:0051817,GO:0051851,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0060074,GO:0061024,GO:0061025,GO:0065003,GO:0065007,GO:0065008,GO:0070382,GO:0070727,GO:0070887,GO:0070972,GO:0071310,GO:0071704,GO:0071840,GO:0071944,GO:0072503,GO:0072507,GO:0072553,GO:0090114,GO:0097435,GO:0097458,GO:0097479,GO:0097480,GO:0097708,GO:0098542,GO:0098588,GO:0098771,GO:0098793,GO:0098805,GO:0098827,GO:0098852,GO:0098916,GO:0099003,GO:0099111,GO:0099172,GO:0099503,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0120036,GO:0140029,GO:1901564,GO:1901566,GO:1901576,GO:1902186,GO:1902187,GO:1902188,GO:1903900,GO:1903901,GO:1903902
Evalue1.27e-10
EggNOG OGsCOG5066@1|root,KOG0439@2759|Eukaryota,39W5E@33154|Opisthokonta,3BHVG@33208|Metazoa,3CZXH@33213|Bilateria
DescriptionFFAT motif binding
COG categoryU
BRITEko00000,ko00001,ko02000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12735Gvermi12735Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1279661..1281142 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12735.t1.stop1Gvermi12735.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1279661..1279663 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12735.t1.CDS1Gvermi12735.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1279661..1281142 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12735.t1.exon1Gvermi12735.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1279661..1281142 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12735.t1.start1Gvermi12735.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1281140..1281142 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12735.t1Gvermi12735.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1279661..1281142 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12735.t1 ID=Gvermi12735.t1|Name=Gvermi12735.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=494bp
MPTILSTPPPAVVPEPSTPPPLHTTNSIAIAQSHRDATENFFTCEPPRRF
IFRSQLDKASTETLKITNNSPETLLYKVKTNEHRTYAVKSGCGLIEPHTT
AEVQIIQRPLRTFPRAQDVARHRFLVVAAPISSTPNRSTANPNAAVDLWN
LVPSSAVRKRTMGVIVKQSAFYIPLDKLVTFKPTTLAFVPSTNPNGSCCS
HLDVTNISEYPIVFKMKTTNQMGYVVRPRVGIIDPKQSFRIELSSQPKSK
RMDINGEITANPIVPVSRPTSHDKFKLEVAAVHSENLLGNVTPQDLWPRV
SAGDISTVLFPVLRNADPRKLSPSELPDRAAHRLQDAFKKLNANGSAGKL
QLSSSFMDTLEDVLFWTPKILRLRAENDAEQQPSILHLSNISERTLLYRI
ITKNKGLYEIYPEKDIIAAYDSLNVNVSVQNLKFSSNKWEALSDDASIEV
AIIDLKPEENLNKDDNDLDDMWAAIPQKDVLKIKFDVQIRNVI*
back to top

spliced messenger RNA

>Gvermi12735.t1 ID=Gvermi12735.t1|Name=Gvermi12735.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1482bp|location=Sequence derived from alignment at ScGOVlb_425:1279661..1281142- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCACCATTCTCAGCACCCCGCCGCCGGCTGTCGTCCCGGAGCCCAG
CACGCCCCCGCCGCTCCACACCACCAACTCCATTGCCATAGCCCAGTCAC
ACCGCGACGCCACGGAGAACTTCTTTACCTGCGAGCCGCCACGTCGCTTC
ATCTTCCGCTCCCAGCTAGACAAAGCGTCCACTGAGACGCTGAAGATTAC
AAACAACTCCCCTGAGACTCTGTTGTACAAGGTGAAGACCAACGAGCATC
GCACGTATGCCGTCAAGTCTGGCTGCGGTCTCATTGAGCCGCACACTACC
GCTGAGGTTCAGATTATCCAGCGTCCTCTTCGAACGTTTCCTCGGGCCCA
GGATGTGGCTCGCCACCGCTTCCTGGTCGTTGCCGCCCCCATCAGTTCCA
CCCCGAATCGCTCCACTGCCAACCCGAACGCCGCAGTCGACCTCTGGAAC
CTCGTGCCGAGCTCGGCCGTCCGCAAGCGTACCATGGGTGTCATAGTCAA
GCAGAGCGCGTTTTACATCCCGCTGGACAAGCTTGTCACCTTTAAGCCAA
CCACACTTGCGTTTGTGCCCTCCACAAACCCGAATGGTTCATGCTGTTCA
CATTTGGACGTGACGAACATTTCAGAGTATCCGATCGTTTTCAAGATGAA
GACTACCAATCAGATGGGCTACGTCGTCCGCCCTCGTGTCGGAATCATTG
ACCCTAAGCAGAGTTTCCGAATTGAGCTTTCGTCCCAGCCCAAGTCTAAG
CGAATGGACATTAATGGAGAGATTACCGCCAACCCTATTGTGCCCGTCAG
CAGGCCCACTTCCCATGACAAGTTCAAACTCGAGGTAGCTGCCGTCCACT
CCGAGAACCTTCTTGGAAATGTCACGCCGCAAGATCTGTGGCCCAGAGTT
TCGGCCGGCGACATAAGCACCGTGCTCTTCCCCGTGTTGCGAAATGCAGA
TCCTCGCAAGCTCAGCCCCTCCGAACTGCCGGACCGTGCCGCCCATCGGT
TGCAGGACGCTTTTAAGAAACTGAACGCGAACGGCAGCGCTGGGAAGTTA
CAACTGTCGAGCTCGTTCATGGATACTTTGGAAGATGTTCTGTTCTGGAC
GCCCAAGATTTTGCGTCTCCGGGCTGAAAATGATGCCGAGCAACAGCCGT
CAATTCTGCACCTCAGCAATATTTCCGAGAGAACTTTATTGTATCGGATC
ATCACCAAAAACAAGGGTCTTTACGAGATATACCCAGAGAAGGATATTAT
TGCGGCGTATGATTCGCTGAATGTGAATGTGAGTGTGCAGAATCTGAAGT
TCTCGTCCAACAAATGGGAGGCGTTGTCGGATGATGCTTCTATCGAGGTT
GCAATTATTGATTTGAAACCAGAAGAAAATCTAAATAAGGACGATAACGA
CTTGGACGACATGTGGGCTGCCATTCCCCAAAAGGATGTGCTGAAGATCA
AGTTTGATGTGCAGATTCGCAACGTAATCTAA
back to top

protein sequence of Gvermi12735.t1

>Gvermi12735.t1 ID=Gvermi12735.t1|Name=Gvermi12735.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=494bp
MPTILSTPPPAVVPEPSTPPPLHTTNSIAIAQSHRDATENFFTCEPPRRF
IFRSQLDKASTETLKITNNSPETLLYKVKTNEHRTYAVKSGCGLIEPHTT
AEVQIIQRPLRTFPRAQDVARHRFLVVAAPISSTPNRSTANPNAAVDLWN
LVPSSAVRKRTMGVIVKQSAFYIPLDKLVTFKPTTLAFVPSTNPNGSCCS
HLDVTNISEYPIVFKMKTTNQMGYVVRPRVGIIDPKQSFRIELSSQPKSK
RMDINGEITANPIVPVSRPTSHDKFKLEVAAVHSENLLGNVTPQDLWPRV
SAGDISTVLFPVLRNADPRKLSPSELPDRAAHRLQDAFKKLNANGSAGKL
QLSSSFMDTLEDVLFWTPKILRLRAENDAEQQPSILHLSNISERTLLYRI
ITKNKGLYEIYPEKDIIAAYDSLNVNVSVQNLKFSSNKWEALSDDASIEV
AIIDLKPEENLNKDDNDLDDMWAAIPQKDVLKIKFDVQIRNVI*
back to top

mRNA from alignment at ScGOVlb_425:1279661..1281142-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12735.t1 ID=Gvermi12735.t1|Name=Gvermi12735.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1482bp|location=Sequence derived from alignment at ScGOVlb_425:1279661..1281142- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCACCATTCTCAGCACCCCGCCGCCGGCTGTCGTCCCGGAGCCCAG
CACGCCCCCGCCGCTCCACACCACCAACTCCATTGCCATAGCCCAGTCAC
ACCGCGACGCCACGGAGAACTTCTTTACCTGCGAGCCGCCACGTCGCTTC
ATCTTCCGCTCCCAGCTAGACAAAGCGTCCACTGAGACGCTGAAGATTAC
AAACAACTCCCCTGAGACTCTGTTGTACAAGGTGAAGACCAACGAGCATC
GCACGTATGCCGTCAAGTCTGGCTGCGGTCTCATTGAGCCGCACACTACC
GCTGAGGTTCAGATTATCCAGCGTCCTCTTCGAACGTTTCCTCGGGCCCA
GGATGTGGCTCGCCACCGCTTCCTGGTCGTTGCCGCCCCCATCAGTTCCA
CCCCGAATCGCTCCACTGCCAACCCGAACGCCGCAGTCGACCTCTGGAAC
CTCGTGCCGAGCTCGGCCGTCCGCAAGCGTACCATGGGTGTCATAGTCAA
GCAGAGCGCGTTTTACATCCCGCTGGACAAGCTTGTCACCTTTAAGCCAA
CCACACTTGCGTTTGTGCCCTCCACAAACCCGAATGGTTCATGCTGTTCA
CATTTGGACGTGACGAACATTTCAGAGTATCCGATCGTTTTCAAGATGAA
GACTACCAATCAGATGGGCTACGTCGTCCGCCCTCGTGTCGGAATCATTG
ACCCTAAGCAGAGTTTCCGAATTGAGCTTTCGTCCCAGCCCAAGTCTAAG
CGAATGGACATTAATGGAGAGATTACCGCCAACCCTATTGTGCCCGTCAG
CAGGCCCACTTCCCATGACAAGTTCAAACTCGAGGTAGCTGCCGTCCACT
CCGAGAACCTTCTTGGAAATGTCACGCCGCAAGATCTGTGGCCCAGAGTT
TCGGCCGGCGACATAAGCACCGTGCTCTTCCCCGTGTTGCGAAATGCAGA
TCCTCGCAAGCTCAGCCCCTCCGAACTGCCGGACCGTGCCGCCCATCGGT
TGCAGGACGCTTTTAAGAAACTGAACGCGAACGGCAGCGCTGGGAAGTTA
CAACTGTCGAGCTCGTTCATGGATACTTTGGAAGATGTTCTGTTCTGGAC
GCCCAAGATTTTGCGTCTCCGGGCTGAAAATGATGCCGAGCAACAGCCGT
CAATTCTGCACCTCAGCAATATTTCCGAGAGAACTTTATTGTATCGGATC
ATCACCAAAAACAAGGGTCTTTACGAGATATACCCAGAGAAGGATATTAT
TGCGGCGTATGATTCGCTGAATGTGAATGTGAGTGTGCAGAATCTGAAGT
TCTCGTCCAACAAATGGGAGGCGTTGTCGGATGATGCTTCTATCGAGGTT
GCAATTATTGATTTGAAACCAGAAGAAAATCTAAATAAGGACGATAACGA
CTTGGACGACATGTGGGCTGCCATTCCCCAAAAGGATGTGCTGAAGATCA
AGTTTGATGTGCAGATTCGCAACGTAATCTAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_425:1279661..1281142-

>Gvermi12735.t1 ID=Gvermi12735.t1|Name=Gvermi12735.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1482bp|location=Sequence derived from alignment at ScGOVlb_425:1279661..1281142- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCACCATTCTCAGCACCCCGCCGCCGGCTGTCGTCCCGGAGCCCAG
CACGCCCCCGCCGCTCCACACCACCAACTCCATTGCCATAGCCCAGTCAC
ACCGCGACGCCACGGAGAACTTCTTTACCTGCGAGCCGCCACGTCGCTTC
ATCTTCCGCTCCCAGCTAGACAAAGCGTCCACTGAGACGCTGAAGATTAC
AAACAACTCCCCTGAGACTCTGTTGTACAAGGTGAAGACCAACGAGCATC
GCACGTATGCCGTCAAGTCTGGCTGCGGTCTCATTGAGCCGCACACTACC
GCTGAGGTTCAGATTATCCAGCGTCCTCTTCGAACGTTTCCTCGGGCCCA
GGATGTGGCTCGCCACCGCTTCCTGGTCGTTGCCGCCCCCATCAGTTCCA
CCCCGAATCGCTCCACTGCCAACCCGAACGCCGCAGTCGACCTCTGGAAC
CTCGTGCCGAGCTCGGCCGTCCGCAAGCGTACCATGGGTGTCATAGTCAA
GCAGAGCGCGTTTTACATCCCGCTGGACAAGCTTGTCACCTTTAAGCCAA
CCACACTTGCGTTTGTGCCCTCCACAAACCCGAATGGTTCATGCTGTTCA
CATTTGGACGTGACGAACATTTCAGAGTATCCGATCGTTTTCAAGATGAA
GACTACCAATCAGATGGGCTACGTCGTCCGCCCTCGTGTCGGAATCATTG
ACCCTAAGCAGAGTTTCCGAATTGAGCTTTCGTCCCAGCCCAAGTCTAAG
CGAATGGACATTAATGGAGAGATTACCGCCAACCCTATTGTGCCCGTCAG
CAGGCCCACTTCCCATGACAAGTTCAAACTCGAGGTAGCTGCCGTCCACT
CCGAGAACCTTCTTGGAAATGTCACGCCGCAAGATCTGTGGCCCAGAGTT
TCGGCCGGCGACATAAGCACCGTGCTCTTCCCCGTGTTGCGAAATGCAGA
TCCTCGCAAGCTCAGCCCCTCCGAACTGCCGGACCGTGCCGCCCATCGGT
TGCAGGACGCTTTTAAGAAACTGAACGCGAACGGCAGCGCTGGGAAGTTA
CAACTGTCGAGCTCGTTCATGGATACTTTGGAAGATGTTCTGTTCTGGAC
GCCCAAGATTTTGCGTCTCCGGGCTGAAAATGATGCCGAGCAACAGCCGT
CAATTCTGCACCTCAGCAATATTTCCGAGAGAACTTTATTGTATCGGATC
ATCACCAAAAACAAGGGTCTTTACGAGATATACCCAGAGAAGGATATTAT
TGCGGCGTATGATTCGCTGAATGTGAATGTGAGTGTGCAGAATCTGAAGT
TCTCGTCCAACAAATGGGAGGCGTTGTCGGATGATGCTTCTATCGAGGTT
GCAATTATTGATTTGAAACCAGAAGAAAATCTAAATAAGGACGATAACGA
CTTGGACGACATGTGGGCTGCCATTCCCCAAAAGGATGTGCTGAAGATCA
AGTTTGATGTGCAGATTCGCAACGTAATCTAA
back to top