Gvermi12847.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gvermi12847.t1
Unique Name	Gvermi12847.t1
Type	polypeptide
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	418

Homology

[Close]

BLAST of Gvermi12847.t1 vs. uniprot
Match: R7QDL8_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QDL8_CHOCR)

HSP 1 Score: 194 bits (494), Expect = 1.060e-53
Identity = 170/439 (38.72%), Postives = 217/439 (49.43%), Query Frame = 0

Query:   48 MPRGRSYHGKPLSAAAQAAQQGYFARKAAKMYAERKKAAATAGAATSPPSAHTDSVTEPDTAAVLKPANHIEHQPADVINITVDAEGVKIDENKPRPSPMIARNNSRARMTRSSSRQRTIHPRTDDKENLITDA----RLDAHIEAYFNRKRAAVVGATVQPTESRLDDQSTTSNHSWDGSMPRRRNSRSVIQRDHTINQRVSPSMG----------AKPSTTATSPRH--------VTLGQACNPEA----------------------PAKEHDVNEQH---------------NAPQSPDSS-----------------------THSTCEQGSDAAASSELPSNSKWCDECAGVGMHIAALLSELQTQRPVPEAGAADVGSSSGSGAKKGWKSMVTQTVLGDSKSKIS-EKAKLQQEINVLRATVDFLYKKIERL 403
            MPRGRS+HG      AQAAQ G+  R AAKM AE+KK A  A          +D     DT  V K     E +P DVINITVDA+GV ID  K     M  R+NSR+RMTRS+S+ R    R DDKEN+  D      ++A + AYF RKR+  +    + TE+  D+ S     SWDGSMP+R++SRS I  D  +  + S +            A PS T  + R           L ++   E                       P+ E    +Q+               N P S   S                        HS   +        E+P++ KWCD+CAG+G+HIAALLS+L   R   ++  +  GSSS   +KKGWKSMVTQT+LGDSKSK S EKA+LQQEINVL+ATVDFLYKK+E L
Sbjct:   43 MPRGRSFHGSRNLTPAQAAQDGFHHRLAAKMLAEKKKKAVAA---------QSDRQAL-DTRDVDK-----EAEPTDVINITVDAKGVMIDSAKGTTQGMGGRSNSRSRMTRSTSKSRNSFRRADDKENITADVPSFKAVEADVAAYFGRKRSVDLSRRKRDTEN--DNLS-----SWDGSMPKRQSSRSFI--DRKVGTKTSATQNGEAEARVMSLAPPSDTDVNDRPRRRRSQKLAALKKSLEEEGTKIEALKQQFSAVDLNGTYQNNPSDEDITGKQNSQTTIRADARLEAQANTPLSGIRSLQAGGCVKIRREMNAGNEAISRGVHSVRAEECPDRNGREVPASGKWCDDCAGLGLHIAALLSQLDKARSTTDS--SSEGSSSSCNSKKGWKSMVTQTMLGDSKSKSSTEKARLQQEINVLKATVDFLYKKVETL 455

The following BLAST results are available for this feature:

BLAST of Gvermi12847.t1 vs. uniprot

BLAST of Gvermi12847.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
R7QDL8_CHOCR	1.060e-53	38.72	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 379..406
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 285..310
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 206..265
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 202..310
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..111

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1789240..1790493 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12847.t1	Gvermi12847.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	mRNA	ScGOVlb_425 1789240..1790493 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gvermi12847.t1 ID=Gvermi12847.t1|Name=Gvermi12847.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=418bp
MAAVQSSSEMQPAPAPSSFSPPPRSRSQRKLPRPGTFSHARLPKTPAMPR
GRSYHGKPLSAAAQAAQQGYFARKAAKMYAERKKAAATAGAATSPPSAHT
DSVTEPDTAAVLKPANHIEHQPADVINITVDAEGVKIDENKPRPSPMIAR
NNSRARMTRSSSRQRTIHPRTDDKENLITDARLDAHIEAYFNRKRAAVVG
ATVQPTESRLDDQSTTSNHSWDGSMPRRRNSRSVIQRDHTINQRVSPSMG
AKPSTTATSPRHVTLGQACNPEAPAKEHDVNEQHNAPQSPDSSTHSTCEQ
GSDAAASSELPSNSKWCDECAGVGMHIAALLSELQTQRPVPEAGAADVGS
SSGSGAKKGWKSMVTQTVLGDSKSKISEKAKLQQEINVLRATVDFLYKKI
ERLETNDSSSATSASSR*