Gvermi12675.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12675.t1
Unique Name	Gvermi12675.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	406

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:329818..331035 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5334.XP_003028420.1
Preferred name	MON2
PFAMs	DCB,Mon2_C,Sec7_N
Max annot lvl	4751\|Fungi
GOs	GO:0003674,GO:0005085,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005794,GO:0005802,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006892,GO:0006895,GO:0006897,GO:0007034,GO:0008104,GO:0008150,GO:0010008,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016482,GO:0019898,GO:0019899,GO:0031090,GO:0031410,GO:0031901,GO:0031982,GO:0031984,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0051020,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065007,GO:0065009,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0072665,GO:0072666,GO:0097708,GO:0098588,GO:0098657,GO:0098772,GO:0098791,GO:0098805
Evalue	2.07e-05
EggNOG OGs	KOG1848@1\|root,KOG1848@2759\|Eukaryota,38EK8@33154\|Opisthokonta,3NUAH@4751\|Fungi,3UYSI@5204\|Basidiomycota,227ID@155619\|Agaricomycetes,3W3UX@5338\|Agaricales
Description	C-terminal region of Mon2 protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12675	Gvermi12675	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 329818..331035 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12675.t1.start1	Gvermi12675.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 329818..329820 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12675.t1.CDS1	Gvermi12675.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 329818..331035 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12675.t1.exon1	Gvermi12675.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 329818..331035 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12675.t1.stop1	Gvermi12675.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 331033..331035 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12675.t1	Gvermi12675.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 329818..331035 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:329818..331035+
coding sequence from alignment at ScGOVlb_425:329818..331035+

mRNA sequence

>Gvermi12675.t1 ID=Gvermi12675.t1|Name=Gvermi12675.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=406bp
LCSPCFDDDITLKLLQTLLSLLTVRPYVCALSDPNLSRAFSMLFHLRSVR
STSASNPASSALSAISHFSTHAQAPTPSTPNPTPPADRGVIEHTAHAAFR
QVASDLFAAAAEAAVRTAVERHAASGQFIPLAAFPSEATAAFNLFLDLCH
AIAAEPCHWLSSLTPDPAHPLHLTLAIEVIDDSLASNIALFAAQPVFSEL
LLARLCPALHKLLSTTSHKPTLKSLLSLVVTLVRNYWRNLRPDTETFCHM
LANLARVPRPNANAATRAMESWRPIYAMEALRCIFSATASDSSPLVDFVC
AYDLADGSAAKCVAGVLDTVAHDISLVQDCQISLLPPAPITAAMKPFAKL
IANQLEFVVAIAIGLHVQIVNAAADAVRNNLISVAVQKRSISRFIMIENS
ELARD*

spliced messenger RNA

>Gvermi12675.t1 ID=Gvermi12675.t1|Name=Gvermi12675.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1218bp|location=Sequence derived from alignment at ScGOVlb_425:329818..331035+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGTGCTCCCCGTGCTTCGACGACGACATCACCCTCAAACTGCTGCAAAC
TTTGTTGAGTTTGCTTACCGTGCGCCCATACGTCTGCGCCCTGTCGGACC
CTAATCTCTCGCGCGCCTTTTCCATGCTCTTCCACCTGCGATCTGTGCGA
TCCACCTCGGCCTCAAACCCGGCCTCCTCCGCCCTGTCCGCCATTTCGCA
CTTCTCCACTCACGCCCAAGCCCCAACGCCGTCCACCCCAAACCCCACCC
CGCCAGCCGATCGGGGCGTCATTGAGCACACCGCGCACGCCGCCTTTCGC
CAGGTCGCTTCCGACTTGTTTGCCGCCGCTGCTGAGGCCGCCGTGCGAAC
CGCCGTTGAGCGCCATGCCGCAAGCGGCCAGTTCATTCCATTGGCTGCCT
TCCCATCTGAGGCCACCGCCGCCTTCAACCTCTTCCTTGACTTGTGCCAC
GCCATTGCTGCCGAACCCTGCCACTGGCTTTCTTCCCTCACCCCCGACCC
GGCCCATCCGCTGCACCTCACTCTTGCGATCGAGGTCATTGACGACTCTC
TTGCCTCCAACATCGCCCTCTTCGCCGCCCAGCCCGTGTTTTCCGAGCTG
CTCTTGGCCCGTCTCTGCCCCGCCTTGCACAAACTCTTGAGCACCACGTC
GCACAAACCCACCCTCAAATCGCTCCTCAGCCTTGTCGTCACGCTTGTGC
GCAACTATTGGCGTAACCTCCGCCCAGACACTGAGACCTTTTGCCACATG
CTCGCCAACCTGGCGCGTGTTCCTCGCCCAAACGCGAACGCCGCGACCCG
TGCCATGGAGTCCTGGCGTCCCATTTACGCTATGGAGGCGTTACGGTGCA
TTTTCAGTGCCACCGCCAGCGACAGTAGTCCGCTCGTCGACTTTGTGTGC
GCTTATGATCTTGCCGATGGCTCCGCCGCCAAATGCGTTGCAGGTGTGCT
TGATACAGTGGCGCACGATATTTCTCTGGTGCAAGACTGTCAGATCAGCC
TGTTGCCGCCGGCCCCCATCACCGCTGCCATGAAACCGTTTGCCAAGCTC
ATTGCGAATCAACTCGAGTTTGTCGTGGCCATTGCCATTGGCTTGCATGT
GCAAATTGTCAATGCTGCCGCGGACGCCGTGCGCAACAATCTTATATCCG
TCGCCGTGCAaaagcgttcaatttcgcgtttcataatgatagaaaattcc
gaactcgcgcgtgattag

protein sequence of Gvermi12675.t1

>Gvermi12675.t1 ID=Gvermi12675.t1|Name=Gvermi12675.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=406bp
LCSPCFDDDITLKLLQTLLSLLTVRPYVCALSDPNLSRAFSMLFHLRSVR
STSASNPASSALSAISHFSTHAQAPTPSTPNPTPPADRGVIEHTAHAAFR
QVASDLFAAAAEAAVRTAVERHAASGQFIPLAAFPSEATAAFNLFLDLCH
AIAAEPCHWLSSLTPDPAHPLHLTLAIEVIDDSLASNIALFAAQPVFSEL
LLARLCPALHKLLSTTSHKPTLKSLLSLVVTLVRNYWRNLRPDTETFCHM
LANLARVPRPNANAATRAMESWRPIYAMEALRCIFSATASDSSPLVDFVC
AYDLADGSAAKCVAGVLDTVAHDISLVQDCQISLLPPAPITAAMKPFAKL
IANQLEFVVAIAIGLHVQIVNAAADAVRNNLISVAVQKRSISRFIMIENS
ELARD*

mRNA from alignment at ScGOVlb_425:329818..331035+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12675.t1 ID=Gvermi12675.t1|Name=Gvermi12675.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1218bp|location=Sequence derived from alignment at ScGOVlb_425:329818..331035+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGTGCTCCCCGTGCTTCGACGACGACATCACCCTCAAACTGCTGCAAAC
TTTGTTGAGTTTGCTTACCGTGCGCCCATACGTCTGCGCCCTGTCGGACC
CTAATCTCTCGCGCGCCTTTTCCATGCTCTTCCACCTGCGATCTGTGCGA
TCCACCTCGGCCTCAAACCCGGCCTCCTCCGCCCTGTCCGCCATTTCGCA
CTTCTCCACTCACGCCCAAGCCCCAACGCCGTCCACCCCAAACCCCACCC
CGCCAGCCGATCGGGGCGTCATTGAGCACACCGCGCACGCCGCCTTTCGC
CAGGTCGCTTCCGACTTGTTTGCCGCCGCTGCTGAGGCCGCCGTGCGAAC
CGCCGTTGAGCGCCATGCCGCAAGCGGCCAGTTCATTCCATTGGCTGCCT
TCCCATCTGAGGCCACCGCCGCCTTCAACCTCTTCCTTGACTTGTGCCAC
GCCATTGCTGCCGAACCCTGCCACTGGCTTTCTTCCCTCACCCCCGACCC
GGCCCATCCGCTGCACCTCACTCTTGCGATCGAGGTCATTGACGACTCTC
TTGCCTCCAACATCGCCCTCTTCGCCGCCCAGCCCGTGTTTTCCGAGCTG
CTCTTGGCCCGTCTCTGCCCCGCCTTGCACAAACTCTTGAGCACCACGTC
GCACAAACCCACCCTCAAATCGCTCCTCAGCCTTGTCGTCACGCTTGTGC
GCAACTATTGGCGTAACCTCCGCCCAGACACTGAGACCTTTTGCCACATG
CTCGCCAACCTGGCGCGTGTTCCTCGCCCAAACGCGAACGCCGCGACCCG
TGCCATGGAGTCCTGGCGTCCCATTTACGCTATGGAGGCGTTACGGTGCA
TTTTCAGTGCCACCGCCAGCGACAGTAGTCCGCTCGTCGACTTTGTGTGC
GCTTATGATCTTGCCGATGGCTCCGCCGCCAAATGCGTTGCAGGTGTGCT
TGATACAGTGGCGCACGATATTTCTCTGGTGCAAGACTGTCAGATCAGCC
TGTTGCCGCCGGCCCCCATCACCGCTGCCATGAAACCGTTTGCCAAGCTC
ATTGCGAATCAACTCGAGTTTGTCGTGGCCATTGCCATTGGCTTGCATGT
GCAAATTGTCAATGCTGCCGCGGACGCCGTGCGCAACAATCTTATATCCG
TCGCCGTGCAaaagcgttcaatttcgcgtttcataatgatagaaaattcc
gaactcgcgcgtgattag

Coding sequence (CDS) from alignment at ScGOVlb_425:329818..331035+

>Gvermi12675.t1 ID=Gvermi12675.t1|Name=Gvermi12675.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1218bp|location=Sequence derived from alignment at ScGOVlb_425:329818..331035+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGTGCTCCCCGTGCTTCGACGACGACATCACCCTCAAACTGCTGCAAAC
TTTGTTGAGTTTGCTTACCGTGCGCCCATACGTCTGCGCCCTGTCGGACC
CTAATCTCTCGCGCGCCTTTTCCATGCTCTTCCACCTGCGATCTGTGCGA
TCCACCTCGGCCTCAAACCCGGCCTCCTCCGCCCTGTCCGCCATTTCGCA
CTTCTCCACTCACGCCCAAGCCCCAACGCCGTCCACCCCAAACCCCACCC
CGCCAGCCGATCGGGGCGTCATTGAGCACACCGCGCACGCCGCCTTTCGC
CAGGTCGCTTCCGACTTGTTTGCCGCCGCTGCTGAGGCCGCCGTGCGAAC
CGCCGTTGAGCGCCATGCCGCAAGCGGCCAGTTCATTCCATTGGCTGCCT
TCCCATCTGAGGCCACCGCCGCCTTCAACCTCTTCCTTGACTTGTGCCAC
GCCATTGCTGCCGAACCCTGCCACTGGCTTTCTTCCCTCACCCCCGACCC
GGCCCATCCGCTGCACCTCACTCTTGCGATCGAGGTCATTGACGACTCTC
TTGCCTCCAACATCGCCCTCTTCGCCGCCCAGCCCGTGTTTTCCGAGCTG
CTCTTGGCCCGTCTCTGCCCCGCCTTGCACAAACTCTTGAGCACCACGTC
GCACAAACCCACCCTCAAATCGCTCCTCAGCCTTGTCGTCACGCTTGTGC
GCAACTATTGGCGTAACCTCCGCCCAGACACTGAGACCTTTTGCCACATG
CTCGCCAACCTGGCGCGTGTTCCTCGCCCAAACGCGAACGCCGCGACCCG
TGCCATGGAGTCCTGGCGTCCCATTTACGCTATGGAGGCGTTACGGTGCA
TTTTCAGTGCCACCGCCAGCGACAGTAGTCCGCTCGTCGACTTTGTGTGC
GCTTATGATCTTGCCGATGGCTCCGCCGCCAAATGCGTTGCAGGTGTGCT
TGATACAGTGGCGCACGATATTTCTCTGGTGCAAGACTGTCAGATCAGCC
TGTTGCCGCCGGCCCCCATCACCGCTGCCATGAAACCGTTTGCCAAGCTC
ATTGCGAATCAACTCGAGTTTGTCGTGGCCATTGCCATTGGCTTGCATGT
GCAAATTGTCAATGCTGCCGCGGACGCCGTGCGCAACAATCTTATATCCG
TCGCCGTGCAaaagcgttcaatttcgcgtttcataatgatagaaaattcc
gaactcgcgcgtgattag