Gvermi12756.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12756.t1
Unique NameGvermi12756.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length227
Homology
BLAST of Gvermi12756.t1 vs. uniprot
Match: R7Q235_CHOCR (RRM domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q235_CHOCR)

HSP 1 Score: 270 bits (691), Expect = 9.720e-89
Identity = 138/226 (61.06%), Postives = 171/226 (75.66%), Query Frame = 0
Query:    2 AGPHAGNRNRPAYSGQARFRFPRQIIELFAPRQPIEFKPPPRKRKLRRISGLAALVHKFEAEAKQK----AKQKDDTPSTSFETPAQRRRRVREERSRQVQKIITKARAEWDPMATRDGVEKTDDAVRTLFVGNVAYTTVEMRLRDEFEVFGAVKKVVMPKDKDGIPRGYAFVEFERERDVEVAYRKANGIKVDGRRLMVDVERGRTVKGWYPNRLDGPHNSAARR 223
            +GPHAGNRNRPAYSGQ RFRFP+QII+LFAPR+PIEFKPPPR+RKL+ ++GL   V  FE    Q+    A   +  P TSFETPAQRRRRVR E  R+V +I+ K R EWDP +  D   KT +A  TLFV N+ +  VE  LRD FEV+G V  VVMP D++ + RGYAFVEFERERD+++A+R+ANG++V GRR++VDVERGRTV GW PNRLDGP+N+  R+
Sbjct:    3 SGPHAGNRNRPAYSGQQRFRFPKQIIQLFAPRKPIEFKPPPRQRKLKPMTGLGTFVSMFEDPKDQRDTKMADGNEGKPETSFETPAQRRRRVRNEALRKVSEIVEKRREEWDPKS--DDSAKTKNAYSTLFVANLPFAMVEKSLRDVFEVYGPVATVVMPSDREEVSRGYAFVEFERERDMKIAWREANGMRVGGRRILVDVERGRTVDGWLPNRLDGPNNACTRK 226          
BLAST of Gvermi12756.t1 vs. uniprot
Match: A0A2V3IFS2_9FLOR (U1 small nuclear ribonucleoprotein 70 kDa n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFS2_9FLOR)

HSP 1 Score: 233 bits (594), Expect = 1.710e-70
Identity = 129/206 (62.62%), Postives = 153/206 (74.27%), Query Frame = 0
Query:    1 MAGPHAGNRNRPAYSGQARFRFPRQIIELFAPRQPIEFKPPPRKRKLRRISGLAALVHKF--EAEAKQKAKQKDDTPSTSFETPAQRRRRVREERSRQVQKIITKARAEW------DPMATRDGVEKTDDAVRTLFVGNVAYTTVEMRLRDEFEVFGAVKKVVMPKDKDGIPRGYAFVEFERERDVEVAYRKANGIKVDGRRLMVD 198
            MAGPHAGNRNRPAYSGQ RFRFP+QI+ELFAPR+PIEFKPPPRKRKLR ++G+AALV     E + +++A +         ETPAQRRRRVR+E+  +V+  +   R EW      D    RD  +KT  AV TLFVGNVAY T+EMRLR++FE FG V KVVMPKD  G+PRGYAFVEFER+R VE AYR+ANGIK+DGRR   D
Sbjct:    1 MAGPHAGNRNRPAYSGQTRFRFPKQIVELFAPRKPIEFKPPPRKRKLRAMTGVAALVGTLRDEKDGEERAGK------GGLETPAQRRRRVRDEKLLEVEVKVEHGRKEWKKGQWADKEGERD--DKTQTAVNTLFVGNVAYGTMEMRLREQFETFGKVVKVVMPKDGQGVPRGYAFVEFERQRAVENAYRQANGIKLDGRRWSPD 198          
BLAST of Gvermi12756.t1 vs. uniprot
Match: A0A0L0T880_ALLM3 (RRM domain-containing protein n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0T880_ALLM3)

HSP 1 Score: 162 bits (411), Expect = 3.600e-46
Identity = 95/199 (47.74%), Postives = 125/199 (62.81%), Query Frame = 0
Query:   21 RFPRQIIELFAPRQPIEFKPP----PRKRKLRRISGLAALVHKFEAEAKQKAKQKDDTPSTSFETPAQRRRRVREERSRQVQKIITKARAEWDPMATRDGVEKTDDAVRTLFVGNVAYTTVEMRLRDEFEVFGAVKKVVMPKDKDGIPRGYAFVEFERERDVEVAYRKANGIKVDGRRLMVDVERGRTVKGWYPNRLDG 215
            R P  ++  FAPR PIE+ PP    P +R+  R SG+A L+    AE K       D     +E+  ++R+R +EER  + ++ I K  A W+P    D    T D  +TLFVG +AYTT +  LR EFE FG VK + +  D DG  RGYAFVEF+RE+D++ AYR A+GIK+DGRR++VDVERGRTVKGW P RL G
Sbjct:    4 RLPPNLLARFAPRPPIEYLPPLDRAPGEREGPRYSGVADLM----AELKM-----HDPDYVPWESAEEKRQRKKEERELKAKEEIEKRLATWNP---HDDAHATSDPFKTLFVGRLAYTTTDASLRKEFEYFGPVKTIKLVVDSDGKSRGYAFVEFDREKDMKAAYRDADGIKLDGRRIIVDVERGRTVKGWKPRRLGG 190          
BLAST of Gvermi12756.t1 vs. uniprot
Match: A0A5D6XVV7_9STRA (RRM domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XVV7_9STRA)

HSP 1 Score: 162 bits (411), Expect = 3.230e-45
Identity = 90/200 (45.00%), Postives = 121/200 (60.50%), Query Frame = 0
Query:   16 GQARFRFPRQIIELFAPRQPIEFKPPPRKRKLRRISGLAALVHKFEAEAKQKAKQKDDTPSTSFETPAQRRRRVREERSRQVQKIITKARAEWDPMATRDGVEKTDDAVRTLFVGNVAYTTVEMRLRDEFEVFGAVKKVVMPKDKDGIPRGYAFVEFERERDVEVAYRKANGIKVDGRRLMVDVERGRTVKGWYPNRLDG 215
            G A    P  +  LF P  P+EF+P   KRK+   SG+AA   +FEAEA          P    ETP +RR RVR ER  +    +   + +WDP A  +   KT+DA +TLFVG ++Y T E +LR EFE +G VK+  + +D DG  RGY FVE+E E D++ AY+ A+G K+DGRR++VDVERGRTV+ W P +  G
Sbjct:   28 GPAISHLPVHLKALFEPNAPLEFRPKLVKRKMPPYSGIAAFAEQFEAEA--------PPPREVSETPKERRERVRAERMAKADAEMLANKEKWDPNAPDE--RKTEDAYKTLFVGRISYETTEKQLRQEFEQYGPVKRARLVEDPDGKSRGYGFVEYENESDLKAAYKLADGKKIDGRRVVVDVERGRTVRDWLPRKFGG 217          
BLAST of Gvermi12756.t1 vs. uniprot
Match: A0A4U5MD69_STECR (U1 small nuclear ribonucleoprotein 70 kDa n=1 Tax=Steinernema carpocapsae TaxID=34508 RepID=A0A4U5MD69_STECR)

HSP 1 Score: 161 bits (407), Expect = 1.070e-44
Identity = 87/197 (44.16%), Postives = 121/197 (61.42%), Query Frame = 0
Query:   23 PRQIIELFAPRQPIEFKPPPRK----RKLRRISGLAALVHKFEAEAKQKAKQKDDTPSTSFETPAQRRRRVREERSRQVQKIITKARAEWDPMATRDGVEKTDDAVRTLFVGNVAYTTVEMRLRDEFEVFGAVKKVVMPKDKDGIPRGYAFVEFERERDVEVAYRKANGIKVDGRRLMVDVERGRTVKGWYPNRLDG 215
            P  ++ LFAPR P+EF+PP  +    RK  ++ GLA  VH FE       +  +  P    ET  QR+ R R+E+   +   I +  A W P    +  + T DA +TLFVG ++Y T E +LR EFE +G + K+VM +DK+G PRGYAF+EF  + ++  AY+KA+GIK+DGRR++VD ERGRT K W P RL G
Sbjct:    6 PENLLALFAPRPPLEFRPPVDELIVDRKRPQMDGLAPYVHNFE-------EAHETPPKAEVETKEQRKIRKRKEKDELLAYKIEQGIALWQP---NENAQATSDAYKTLFVGRISYDTTESKLRREFESYGKINKIVMVQDKEGKPRGYAFIEFSSKSEMSAAYKKADGIKIDGRRVVVDYERGRTQKNWLPRRLGG 192          
BLAST of Gvermi12756.t1 vs. uniprot
Match: A0A8D8KTE0_CULPI (U1 small nuclear ribonucleoprotein 70 kDa (Fragment) n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8KTE0_CULPI)

HSP 1 Score: 158 bits (400), Expect = 2.060e-44
Identity = 90/196 (45.92%), Postives = 121/196 (61.73%), Query Frame = 0
Query:   23 PRQIIELFAPRQPIEFKPPP--RKRKLRRISGLAALVHKFEAEAKQKAKQKDDTPSTSFETPAQRRRRVREERSRQVQKIITKARAEWDPMATRDGVEKTDDAVRTLFVGNVAYTTVEMRLRDEFEVFGAVKKVVMPKDKD-GIPRGYAFVEFERERDVEVAYRKANGIKVDGRRLMVDVERGRTVKGWYPNRLDG 215
            P  ++ LFAPR+PI F PPP   K+K +   G+ A +  FE         KD  P T  ET  +R  R R ER+ QV   + +  A WDP         TDD  +TLFV  + Y T E +LR EFE++GA+KK+++ + K+ G PRGYAF+E+E ERD+  AY+ A+G K+DG+R++VDVER RTVKGW P RL G
Sbjct:    6 PPNLLALFAPREPIPFLPPPDNSKKKTQGYLGVGAFLDLFEDP-------KDTPPPTRVETREERIERRRRERAEQVAYKLEREIATWDP---NQQPTATDDPFKTLFVARINYDTSESKLRREFEIYGAIKKIILIQSKESGKPRGYAFIEYEYERDMHSAYKHADGKKIDGKRVLVDVERARTVKGWLPRRLGG 191          
BLAST of Gvermi12756.t1 vs. uniprot
Match: A0A087UV48_STEMI (U1 small nuclear ribonucleoprotein 70 kDa (Fragment) n=1 Tax=Stegodyphus mimosarum TaxID=407821 RepID=A0A087UV48_STEMI)

HSP 1 Score: 157 bits (396), Expect = 2.380e-44
Identity = 91/198 (45.96%), Postives = 124/198 (62.63%), Query Frame = 0
Query:   23 PRQIIELFAPRQPIEFKPP----PRKRKLRRISGLAALVHKFEAEAKQKAKQKDDTPSTSFETPAQRRRRVREERSRQVQKIITKARAEWDPMATRDGVEKTDDAVRTLFVGNVAYTTVEMRLRDEFEVFGAVKKVVMPKDKD-GIPRGYAFVEFERERDVEVAYRKANGIKVDGRRLMVDVERGRTVKGWYPNRLDG 215
            P  ++ LFAPR PI + PP    P ++K    +G+A+ V++FE         K+  P    ET  +R+ R R+E++ QV   + +  A W P A       T D  +TLFV  V Y T E +LR EFEV+G +KK+V+  DK+ G PRGYAF+E+ERERD+  AY+ A+G K+DGRR++VDVERGRTVKGW P RL G
Sbjct:    6 PPNLLALFAPRDPIPYLPPVDKLPYEKKTAGYTGIASFVNQFEDP-------KNTPPPLRIETREERQERKRKEKAEQVAYKLEQDIALWSPAANPAA---TTDPYKTLFVARVNYDTSESKLRREFEVYGHIKKIVIVHDKNTGKPRGYAFIEYERERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWLPRRLGG 193          
BLAST of Gvermi12756.t1 vs. uniprot
Match: T1H1P4_MEGSC (U1 small nuclear ribonucleoprotein 70 kDa n=1 Tax=Megaselia scalaris TaxID=36166 RepID=T1H1P4_MEGSC)

HSP 1 Score: 158 bits (400), Expect = 7.410e-44
Identity = 86/197 (43.65%), Postives = 121/197 (61.42%), Query Frame = 0
Query:   23 PRQIIELFAPRQPIEFKPP----PRKRKLRRISGLAALVHKFEAEAKQKAKQKDDTPSTSFETPAQRRRRVREERSRQVQKIITKARAEWDPMATRDGVEKTDDAVRTLFVGNVAYTTVEMRLRDEFEVFGAVKKVVMPKDKDGIPRGYAFVEFERERDVEVAYRKANGIKVDGRRLMVDVERGRTVKGWYPNRLDG 215
            P  +++LFA R+PI + PP    P ++K R   G+   ++ FE         KD  P T  ET A+R  R R E++ QV   + +  A WDP A  +    T+D  +TLFV  + Y T E +LR EFE++G +K ++M  DK+  PRGYAF+E+E ERD+  AY+ A+G K+DG+R++VDVER RTVKGW P RL G
Sbjct:    6 PPNLLQLFAAREPIPYLPPVDKLPHEKKTRGYLGVGNFLNSFEDP-------KDTPPCTRVETRAERLERRRREKAEQVAYKLEREIAIWDPQALANA---TEDPFKTLFVSRINYDTSESKLRREFEIYGPIKNIIMISDKNSKPRGYAFIEYEHERDMHSAYKHADGKKIDGKRVLVDVERARTVKGWLPRRLGG 192          
BLAST of Gvermi12756.t1 vs. uniprot
Match: A0A6G0M502_9STRA (RRM domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0M502_9STRA)

HSP 1 Score: 156 bits (394), Expect = 1.350e-43
Identity = 90/221 (40.72%), Postives = 129/221 (58.37%), Query Frame = 0
Query:    1 MAGPHAGNRNRP------AYSGQARFRFPRQIIELFAPRQPIEFKPPPRKRKLRRISGLAALVHKFEAEAKQKAKQKDDTPSTSFETPAQRRRRVREERSRQVQKIITKARAEWDPMATRDGVEKTDDAVRTLFVGNVAYTTVEMRLRDEFEVFGAVKKVVMPKDKDGIPRGYAFVEFERERDVEVAYRKANGIKVDGRRLMVDVERGRTVKGWYPNRLDG 215
            M+ P+A  +  P      +  G A    P  +  +F P  P++  P   KRK+   +GLAA +  FE+E           P    ETP +RR R R+E+   V+  + + RA+WDP A  +   KT DA +TLFVG ++Y T E +LR EFE +G VK V + +D +G  RGY FVE+E+E D++ AY+ A+G K+DGRR++VDVERGRTV+ W P +  G
Sbjct:    1 MSNPNAHRKMTPKGQMSSSGMGPAIMHLPTHLKVMFEPNAPLDHLPRLVKRKMPPYTGLAAFLDAFESET--------PPPRAVQETPKERRERRRQEKMAAVEAKMQEDRAKWDPNA--EDPRKTQDAYKTLFVGRISYETTEQQLRHEFEQYGPVKSVRLVEDPEGKSRGYGFVEYEKEEDMKAAYKYADGKKIDGRRVVVDVERGRTVRDWLPRKFGG 211          
BLAST of Gvermi12756.t1 vs. uniprot
Match: A0A6A3TRP9_9STRA (RRM domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3TRP9_9STRA)

HSP 1 Score: 156 bits (394), Expect = 1.550e-43
Identity = 90/221 (40.72%), Postives = 129/221 (58.37%), Query Frame = 0
Query:    1 MAGPHAGNRNRP------AYSGQARFRFPRQIIELFAPRQPIEFKPPPRKRKLRRISGLAALVHKFEAEAKQKAKQKDDTPSTSFETPAQRRRRVREERSRQVQKIITKARAEWDPMATRDGVEKTDDAVRTLFVGNVAYTTVEMRLRDEFEVFGAVKKVVMPKDKDGIPRGYAFVEFERERDVEVAYRKANGIKVDGRRLMVDVERGRTVKGWYPNRLDG 215
            M+ P+A  +  P      +  G A    P  +  +F P  P++  P   KRK+   +GLAA +  FE+E           P    ETP +RR R R+E+   V+  + + RA+WDP A  +   KT DA +TLFVG ++Y T E +LR EFE +G VK V + +D +G  RGY FVE+E+E D++ AY+ A+G K+DGRR++VDVERGRTV+ W P +  G
Sbjct:    1 MSNPNAHRKMTPKGQMSSSGMGPAIMHLPTHLKVMFEPNAPLDHLPRLVKRKMPPYTGLAAFLDAFESET--------PPPRAVQETPKERRERRRQEKMAAVEAKMQEDRAKWDPNA--EDPRKTQDAYKTLFVGRISYETTEQQLRHEFEQYGPVKSVRLVEDPEGKSRGYGFVEYEKEEDMKAAYKYADGKKIDGRRVVVDVERGRTVRDWLPRKFGG 211          
The following BLAST results are available for this feature:
BLAST of Gvermi12756.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7Q235_CHOCR9.720e-8961.06RRM domain-containing protein n=1 Tax=Chondrus cri... [more]
A0A2V3IFS2_9FLOR1.710e-7062.62U1 small nuclear ribonucleoprotein 70 kDa n=1 Tax=... [more]
A0A0L0T880_ALLM33.600e-4647.74RRM domain-containing protein n=1 Tax=Allomyces ma... [more]
A0A5D6XVV7_9STRA3.230e-4545.00RRM domain-containing protein n=1 Tax=Pythium bras... [more]
A0A4U5MD69_STECR1.070e-4444.16U1 small nuclear ribonucleoprotein 70 kDa n=1 Tax=... [more]
A0A8D8KTE0_CULPI2.060e-4445.92U1 small nuclear ribonucleoprotein 70 kDa (Fragmen... [more]
A0A087UV48_STEMI2.380e-4445.96U1 small nuclear ribonucleoprotein 70 kDa (Fragmen... [more]
T1H1P4_MEGSC7.410e-4443.65U1 small nuclear ribonucleoprotein 70 kDa n=1 Tax=... [more]
A0A6G0M502_9STRA1.350e-4340.72RRM domain-containing protein n=1 Tax=Phytophthora... [more]
A0A6A3TRP9_9STRA1.550e-4340.72RRM domain-containing protein n=1 Tax=Phytophthora... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 126..198
e-value: 1.3E-22
score: 91.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 127..195
e-value: 3.4E-17
score: 62.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 125..202
score: 18.069229
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 114..225
e-value: 3.7E-28
score: 100.2
IPR022023U1 small nuclear ribonucleoprotein of 70kDa N-terminalPFAMPF12220U1snRNP70_Ncoord: 22..110
e-value: 9.7E-15
score: 55.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..94
NoneNo IPR availablePANTHERPTHR13952:SF5U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDAcoord: 22..215
NoneNo IPR availablePANTHERPTHR13952U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDcoord: 22..215
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 118..219

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1388718..1389398 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12756.t1Gvermi12756.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_425 1388718..1389398 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12756.t1 ID=Gvermi12756.t1|Name=Gvermi12756.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=227bp
MAGPHAGNRNRPAYSGQARFRFPRQIIELFAPRQPIEFKPPPRKRKLRRI
SGLAALVHKFEAEAKQKAKQKDDTPSTSFETPAQRRRRVREERSRQVQKI
ITKARAEWDPMATRDGVEKTDDAVRTLFVGNVAYTTVEMRLRDEFEVFGA
VKKVVMPKDKDGIPRGYAFVEFERERDVEVAYRKANGIKVDGRRLMVDVE
RGRTVKGWYPNRLDGPHNSAARRISR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR022023U1snRNP70_N
IPR035979RBD_domain_sf