Gvermi12705.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12705.t1
Unique NameGvermi12705.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length116
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1077673..1078183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog59894.ENSFALP00000000877
Preferred nameLSM10
PFAMsLSM
Max annot lvl33208|Metazoa
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005683,GO:0007346,GO:0008150,GO:0010564,GO:0015030,GO:0016604,GO:0017069,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045787,GO:0045931,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051726,GO:0065007,GO:0070013,GO:0071208,GO:0071209,GO:0090068,GO:0097159,GO:0120114,GO:1900087,GO:1901363,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902806,GO:1902808,GO:1990904,GO:2000045
Evalue3.04e-12
EggNOG OGsCOG1958@1|root,KOG3428@2759|Eukaryota,3A8FY@33154|Opisthokonta,3BTXX@33208|Metazoa,3DAQD@33213|Bilateria,48R38@7711|Chordata,49MP8@7742|Vertebrata,4GWTF@8782|Aves
DescriptionLSM10, U7 small nuclear RNA associated
COG categoryA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12705Gvermi12705Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1077673..1078183 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12705.t1Gvermi12705.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1077673..1078183 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12705.t1.start1Gvermi12705.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1077673..1077675 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12705.t1.CDS1Gvermi12705.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1077673..1077803 +
Gvermi12705.t1.CDS2Gvermi12705.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1077881..1078037 +
Gvermi12705.t1.CDS3Gvermi12705.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1078124..1078183 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12705.t1.exon1Gvermi12705.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1077673..1077803 +
Gvermi12705.t1.exon2Gvermi12705.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1077881..1078037 +
Gvermi12705.t1.exon3Gvermi12705.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1078124..1078183 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12705.t1.intron1Gvermi12705.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1077804..1077880 +
Gvermi12705.t1.intron2Gvermi12705.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1078038..1078123 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12705.t1.stop1Gvermi12705.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1078181..1078183 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12705.t1 ID=Gvermi12705.t1|Name=Gvermi12705.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=116bp
MGSSGQATSLTFLLHALCGRKLYFELRNNIEVEGTLDSVDANMNVTISDV
SYKMPSQHVTSPPAPLFFELLYVAARHITFVHIPDDIDVRETMDLYSKRL
EAVKYASSGGKRRKT*
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spliced messenger RNA

>Gvermi12705.t1 ID=Gvermi12705.t1|Name=Gvermi12705.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=348bp|location=Sequence derived from alignment at ScGOVlb_425:1077673..1078183+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAGCAGCGGACAAGCCACCAGCCTCACCTTTCTTCTCCACGCGCT
GTGCGGTCGTAAGCTCTACTTCGAGCTTCGAAACAATATTGAGGTCGAGG
GCACGTTGGACTCTGTAGATGCAAACATGAATGTGACAATATCGGATGTA
TCCTATAAAATGCCCTCTCAACATGTCACGAGCCCTCCTGCCCCTCTTTT
CTTCGAACTTCTCTACGTTGCAGCGCGACACATTACCTTTGTTCACATCC
CAGACGATATAGACGTTCGTGAAACCATGGATCTATACTCCAAACGATTG
GAAGCAGTCAAGTACGCTAGTTCCGGAGGAAAGCGGAGAAAAACCTAG
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protein sequence of Gvermi12705.t1

>Gvermi12705.t1 ID=Gvermi12705.t1|Name=Gvermi12705.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=116bp
MGSSGQATSLTFLLHALCGRKLYFELRNNIEVEGTLDSVDANMNVTISDV
SYKMPSQHVTSPPAPLFFELLYVAARHITFVHIPDDIDVRETMDLYSKRL
EAVKYASSGGKRRKT*
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mRNA from alignment at ScGOVlb_425:1077673..1078183+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12705.t1 ID=Gvermi12705.t1|Name=Gvermi12705.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=511bp|location=Sequence derived from alignment at ScGOVlb_425:1077673..1078183+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCAGCAGCGGACAAGCCACCAGCCTCACCTTTCTTCTCCACGCGCT
GTGCGGTCGTAAGCTCTACTTCGAGCTTCGAAACAATATTGAGGTCGAGG
GCACGTTGGACTCTGTAGATGCAAACATGAAGTAAAGTGCTCTTCTCACA
ACAGTTGGCCTTTTTACAACAATAAGCTGACAAAGTGCTCCCCATGGCCG
CGTATTAGTGTGACAATATCGGATGTATCCTATAAAATGCCCTCTCAACA
TGTCACGAGCCCTCCTGCCCCTCTTTTCTTCGAACTTCTCTACGTTGCAG
CGCGACACATTACCTTTGTTCACATCCCAGACGATATAGACGTTCGTGAA
ACCATGGATCTATACGTAAGTCCCATGCACCCTTCCAGAAAACCGCGCGC
TTTGCAGCACTATTAGGTTTGGACTGACCAGCAACACAAATATGAGAGCA
GTCCAAACGATTGGAAGCAGTCAAGTACGCTAGTTCCGGAGGAAAGCGGA
GAAAAACCTAG
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Coding sequence (CDS) from alignment at ScGOVlb_425:1077673..1078183+

>Gvermi12705.t1 ID=Gvermi12705.t1|Name=Gvermi12705.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=348bp|location=Sequence derived from alignment at ScGOVlb_425:1077673..1078183+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCAGCAGCGGACAAGCCACCAGCCTCACCTTTCTTCTCCACGCGCT
GTGCGGTCGTAAGCTCTACTTCGAGCTTCGAAACAATATTGAGGTCGAGG
GCACGTTGGACTCTGTAGATGCAAACATGAATGTGACAATATCGGATGTA
TCCTATAAAATGCCCTCTCAACATGTCACGAGCCCTCCTGCCCCTCTTTT
CTTCGAACTTCTCTACGTTGCAGCGCGACACATTACCTTTGTTCACATCC
CAGACGATATAGACGTTCGTGAAACCATGGATCTATACTCCAAACGATTG
GAAGCAGTCAAGTACGCTAGTTCCGGAGGAAAGCGGAGAAAAACCTAG
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