Gvermi3530.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3530.t1
Unique NameGvermi3530.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length323
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:3073143..3074111 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog56110.Oscil6304_2747
Preferred namerpoA
PFAMsRNA_pol_A_CTD,RNA_pol_A_bac,RNA_pol_L
Max annot lvl1117|Cyanobacteria
KEGG rclassRC02795
KEGG koko:K03040
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ModuleM00183
GOsGO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576
Evalue1.05e-135
EggNOG OGsCOG0202@1|root,COG0202@2|Bacteria,1G094@1117|Cyanobacteria,1H8WH@1150|Oscillatoriales
EC2.7.7.6
DescriptionDNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3530Gvermi3530Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 3073143..3074111 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3530.t1.stop1Gvermi3530.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 3073143..3073145 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3530.t1.CDS1Gvermi3530.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 3073143..3074111 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3530.t1.exon1Gvermi3530.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 3073143..3074111 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3530.t1.start1Gvermi3530.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 3074109..3074111 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3530.t1Gvermi3530.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 3073143..3074111 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3530.t1 ID=Gvermi3530.t1|Name=Gvermi3530.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=323bp
MIYTEKSCMTHFQIECVESKIESKRQQYGRFILEPLNKGQAITVGNSLRR
TILSDLEGTAIVAVRIAGINHEFSTITGVREDILEILLNLKEVILKSYSD
KPQIGRIRLQGPAIITTGLFEVPPDIEIIDPQQYIATICNNTIFEMEFRI
EKGSGYKLTRKGFDKKSIDFLQIDAVFMPVRKFNYIVEEKKINSTLIQER
LSLEVWTNGSISPQEAISQGAQILNNLFSPLTDLSFQHVENEENKYEEEI
NQILIEELQLSVRAYNCLKRAQIHSISNLLDYSQEELLEIKNFGQKSAEE
VIEALQNKLGIRLPKEKNTSNA*
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spliced messenger RNA

>Gvermi3530.t1 ID=Gvermi3530.t1|Name=Gvermi3530.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=969bp|location=Sequence derived from alignment at ScGOVlb_41:3073143..3074111- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATATATACTGAGAAATCTTGTATGACCCACTTTCAAATAGAATGTGT
AGAATCAAAAATAGAAAGTAAACGCCAACAATATGGTCGCTTTATTTTAG
AACCGCTTAACAAAGGACAAGCTATAACTGTAGGTAATTCCTTAAGACGA
ACTATTCTATCAGATTTAGAAGGTACTGCTATTGTAGCAGTACGAATTGC
TGGGATTAATCATGAATTTTCAACAATTACAGGAGTACGAGAAGATATTT
TAGAAATTCTACTTAACCTTAAAGAAGTAATATTAAAAAGTTATAGTGAT
AAACCTCAAATAGGCAGAATCAGATTGCAAGGACCTGCTATAATCACTAC
AGGTTTATTTGAAGTACCACCAGACATTGAAATTATTGATCCACAACAAT
ATATAGCTACTATTTGTAATAATACCATCTTTGAAATGGAATTTCGTATT
GAAAAAGGAAGCGGATATAAACTTACAAGAAAAGGTTTCGATAAAAAATC
TATAGATTTTTTACAAATTGATGCAGTATTTATGCCAGTACGCAAATTTA
ATTACATAGTAGAAGAGAAAAAAATCAATTCGACACTGATTCAAGAAAGA
TTGTCTTTAGAAGTTTGGACAAATGGAAGCATATCACCACAAGAAGCAAT
TAGCCAGGGTGCACAAATACTCAATAATTTATTCTCTCCTCTTACTGATC
TAAGTTTTCAACATGTAGAAAATGAAGAAAATAAATATGAAGAAGAAATT
AATCAAATACTAATCGAAGAACTACAATTATCTGTTAGAGCTTACAATTG
TCTTAAGAGAGCTCAAATTCACTCCATATCAAATTTGCTAGATTATTCAC
AGGAAGAACTATTAGAAATTAAAAATTTTGGTCAAAAGTCTGCAGAAGAA
GTAATTGAAGCATTGCAAAATAAACTTGGAATCAGACTACCAAAAGAAAA
AAATACTTCTAATGCTTAA
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protein sequence of Gvermi3530.t1

>Gvermi3530.t1 ID=Gvermi3530.t1|Name=Gvermi3530.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=323bp
MIYTEKSCMTHFQIECVESKIESKRQQYGRFILEPLNKGQAITVGNSLRR
TILSDLEGTAIVAVRIAGINHEFSTITGVREDILEILLNLKEVILKSYSD
KPQIGRIRLQGPAIITTGLFEVPPDIEIIDPQQYIATICNNTIFEMEFRI
EKGSGYKLTRKGFDKKSIDFLQIDAVFMPVRKFNYIVEEKKINSTLIQER
LSLEVWTNGSISPQEAISQGAQILNNLFSPLTDLSFQHVENEENKYEEEI
NQILIEELQLSVRAYNCLKRAQIHSISNLLDYSQEELLEIKNFGQKSAEE
VIEALQNKLGIRLPKEKNTSNA*
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mRNA from alignment at ScGOVlb_41:3073143..3074111-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3530.t1 ID=Gvermi3530.t1|Name=Gvermi3530.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=969bp|location=Sequence derived from alignment at ScGOVlb_41:3073143..3074111- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATATATACTGAGAAATCTTGTATGACCCACTTTCAAATAGAATGTGT
AGAATCAAAAATAGAAAGTAAACGCCAACAATATGGTCGCTTTATTTTAG
AACCGCTTAACAAAGGACAAGCTATAACTGTAGGTAATTCCTTAAGACGA
ACTATTCTATCAGATTTAGAAGGTACTGCTATTGTAGCAGTACGAATTGC
TGGGATTAATCATGAATTTTCAACAATTACAGGAGTACGAGAAGATATTT
TAGAAATTCTACTTAACCTTAAAGAAGTAATATTAAAAAGTTATAGTGAT
AAACCTCAAATAGGCAGAATCAGATTGCAAGGACCTGCTATAATCACTAC
AGGTTTATTTGAAGTACCACCAGACATTGAAATTATTGATCCACAACAAT
ATATAGCTACTATTTGTAATAATACCATCTTTGAAATGGAATTTCGTATT
GAAAAAGGAAGCGGATATAAACTTACAAGAAAAGGTTTCGATAAAAAATC
TATAGATTTTTTACAAATTGATGCAGTATTTATGCCAGTACGCAAATTTA
ATTACATAGTAGAAGAGAAAAAAATCAATTCGACACTGATTCAAGAAAGA
TTGTCTTTAGAAGTTTGGACAAATGGAAGCATATCACCACAAGAAGCAAT
TAGCCAGGGTGCACAAATACTCAATAATTTATTCTCTCCTCTTACTGATC
TAAGTTTTCAACATGTAGAAAATGAAGAAAATAAATATGAAGAAGAAATT
AATCAAATACTAATCGAAGAACTACAATTATCTGTTAGAGCTTACAATTG
TCTTAAGAGAGCTCAAATTCACTCCATATCAAATTTGCTAGATTATTCAC
AGGAAGAACTATTAGAAATTAAAAATTTTGGTCAAAAGTCTGCAGAAGAA
GTAATTGAAGCATTGCAAAATAAACTTGGAATCAGACTACCAAAAGAAAA
AAATACTTCTAATGCTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_41:3073143..3074111-

>Gvermi3530.t1 ID=Gvermi3530.t1|Name=Gvermi3530.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=969bp|location=Sequence derived from alignment at ScGOVlb_41:3073143..3074111- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATATATACTGAGAAATCTTGTATGACCCACTTTCAAATAGAATGTGT
AGAATCAAAAATAGAAAGTAAACGCCAACAATATGGTCGCTTTATTTTAG
AACCGCTTAACAAAGGACAAGCTATAACTGTAGGTAATTCCTTAAGACGA
ACTATTCTATCAGATTTAGAAGGTACTGCTATTGTAGCAGTACGAATTGC
TGGGATTAATCATGAATTTTCAACAATTACAGGAGTACGAGAAGATATTT
TAGAAATTCTACTTAACCTTAAAGAAGTAATATTAAAAAGTTATAGTGAT
AAACCTCAAATAGGCAGAATCAGATTGCAAGGACCTGCTATAATCACTAC
AGGTTTATTTGAAGTACCACCAGACATTGAAATTATTGATCCACAACAAT
ATATAGCTACTATTTGTAATAATACCATCTTTGAAATGGAATTTCGTATT
GAAAAAGGAAGCGGATATAAACTTACAAGAAAAGGTTTCGATAAAAAATC
TATAGATTTTTTACAAATTGATGCAGTATTTATGCCAGTACGCAAATTTA
ATTACATAGTAGAAGAGAAAAAAATCAATTCGACACTGATTCAAGAAAGA
TTGTCTTTAGAAGTTTGGACAAATGGAAGCATATCACCACAAGAAGCAAT
TAGCCAGGGTGCACAAATACTCAATAATTTATTCTCTCCTCTTACTGATC
TAAGTTTTCAACATGTAGAAAATGAAGAAAATAAATATGAAGAAGAAATT
AATCAAATACTAATCGAAGAACTACAATTATCTGTTAGAGCTTACAATTG
TCTTAAGAGAGCTCAAATTCACTCCATATCAAATTTGCTAGATTATTCAC
AGGAAGAACTATTAGAAATTAAAAATTTTGGTCAAAAGTCTGCAGAAGAA
GTAATTGAAGCATTGCAAAATAAACTTGGAATCAGACTACCAAAAGAAAA
AAATACTTCTAATGCTTAA
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