Gvermi3633.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3633.t1
Unique NameGvermi3633.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length173
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:3705992..3706510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog13035.Dacsa_2442
PFAMsDUF3110
Max annot lvl1117|Cyanobacteria
Evalue5.5e-25
EggNOG OGsCOG0457@1|root,COG0457@2|Bacteria,1G70P@1117|Cyanobacteria
DescriptionAlternative locus ID
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3633Gvermi3633Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 3705992..3706510 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3633.t1.start1Gvermi3633.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 3705992..3705994 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3633.t1.CDS1Gvermi3633.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 3705992..3706510 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3633.t1.exon1Gvermi3633.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 3705992..3706510 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3633.t1.stop1Gvermi3633.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 3706508..3706510 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3633.t1Gvermi3633.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 3705992..3706510 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3633.t1 ID=Gvermi3633.t1|Name=Gvermi3633.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=173bp
LRFVRRAHPHADADADADVDDADDADDTEVLQLLSDFESLPRVWVIVFTS
ARDASEGIYSLSVGDENIVLAFQDREEAQRYALCLEQQQFPLPSVSELDT
NELAEFCSESHYRLGFVPKGSLLTPPEQSVVDDIDKWRPNPSSPSSPANG
STGMTQDEIDTIRKRLDSLFGQ*
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spliced messenger RNA

>Gvermi3633.t1 ID=Gvermi3633.t1|Name=Gvermi3633.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=519bp|location=Sequence derived from alignment at ScGOVlb_41:3705992..3706510+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ctgcgcttcgtgcgccgcgcgcacccgcacgccgacgccgacgccgacgc
cgacgtcgatgacgccgacgacgccgacgACACCGAGGTGCTGCAGCTGC
TCAGCGACTTTGAGAGCCTGCCGCGCGTGTGGGTCATCGTCTTCACCAGC
GCGCGCGACGCGTCGGAGGGCATCTACAGCCTCAGCGTAGGCGACGAGAA
CATCGTGCTTGCCTTCCAGGACCGCGAGGAGGCGCAGCGCTACGCCCTTT
GCCTGGAGCAGCAGCAGTTCCCGCTGCCCTCCGTGTCCGAGTTGGACACC
AACGAGCTGGCCGAGTTTTGCTCCGAATCCCACTACAGACTGGGCTTCGT
CCCCAAGGGCAGCTTGCTTACGCCCCCAGAGCAGAGCGTCGTCGACGACA
TAGACAAGTGGAGACCAAATCCGTCGTCCCCATCGTCTCCCGCCAACGGC
TCAACCGGAATGACTCAGGACGAAATTGACACCATCAGGAAGAGGCTAGA
CTCTCTGTTTGGTCAGTAA
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protein sequence of Gvermi3633.t1

>Gvermi3633.t1 ID=Gvermi3633.t1|Name=Gvermi3633.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=173bp
LRFVRRAHPHADADADADVDDADDADDTEVLQLLSDFESLPRVWVIVFTS
ARDASEGIYSLSVGDENIVLAFQDREEAQRYALCLEQQQFPLPSVSELDT
NELAEFCSESHYRLGFVPKGSLLTPPEQSVVDDIDKWRPNPSSPSSPANG
STGMTQDEIDTIRKRLDSLFGQ*
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mRNA from alignment at ScGOVlb_41:3705992..3706510+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3633.t1 ID=Gvermi3633.t1|Name=Gvermi3633.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=519bp|location=Sequence derived from alignment at ScGOVlb_41:3705992..3706510+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ctgcgcttcgtgcgccgcgcgcacccgcacgccgacgccgacgccgacgc
cgacgtcgatgacgccgacgacgccgacgACACCGAGGTGCTGCAGCTGC
TCAGCGACTTTGAGAGCCTGCCGCGCGTGTGGGTCATCGTCTTCACCAGC
GCGCGCGACGCGTCGGAGGGCATCTACAGCCTCAGCGTAGGCGACGAGAA
CATCGTGCTTGCCTTCCAGGACCGCGAGGAGGCGCAGCGCTACGCCCTTT
GCCTGGAGCAGCAGCAGTTCCCGCTGCCCTCCGTGTCCGAGTTGGACACC
AACGAGCTGGCCGAGTTTTGCTCCGAATCCCACTACAGACTGGGCTTCGT
CCCCAAGGGCAGCTTGCTTACGCCCCCAGAGCAGAGCGTCGTCGACGACA
TAGACAAGTGGAGACCAAATCCGTCGTCCCCATCGTCTCCCGCCAACGGC
TCAACCGGAATGACTCAGGACGAAATTGACACCATCAGGAAGAGGCTAGA
CTCTCTGTTTGGTCAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_41:3705992..3706510+

>Gvermi3633.t1 ID=Gvermi3633.t1|Name=Gvermi3633.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=519bp|location=Sequence derived from alignment at ScGOVlb_41:3705992..3706510+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ctgcgcttcgtgcgccgcgcgcacccgcacgccgacgccgacgccgacgc
cgacgtcgatgacgccgacgacgccgacgACACCGAGGTGCTGCAGCTGC
TCAGCGACTTTGAGAGCCTGCCGCGCGTGTGGGTCATCGTCTTCACCAGC
GCGCGCGACGCGTCGGAGGGCATCTACAGCCTCAGCGTAGGCGACGAGAA
CATCGTGCTTGCCTTCCAGGACCGCGAGGAGGCGCAGCGCTACGCCCTTT
GCCTGGAGCAGCAGCAGTTCCCGCTGCCCTCCGTGTCCGAGTTGGACACC
AACGAGCTGGCCGAGTTTTGCTCCGAATCCCACTACAGACTGGGCTTCGT
CCCCAAGGGCAGCTTGCTTACGCCCCCAGAGCAGAGCGTCGTCGACGACA
TAGACAAGTGGAGACCAAATCCGTCGTCCCCATCGTCTCCCGCCAACGGC
TCAACCGGAATGACTCAGGACGAAATTGACACCATCAGGAAGAGGCTAGA
CTCTCTGTTTGGTCAGTAA
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