Gvermi8760.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi8760.t1
Unique NameGvermi8760.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length125
Homology
BLAST of Gvermi8760.t1 vs. uniprot
Match: A0A2V3IMD9_9FLOR (Chromo domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMD9_9FLOR)

HSP 1 Score: 75.5 bits (184), Expect = 3.280e-14
Identity = 44/102 (43.14%), Postives = 59/102 (57.84%), Query Frame = 0
Query:   23 APYTNLQTPPGSTFPELLQARPVSADPTFIRDEEMPSEVFEDEIDAREWVVDRVVDEAVAQDGTPIVKVRWYGFLPSWDSWEPTANIPPNFVVRYWSRRQKS 124
            AP   L     +T    + A PV A P    D   P EV ++E   REWVVD+++ +++A++GTPIV VRWYGF     +WEP ANIP  F+  Y SR  K+
Sbjct:  121 APARELMNTAPTTRKRSVLADPVFAPPP--EDVMHPPEV-DEENSGREWVVDKIIGQSIAENGTPIVLVRWYGFREP--TWEPAANIPYKFIAHYRSRMCKT 217          
BLAST of Gvermi8760.t1 vs. uniprot
Match: A0A2V3IEG3_9FLOR (Chromo domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEG3_9FLOR)

HSP 1 Score: 65.5 bits (158), Expect = 4.050e-10
Identity = 31/67 (46.27%), Postives = 42/67 (62.69%), Query Frame = 0
Query:   55 EEMPSEVFEDEIDA-REWVVDRVVDEAVAQDGTPIVKVRWYGFLPSWDSWEPTANIPPNFVVRYWSR 120
            EE P +V +D     +E  +DRVV+  +  DG    +VRWYG+ PS D+WEP  NIP  FV+R+W R
Sbjct:  206 EEWPVDVPKDAASLPKESAIDRVVNAGIDDDGVVKYRVRWYGYKPSEDTWEPRENIPEKFVLRFWRR 272          
BLAST of Gvermi8760.t1 vs. uniprot
Match: R7Q2U6_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q2U6_CHOCR)

HSP 1 Score: 65.9 bits (159), Expect = 4.370e-10
Identity = 43/113 (38.05%), Postives = 60/113 (53.10%), Query Frame = 0
Query:   17 PDTGSNAPYTNLQTPP--GSTFPELLQA----RPVSADPTFIRDEEMPSEVFEDEIDAR---EWVVDRVVDEAVAQDGTPIVKVRWYGFLPSWDSWEPTANIPPNFVVRYWSR 120
            P   S+   T +  PP  G+T PE        R VS DP    D E+P  V +D  +A    E  +DR+V    A DG+P+ +VRW+G+ P  D+WE   N+P NF+ RY +R
Sbjct:  331 PKAPSSVRSTPMAIPPASGTTPPEKASVSRTTRTVSIDP----DSEVP--VHQDPAEAEADTEHAIDRIVAHGEADDGSPLYRVRWFGYSPKEDTWERADNLPENFIRRYRAR 437          
BLAST of Gvermi8760.t1 vs. uniprot
Match: UPI001E1E06FE (uncharacterized protein LOC123543491 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E06FE)

HSP 1 Score: 58.5 bits (140), Expect = 1.110e-7
Identity = 23/53 (43.40%), Postives = 36/53 (67.92%), Query Frame = 0
Query:   70 EWVVDRVVDEAVAQDGTPIVKVRWYGFLPSWDSWEPTANIPPNFVVRYWSRRQ 122
            E+V+DR++     +DGT  +++RWYGF  S D+WEPT +IP   + RY  +R+
Sbjct:  200 EYVIDRIISHRRDEDGTVRLRIRWYGFDSSNDTWEPTVHIPSELIHRYAKKRK 252          
BLAST of Gvermi8760.t1 vs. uniprot
Match: A0A0K8TNU4_TABBR (Putative abc transporter f family member 4-like isoform x2 (Fragment) n=1 Tax=Tabanus bromius TaxID=304241 RepID=A0A0K8TNU4_TABBR)

HSP 1 Score: 55.1 bits (131), Expect = 2.420e-6
Identity = 21/55 (38.18%), Postives = 37/55 (67.27%), Query Frame = 0
Query:   69 REWVVDRVVDEAVAQDGTPIVKVRWYGFLPSWDSWEPTANIPPNFVVRYWSRRQK 123
            +EW V++VVD    +DGT + ++RW G+ PS D+WEP AN+    ++  + +++K
Sbjct:  242 KEWEVEKVVDVVTEKDGTRVFRIRWKGYRPSSDTWEPEANLNCADLIEKFLKKRK 296          
BLAST of Gvermi8760.t1 vs. uniprot
Match: A0A7S1NR54_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NR54_9EUGL)

HSP 1 Score: 52.8 bits (125), Expect = 9.570e-6
Identity = 21/47 (44.68%), Postives = 29/47 (61.70%), Query Frame = 0
Query:   71 WVVDRVVDEAVAQDGTPIVKVRWYGFLPSWDSWEPTANIPPNFVVRY 117
            W VD++++  V  DG  + KVRW GF PS DSWEP ++  P   V +
Sbjct:  143 WEVDKILEHKVESDGKTLFKVRWKGFGPSHDSWEPPSSFFPGLCVPF 189          
The following BLAST results are available for this feature:
BLAST of Gvermi8760.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3IMD9_9FLOR3.280e-1443.14Chromo domain-containing protein n=1 Tax=Gracilari... [more]
A0A2V3IEG3_9FLOR4.050e-1046.27Chromo domain-containing protein n=1 Tax=Gracilari... [more]
R7Q2U6_CHOCR4.370e-1038.05Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
UPI001E1E06FE1.110e-743.40uncharacterized protein LOC123543491 n=1 Tax=Merce... [more]
A0A0K8TNU4_TABBR2.420e-638.18Putative abc transporter f family member 4-like is... [more]
A0A7S1NR54_9EUGL9.570e-644.68Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000953Chromo/chromo shadow domainSMARTSM00298chromo_7coord: 70..122
e-value: 2.8E-4
score: 30.2
IPR000953Chromo/chromo shadow domainPROSITEPS50013CHROMO_2coord: 71..124
score: 10.059701
NoneNo IPR availableGENE3D2.40.50.40coord: 52..124
e-value: 2.1E-9
score: 39.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..36
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..49
IPR023780Chromo domainPFAMPF00385Chromocoord: 71..120
e-value: 2.2E-6
score: 27.5
IPR016197Chromo-like domain superfamilySUPERFAMILY54160Chromo domain-likecoord: 57..121

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_627contigScGOVlb_627:1503..1877 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8760.t1Gvermi8760.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_627 1503..1877 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi8760.t1 ID=Gvermi8760.t1|Name=Gvermi8760.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=125bp
APREQEPQEETAAPQDPDTGSNAPYTNLQTPPGSTFPELLQARPVSADPT
FIRDEEMPSEVFEDEIDAREWVVDRVVDEAVAQDGTPIVKVRWYGFLPSW
DSWEPTANIPPNFVVRYWSRRQKS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000953Chromo/chromo_shadow_dom
IPR023780Chromo_domain
IPR016197Chromo-like_dom_sf