Gvermi8206.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi8206.t1
Unique NameGvermi8206.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length331
Homology
BLAST of Gvermi8206.t1 vs. uniprot
Match: A0A2V3III4_9FLOR (DUF4203 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3III4_9FLOR)

HSP 1 Score: 422 bits (1084), Expect = 2.400e-145
Identity = 226/333 (67.87%), Postives = 276/333 (82.88%), Query Frame = 0
Query:    1 MAVVDSVSDSADTILSKFNGYAADHQDGIVALLLFVGVIVTFAGRVLLTPTVFLVGFIPSSTAITAFAFAFIKERKPSNPRVLGGVSMVVAAATGTLVGIIMLRLLFRIATFLLCAGFGAVLVLVGHLFLLEPSVGPNALIILYSIVILAALLSGLYSVSYPEPAIILGTSFDGAALAVFSLARFLGHRPKLLAEVPEGSQIPAEWAIGYATATLLLGIFGSMTQWQVAVADRIVAAAAEKAKNSENKEGDTIGYSMQGDQHQLLLP--SEPPRTPTYERESLHSPAGMNTYGSVEPED-QYTVLHNIGAGPLPDNLEMLKNAKDTKLSHTPI 330
            MA+VDS+SDSAD+ILS FN YAA H+DGI+ALLLFVGV+V+F+GRVLLTPTVFL+GFIPSST ITA A A+I+++KP+NPR++G ++M+ A A G LVG+IMLRLLFRIATFLLCAGFGAV+VL+ HLFLLEPSVGPNALIILYSIVILAALL+GL+SVSYP+ AIILGTSFDGAALAVFSLARFLGHRPKLL +VP+G+QIPA WAIGYA+ATLLLGIFG+MTQ QVAVAD I+AAAAEK  ++       +  S+   + Q L+P  +EPP            P G +TYG+V+ +D QY+V+HNIGA PLP +L+++KNAKD K +  P+
Sbjct:    1 MAIVDSLSDSADSILSNFNTYAASHEDGIIALLLFVGVVVSFSGRVLLTPTVFLLGFIPSSTTITALALAYIQDKKPANPRIIGALAMLCAVAVGVLVGVIMLRLLFRIATFLLCAGFGAVIVLIVHLFLLEPSVGPNALIILYSIVILAALLAGLFSVSYPDTAIILGTSFDGAALAVFSLARFLGHRPKLLIQVPQGAQIPALWAIGYASATLLLGIFGAMTQRQVAVADAIIAAAAEKRDSTREHNESELPESLPTTEQQHLIPFHAEPPHXXXXXXXXXXXPIGNSTYGAVDQDDSQYSVVHNIGAEPLPVSLDIIKNAKDAKGAQLPL 333          
BLAST of Gvermi8206.t1 vs. uniprot
Match: R7QEI9_CHOCR (DUF4203 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEI9_CHOCR)

HSP 1 Score: 288 bits (737), Expect = 1.090e-92
Identity = 171/332 (51.51%), Postives = 221/332 (66.57%), Query Frame = 0
Query:    1 MAVVDSVSDSADTILSKFNGYAADHQDGIVALLLFVGVIVTFAGRVLLTPTVFLVGFIPSSTAITAFAFAFIKERKPSNPR--VLGGVSMVVAAATGTLVGIIMLRLLFRIATFLLCAGFGAVLVLVGHLFLLEPSVGPNALIILYSIVILAALLSGLYSVSYPEPAIILGTSFDGAALAVFSLARFLGHRPKLLA-EVPEGSQIPAE---WAIGYATATLLLGIFGSMTQWQVAVADRIVAAAAEKAKNSENKEGD---TIGYSMQGDQ-HQLLLPSEPPRTPTYERESLHSPAGMNTYGSVEPED-QYTVLHNIGAGPLPDNLEMLKNAK 321
            M VVDSVS SA+++ +  N YAA H DG+VAL LF GVIV F+GR +L PTVFL+GF P++  ITA   A I E  P   R  +L  V + +A   G LVG++MLRLLF IATF+LCAGFGAV+V V HLFL+EP+ G N  I+LY I I A+LL GL+SVSYPE  IILGT+FDGAAL+V+SLARFLGHRP + A ++P  +    +   WAIGYA AT++LG+FG M+Q +VA+AD I+    +   N      D    I Y    D+   LL  +EPPRTP Y + S+ SP     YG++E ++ QY+V+ N+GAGPL  + E    AK
Sbjct:    1 MTVVDSVSGSANSLFTAVNAYAASHHDGLVALALFAGVIVAFSGRTILKPTVFLIGFAPTAVIITALGLALIAEEHPGTDRQSLLEAVVVALATLAGILVGVVMLRLLFGIATFMLCAGFGAVMVFVLHLFLMEPATGKNGQIVLYVIAIFASLLVGLFSVSYPETGIILGTAFDGAALSVYSLARFLGHRPNIFAADIPTATDAEPDSPWWAIGYAIATIVLGVFGGMSQRRVALADAIITRQRQIKDNPSEPTYDEEANIPYGSNLDEIDPLLAVAEPPRTPPYMKSSVSSPGSR--YGALEQDNNQYSVVRNLGAGPLGQSEEDFPPAK 330          
The following BLAST results are available for this feature:
BLAST of Gvermi8206.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3III4_9FLOR2.400e-14567.87DUF4203 domain-containing protein n=1 Tax=Gracilar... [more]
R7QEI9_CHOCR1.090e-9251.51DUF4203 domain-containing protein n=1 Tax=Chondrus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025256Domain of unknown function DUF4203PFAMPF13886DUF4203coord: 30..226
e-value: 6.0E-15
score: 55.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 249..263
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 247..293
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 165..186
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 83..103
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 132..137
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 138..159
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..28
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 160..164
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 29..47
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 104..108
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 72..82
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 48..52
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 227..330
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 53..71
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 187..206
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 207..226
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 109..131
NoneNo IPR availableTMHMMTMhelixcoord: 165..187
NoneNo IPR availableTMHMMTMhelixcoord: 202..224
NoneNo IPR availableTMHMMTMhelixcoord: 53..72
NoneNo IPR availableTMHMMTMhelixcoord: 29..48
NoneNo IPR availableTMHMMTMhelixcoord: 141..160
NoneNo IPR availableTMHMMTMhelixcoord: 82..104
NoneNo IPR availableTMHMMTMhelixcoord: 109..131
IPR040236Transmembrane protein 198PANTHERPTHR31247TRANSMEMBRANE PROTEIN 198 FAMILY MEMBERcoord: 23..286

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:1565801..1566793 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8206.t1Gvermi8206.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24226 1565801..1566793 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi8206.t1 ID=Gvermi8206.t1|Name=Gvermi8206.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=331bp
MAVVDSVSDSADTILSKFNGYAADHQDGIVALLLFVGVIVTFAGRVLLTP
TVFLVGFIPSSTAITAFAFAFIKERKPSNPRVLGGVSMVVAAATGTLVGI
IMLRLLFRIATFLLCAGFGAVLVLVGHLFLLEPSVGPNALIILYSIVILA
ALLSGLYSVSYPEPAIILGTSFDGAALAVFSLARFLGHRPKLLAEVPEGS
QIPAEWAIGYATATLLLGIFGSMTQWQVAVADRIVAAAAEKAKNSENKEG
DTIGYSMQGDQHQLLLPSEPPRTPTYERESLHSPAGMNTYGSVEPEDQYT
VLHNIGAGPLPDNLEMLKNAKDTKLSHTPI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025256DUF4203
IPR040236TMEM198