Gvermi8047.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi8047.t1
Unique NameGvermi8047.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length162
Homology
BLAST of Gvermi8047.t1 vs. uniprot
Match: A0A2V3ISS6_9FLOR (Serine hydroxymethyltransferase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISS6_9FLOR)

HSP 1 Score: 164 bits (414), Expect = 3.280e-45
Identity = 79/146 (54.11%), Postives = 101/146 (69.18%), Query Frame = 0
Query:    5 VAMSPEPLTDNLPLSQQAPQIHRLLQQEMSGQWHNLELVTFENFTSSVVLYCMGTIFTKKYSECYPAARFYDVNQVVAQVQHMCRDCALAAFHYDSSPWAVNVQLYSRSVANFTSYTTLFNPQNCILGPELFSGCHLTHMFYTPKR 150
            V   P+ LT N+PL +Q P++H LL+ E S QW  LEL+  ENFTSS VL C+G++FT KYSE YP  R+Y  N+V+ +V+ +CR  ALAAF  +   W VNVQ YS S ANF +YT L NP + I+G +L SG HLTH FYTPK+
Sbjct:   37 VISHPKALTGNIPLREQDPEVHHLLELEKSRQWRGLELIASENFTSSAVLECLGSVFTNKYSEGYPGVRYYGGNEVIDKVESLCRSRALAAFDLNPELWGVNVQPYSGSPANFAAYTALLNPHDRIMGLDLPSGGHLTHGFYTPKK 182          
BLAST of Gvermi8047.t1 vs. uniprot
Match: A0A7S0BKU8_9RHOD (Serine hydroxymethyltransferase n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BKU8_9RHOD)

HSP 1 Score: 150 bits (378), Expect = 5.260e-40
Identity = 73/136 (53.68%), Postives = 93/136 (68.38%), Query Frame = 0
Query:   15 NLPLSQQAPQIHRLLQQEMSGQWHNLELVTFENFTSSVVLYCMGTIFTKKYSECYPAARFYDVNQVVAQVQHMCRDCALAAFHYDSSPWAVNVQLYSRSVANFTSYTTLFNPQNCILGPELFSGCHLTHMFYTPKR 150
            N+PL +  P+++ LLQ+E   QW  LEL+  ENFTS  VL  +G++FT KYSE YP AR+Y  N+VV +V+ +C+  AL AF  D S W VNVQ YS S ANF  YT L NP + I+G +L SG HLTH FYTPK+
Sbjct:   47 NVPLEEADPEVYGLLQEEKRRQWRGLELIASENFTSKAVLDTLGSVFTNKYSEGYPGARYYGGNEVVDKVERLCQQRALEAFDLDPSEWGVNVQPYSGSPANFAVYTALLNPHDRIMGLDLPSGGHLTHGFYTPKK 182          
BLAST of Gvermi8047.t1 vs. uniprot
Match: A0A3B4WY20_SERLL (Glycine hydroxymethyltransferase n=1 Tax=Seriola lalandi dorsalis TaxID=1841481 RepID=A0A3B4WY20_SERLL)

HSP 1 Score: 132 bits (331), Expect = 4.770e-36
Identity = 62/128 (48.44%), Postives = 86/128 (67.19%), Query Frame = 0
Query:   23 PQIHRLLQQEMSGQWHNLELVTFENFTSSVVLYCMGTIFTKKYSECYPAARFYDVNQVVAQVQHMCRDCALAAFHYDSSPWAVNVQLYSRSVANFTSYTTLFNPQNCILGPELFSGCHLTHMFYTPKR 150
            P+++R L +E   Q + +EL+  ENFTS  V+ C+G+  T KYSE  P AR+Y  NQ++ QV+++CR  ALAAF+ D + W VNVQ YS S ANF  YT L  P + ++G +L SG HLTH +YT K+
Sbjct:   14 PEVYRFLLEEKKRQVNGIELIASENFTSKAVMECLGSCMTNKYSEGMPGARYYGGNQIIDQVENLCRSRALAAFNCDPAKWGVNVQPYSGSPANFAVYTALLTPHDRVMGLDLPSGGHLTHGYYTAKK 141          
BLAST of Gvermi8047.t1 vs. uniprot
Match: A0A7S2VJH2_9DINO (Serine hydroxymethyltransferase n=6 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2VJH2_9DINO)

HSP 1 Score: 135 bits (340), Expect = 8.380e-35
Identity = 65/139 (46.76%), Postives = 93/139 (66.91%), Query Frame = 0
Query:   12 LTDNLPLSQQAPQIHRLLQQEMSGQWHNLELVTFENFTSSVVLYCMGTIFTKKYSECYPAARFYDVNQVVAQVQHMCRDCALAAFHYDSSPWAVNVQLYSRSVANFTSYTTLFNPQNCILGPELFSGCHLTHMFYTPKR 150
            L+ N PL++  P++ RL+Q+E + Q  ++EL+  ENFTS  V+ C+G+  T KYSE  P AR+Y  N+V+ Q++++C+  AL AF  D   W VNVQ YS S ANF  YT L  P + ++G +L SG HLTH +YTPK+
Sbjct:    8 LSGNRPLAEADPEMARLVQEERARQIRSVELIASENFTSRAVMECLGSALTNKYSEGQPGARYYGGNEVIDQIENLCKARALQAFGLDEKAWGVNVQPYSGSPANFAVYTALLAPHSRVMGLDLPSGGHLTHGYYTPKK 146          
BLAST of Gvermi8047.t1 vs. uniprot
Match: W7U077_9STRA (Serine hydroxymethyltransferase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U077_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.060e-34
Identity = 68/140 (48.57%), Postives = 91/140 (65.00%), Query Frame = 0
Query:   12 LTDNLPLSQQAPQIHRLLQQEMSGQWHNLELVTFENFTSSVVLYCMGTIFTKKYSECYPAARFYDVNQVVAQVQHMCRDCALAAFHYDSSPWAVNVQLYSRSVANFTSYTTLFNPQNCILGPELFSGCHLTHMFYTPKRA 151
            L  N  L +  P ++ L+QQE + Q  +LEL+  ENFTS+ V+ C+G++ T KY+E  P AR+Y  N+VV QV+++CRD AL A+  D   W VNVQ YS S ANF  YT L  P + I+G +L SG HLTH FYT  +A
Sbjct:   20 LAQNKSLKEHDPVLYDLIQQEKNRQATSLELIASENFTSAAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKA 159          
BLAST of Gvermi8047.t1 vs. uniprot
Match: A0A6A5BUE9_NAEFO (Serine hydroxymethyltransferase n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5BUE9_NAEFO)

HSP 1 Score: 134 bits (338), Expect = 1.850e-34
Identity = 65/139 (46.76%), Postives = 90/139 (64.75%), Query Frame = 0
Query:   12 LTDNLPLSQQAPQIHRLLQQEMSGQWHNLELVTFENFTSSVVLYCMGTIFTKKYSECYPAARFYDVNQVVAQVQHMCRDCALAAFHYDSSPWAVNVQLYSRSVANFTSYTTLFNPQNCILGPELFSGCHLTHMFYTPKR 150
            L  N PLS+  P++  L+++E S QW  LEL+  ENFTS  V+ C+G+  T KYSE    AR+Y  N+V+ +++ +C++ ALAAF   S  W VNVQ YS S ANF  YT L  P + I+G +L SG HLTH +Y+ K+
Sbjct:   12 LVGNTPLSEADPELFELIEKEKSRQWKGLELIASENFTSQAVMECLGSCLTNKYSEGQVGARYYGGNEVIDEIEKLCKERALAAFDLSSEEWGVNVQPYSGSPANFAVYTGLLQPHDRIMGLDLPSGGHLTHGYYSGKK 150          
BLAST of Gvermi8047.t1 vs. uniprot
Match: J3N865_ORYBR (Serine hydroxymethyltransferase n=6 Tax=Oryzeae TaxID=147380 RepID=J3N865_ORYBR)

HSP 1 Score: 134 bits (336), Expect = 4.040e-34
Identity = 65/133 (48.87%), Postives = 88/133 (66.17%), Query Frame = 0
Query:   17 PLSQQAPQIHRLLQQEMSGQWHNLELVTFENFTSSVVLYCMGTIFTKKYSECYPAARFYDVNQVVAQVQHMCRDCALAAFHYDSSPWAVNVQLYSRSVANFTSYTTLFNPQNCILGPELFSGCHLTHMFYTPK 149
            PL+   P +H LL++E   Q   +EL+  ENFTS  V+  +G+  T KYSE  P AR+Y  N V+ +++++CRD ALAAF  D + W VNVQ YS S ANF +YT L NP + I+G +L SG HLTH +YTP+
Sbjct:   11 PLAAADPLVHDLLEREKRRQRSGIELIASENFTSFAVMEALGSALTNKYSEGMPGARYYGGNDVIDEIENLCRDRALAAFRLDPASWGVNVQPYSGSPANFAAYTALLNPHDRIMGLDLPSGGHLTHGYYTPR 143          
BLAST of Gvermi8047.t1 vs. uniprot
Match: A0A137P979_CONC2 (Serine hydroxymethyltransferase n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137P979_CONC2)

HSP 1 Score: 133 bits (334), Expect = 7.630e-34
Identity = 64/136 (47.06%), Postives = 90/136 (66.18%), Query Frame = 0
Query:   15 NLPLSQQAPQIHRLLQQEMSGQWHNLELVTFENFTSSVVLYCMGTIFTKKYSECYPAARFYDVNQVVAQVQHMCRDCALAAFHYDSSPWAVNVQLYSRSVANFTSYTTLFNPQNCILGPELFSGCHLTHMFYTPKR 150
            N  L Q+ P+I  L+++E   QW  LEL+  ENFTS+ V+   G++FT KYSE  P AR+Y  N+VV QV+++CR+ AL AFH +S  W  NVQ YS S ANF ++T +  P + ++G +L SG HLTH + T K+
Sbjct:   14 NTTLEQEDPEIFNLVEKEKYRQWSGLELIASENFTSAAVMEANGSVFTNKYSEGLPGARYYGGNEVVDQVENLCRERALKAFHLESDKWGCNVQPYSGSTANFAAFTGMIQPFDRVMGLDLPSGGHLTHGYQTDKK 149          
BLAST of Gvermi8047.t1 vs. uniprot
Match: R1DPF5_EMIHU (Serine hydroxymethyltransferase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DPF5_EMIHU)

HSP 1 Score: 132 bits (331), Expect = 1.790e-33
Identity = 62/128 (48.44%), Postives = 86/128 (67.19%), Query Frame = 0
Query:   23 PQIHRLLQQEMSGQWHNLELVTFENFTSSVVLYCMGTIFTKKYSECYPAARFYDVNQVVAQVQHMCRDCALAAFHYDSSPWAVNVQLYSRSVANFTSYTTLFNPQNCILGPELFSGCHLTHMFYTPKR 150
            P+++R L +E   Q + +EL+  ENFTS  V+ C+G+  T KYSE  P AR+Y  NQ++ QV+++CR  ALAAF+ D + W VNVQ YS S ANF  YT L  P + ++G +L SG HLTH +YT K+
Sbjct:   14 PEVYRFLLEEKKRQVNGIELIASENFTSKAVMECLGSCMTNKYSEGMPGARYYGGNQIIDQVENLCRSRALAAFNCDPAKWGVNVQPYSGSPANFAVYTALLTPHDRVMGLDLPSGGHLTHGYYTAKK 141          
BLAST of Gvermi8047.t1 vs. uniprot
Match: K7TSD2_MAIZE (Serine hydroxymethyltransferase n=28 Tax=Poaceae TaxID=4479 RepID=K7TSD2_MAIZE)

HSP 1 Score: 132 bits (332), Expect = 2.790e-33
Identity = 67/142 (47.18%), Postives = 91/142 (64.08%), Query Frame = 0
Query:    6 AMSPEPLTDNLPLSQQAPQIHRLLQQEMSGQWHNLELVTFENFTSSVVLYCMGTIFTKKYSECYPAARFYDVNQVVAQVQHMCRDCALAAFHYDSSPWAVNVQLYSRSVANFTSYTTLFNPQNCILGPELFSGCHLTHMFYT 147
            AM P       PL+   P+I+ LL++E   Q   +EL+  ENFTS  V+  +G+  T KYSE  P AR+Y  N V+ +++++CR  ALAAFH D++ W VNVQ YS S ANF +YT L NP + I+G +L SG HLTH +YT
Sbjct:   55 AMDPVATWGLTPLAGADPEIYDLLEREKRRQRRGIELIASENFTSFAVMEALGSALTNKYSEGMPGARYYGGNDVIDEIENLCRSRALAAFHLDAASWGVNVQPYSGSPANFAAYTALLNPHDRIMGLDLPSGGHLTHGYYT 196          
The following BLAST results are available for this feature:
BLAST of Gvermi8047.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ISS6_9FLOR3.280e-4554.11Serine hydroxymethyltransferase n=1 Tax=Gracilario... [more]
A0A7S0BKU8_9RHOD5.260e-4053.68Serine hydroxymethyltransferase n=2 Tax=Rhodosorus... [more]
A0A3B4WY20_SERLL4.770e-3648.44Glycine hydroxymethyltransferase n=1 Tax=Seriola l... [more]
A0A7S2VJH2_9DINO8.380e-3546.76Serine hydroxymethyltransferase n=6 Tax=Brandtodin... [more]
W7U077_9STRA1.060e-3448.57Serine hydroxymethyltransferase n=3 Tax=Monodopsid... [more]
A0A6A5BUE9_NAEFO1.850e-3446.76Serine hydroxymethyltransferase n=2 Tax=Naegleria ... [more]
J3N865_ORYBR4.040e-3448.87Serine hydroxymethyltransferase n=6 Tax=Oryzeae Ta... [more]
A0A137P979_CONC27.630e-3447.06Serine hydroxymethyltransferase n=1 Tax=Conidiobol... [more]
R1DPF5_EMIHU1.790e-3348.44Serine hydroxymethyltransferase n=1 Tax=Emiliania ... [more]
K7TSD2_MAIZE2.790e-3347.18Serine hydroxymethyltransferase n=28 Tax=Poaceae T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039429Serine hydroxymethyltransferase-like domainPFAMPF00464SHMTcoord: 18..149
e-value: 2.4E-34
score: 118.6
IPR015422Pyridoxal phosphate-dependent transferase, small domainGENE3D3.90.1150.10Aspartate Aminotransferase, domain 1coord: 23..46
e-value: 7.2E-38
score: 131.9
IPR015421Pyridoxal phosphate-dependent transferase, major domainGENE3D3.40.640.10coord: 47..150
e-value: 7.2E-38
score: 131.9
IPR001085Serine hydroxymethyltransferasePANTHERPTHR11680SERINE HYDROXYMETHYLTRANSFERASEcoord: 14..150
IPR015424Pyridoxal phosphate-dependent transferaseSUPERFAMILY53383PLP-dependent transferasescoord: 15..149

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:877933..878418 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8047.t1Gvermi8047.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24226 877933..878418 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi8047.t1 ID=Gvermi8047.t1|Name=Gvermi8047.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=162bp
MQSRVAMSPEPLTDNLPLSQQAPQIHRLLQQEMSGQWHNLELVTFENFTS
SVVLYCMGTIFTKKYSECYPAARFYDVNQVVAQVQHMCRDCALAAFHYDS
SPWAVNVQLYSRSVANFTSYTTLFNPQNCILGPELFSGCHLTHMFYTPKR
ACLPPAFNLRV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039429SHMT-like_dom
IPR015422PyrdxlP-dep_Trfase_small
IPR015421PyrdxlP-dep_Trfase_major
IPR001085Ser_HO-MeTrfase
IPR015424PyrdxlP-dep_Trfase