Gvermi8040.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi8040.t1
Unique NameGvermi8040.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length1080
Homology
BLAST of Gvermi8040.t1 vs. uniprot
Match: A0A2V3IHK8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHK8_9FLOR)

HSP 1 Score: 1242 bits (3213), Expect = 0.000e+0
Identity = 686/1080 (63.52%), Postives = 843/1080 (78.06%), Query Frame = 0
Query:    1 MPLSAEMALRVRHALRVACGGVLIALFALATSIIPGCLTSLIFFISVIAGTPENLQGFQLRCISLTYLGALLGISAYAVVHLIASTSSVATFFLCIPFIVFFAALRADARLTPLPPVANVLLGFLTISRFPTSISALKDVLPNSLIDVTMGWLLANLVNLFFVDRASDAGRTIVADELRNLGAHISRIASKTFSS-QSPLQHDSVSNTNSHHLSLIIDPKPHQTTAANHQTHYLFETQYATHPTQSNNQIDRTEDMTAAAHASLNFFQQLTPLGRTRVQNFSNLAAAARYFDASSFEPCLITRPVSRWRNAAAWKQLVEDLQVLTAKVASLESVACGTHGRRRFSSVQIASLFGEAYFPLWVSHYAACSASCAVMSAAMCNATCKEMFCLDENNPGGHLLHQDIDPRKWKTRRAEMYSGFMSKYRLRIRMFSSGCFPSHSTVADFRSMHLNSTTRKSISKENVESSKKTVQKHGRSPSEIATREINSSFDSDDDGTSSFQHQTEGDSMELSLADMQALSFFGITSHAMSEEIAHVQEAMVTLASTTNARGVFAPFRFLISSFPVLFERIKKLFKKDVCAWEVRFIFTHSVLLIVILALALFLPIRRTFEASEIAWVFSSAALAAQLSAEPTLFIGSIRVVASIAGGLQAFGFNSFLDAIGRKERFGLNYLIIPYVFVAILVWLLVLPPKFRYAAFLNIVTNFVLLFCPRATDECNQALTQPTTECFPDWQYAVSRAVNVSIGVVFALAFHLLFWPRYANQVALRTLSQAFINSVRLMGKLRRTYFSVGQETADSR-RDMRERRPTVATDFGRQLMDAGDIYRKEEKIMKEIQQRLSDLVSQAALTVKSEAGVWEKGPLRLSPLLPLLLDDFIALDVSLKEMASLLGRSPIFSESYGTSVYRHFIRPLLPIYETIHISLNNLGGLAERGLSETKAEETHLREFAFDLQQGITHLARIRSKLRSRAAHRLQCFERNMNQVLSLSTERTQSAEERGRRYSWGATPGASQSDVKTQRHRVSTDGNGIKMDNLQEGLCVDDLVLYNAYSFIADGCLSVFVRIAATILSDTESKLKIVRAEKRKKA 1078
            MPLS    LR+RHALR A GG +IAL +LAT+I  GCL S++FFISVIA TPENLQGFQLR  SLT+LGA+LGI+AY++VHLIASTS++ TFF  IPFIVFF+ALR +  LTPLPPVANVLLG LTIS+FP+SISALK V+P +LIDVT  +++AN+VNL F DRASDAGR IVA ELRNLGAHISRIA++TFS  Q   QH+S  +T S HL+L +D     T ++ H+ HYLF T++A+H   S++ ++RTE M A AHASL++ +QL PL RTRV+NFSNLA AAR+F AS+FEPCLI   +SRWRNA+ WK+LV DLQVL +KVASLESVA  T  R RF + Q+  LFGEA+FPLWV+HYAACSA+CA MS AM +ATC++MF LD+    G LLH +IDPRKWK RRAEMYSGF+ +YR R+   ++    SH++VADFR++   ST   S  + +      T Q++ R  S    ++I SS DS+ D   + Q +    S +LS+A  QALSFFGITSHA+SEEI HVQ +MV LAS+T+ARG+FAPF F++SS P+L +R+K L + DV AWEVRF+FTHS LL+VILALALFLP+R TFEASEIAWVF+SAALAAQLSAEPTLFIG+IRVVA++ GG+ AFGFNS LDA+GRKE   LNY+I+PYVFV  +V L+VLP KFRYA+FLNIVTN VLLFCPRAT+ECNQ L Q TT+CFPDWQYA+SRA NVSIGVVFAL FHLLFWPR+ANQVALRTLS+AF+NSVRL+GKLRRTYFS G +TA  R R    RRP VA+   R +++ GD+YR++E +MKEIQ RLSD +S AALTVK EAGVW+ GPLRLSPLLP LL+DFIAL+VSLKEMASLLGR PIFS SYG SVYRHFIRPLLPIYETI +S +NL GL ERG+ E KA E +L+E  FDL Q ITHLAR+RS+LRSRAA RL+ FE +M++ + LS E++   E   RR+SW  +    +  + T   R+STDGN I   ++ + LC+DD+VLY+A+ FIAD CLS FVRIAA +L D+E+K++ +R + RK A
Sbjct:    1 MPLSDTTLLRLRHALRAASGGSIIALLSLATNISAGCLPSVVFFISVIAATPENLQGFQLRSASLTFLGAVLGITAYSLVHLIASTSAIGTFFAAIPFIVFFSALRPNPHLTPLPPVANVLLGLLTISQFPSSISALKQVVPAALIDVTFAYIVANVVNLAFADRASDAGRRIVARELRNLGAHISRIATQTFSQPQQHPQHNSFHST-SDHLTLFMDRGHRDTLSSLHEQHYLFRTKHASHA--SHHHLERTELMQAEAHASLHYLKQLPPLSRTRVENFSNLAIAARFFSASTFEPCLIRPTISRWRNASTWKKLVNDLQVLMSKVASLESVAMQTESRPRFYAEQLCELFGEAFFPLWVAHYAACSAACASMSTAMYHATCRDMFHLDDTVHDGFLLHPNIDPRKWKNRRAEMYSGFLMRYRHRMTAVAAREIHSHASVADFRNVEGRSTWSTSGRQHHGG----TTQQYARQ-SRSVEKDITSS-DSEYDSLFTTQQKRPSGS-KLSMAQRQALSFFGITSHALSEEIGHVQLSMVELASSTDARGLFAPFYFVVSSIPLLVKRVKDLVRGDVQAWEVRFVFTHSTLLLVILALALFLPLRDTFEASEIAWVFTSAALAAQLSAEPTLFIGAIRVVATVTGGVLAFGFNSLLDALGRKEHDELNYIIVPYVFVTTVVSLMVLPTKFRYASFLNIVTNTVLLFCPRATEECNQVLGQQTTQCFPDWQYAISRAANVSIGVVFALVFHLLFWPRFANQVALRTLSEAFVNSVRLLGKLRRTYFSYGLQTARLRLRKGSIRRPVVASSVKRVILNEGDLYRRDESVMKEIQCRLSDRISFAALTVKLEAGVWKTGPLRLSPLLPRLLNDFIALEVSLKEMASLLGRCPIFSGSYGPSVYRHFIRPLLPIYETIQVSCSNLAGLVERGMVERKASERYLKELVFDLHQAITHLARVRSQLRSRAARRLERFEFSMSESMRLSAEQSFFLESEERRFSWSESLIEPERRLVTSPERISTDGNRILGRHVPKELCIDDIVLYSAFCFIADVCLSAFVRIAAELLVDSETKIEELRGKTRKNA 1070          
BLAST of Gvermi8040.t1 vs. uniprot
Match: R7QMX1_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMX1_CHOCR)

HSP 1 Score: 523 bits (1347), Expect = 5.870e-170
Identity = 295/575 (51.30%), Postives = 391/575 (68.00%), Query Frame = 0
Query:  510 SLADMQALSFFGITSHAMSEEIAHVQEAMVTLASTTNARGVFAPFRFLISSFPVLFERIKKLFKKDVCAWEVRFIFTHSVLLIVILALALFLPIRRTFEASEIAWVFSSAALAAQLSAEPTLFIGSIRVVASIAGGLQAFGFNSFLDAIGRKERFGLNYLIIPYVFVAILVWLLVLPPKFRYAAFLNIVTNFVLLFCPRATDECNQALTQPTTECFPDWQYAVSRAVNVSIGVVFALAFHLLFWPRYANQVALRTLSQAFINSVRLMGKLRRTYFSVGQETADSRRDMRERRPTVATDFGRQLMDAGDIYRKEEKIMKEIQQRLSDLVSQAALTVKSEAGVWEKGPLRLSPLLPLLLDDFIALDVSLKEMASLLGRSPIFSESYGTSVYRHFIRPLLPIYETIHISLNNLGGLAERGLSETKAEETHLREFAFDLQQGITHLARIRSKLRSRAAHRLQCFERNMNQVLSLSTERTQSAEERGRRYSWGATPGASQS--------DVKTQRHRVSTDGN-GIKMDNLQEGLCVDDLVLYNAYSFIADGCLSVFVRIAATILSDTESKLKIVRAEKR 1075
            S  ++QALS+F +TSHA+SEEI+HVQ+AMV LA+T++ARG+ APF F++S  P L+ RIK L K +V  WE++F  THS+LL  ILAL+LFLPI R  E SEIAWV++SAALAAQLSAEPTLFIG+IRV+A+I G    FGF S LDA+GR +   + YL IPY+F+  +V LL++PP +RYAAFL I TN +++FCPR+T EC + L + +  CFPDW+YA+SR+ NV++GVVFA+ FHL+FWPRYANQVALR LS AF++S RL GKL RTYFS G  +     D+    P+ +   G  L++  D+Y+K++ ++ EI  ++   ++ A L VKSEA VW+ GP RL PL+P +L DF+AL VSL EMASLLGR PI+S SYG SV+ HFI P+L +YETI ISLNNL G+ +R ++  K +ET  RE +FDL   ITHLARIR KLR  AA R   FE      + L+  +       G            Q         D    R R   + N   K D  ++ LCVDD+VLY+A++FI D CLS FVRIA  +L D+E+ LK ++  ++
Sbjct:   57 SKVEVQALSYFALTSHALSEEISHVQQAMVELAATSDARGLLAPFYFVVSGLPPLWRRIKALAKGNVRGWEIKFACTHSMLLTSILALSLFLPISRI-EESEIAWVYTSAALAAQLSAEPTLFIGTIRVLATITGAGIGFGFTSILDAMGRSDHSAIQYLAIPYMFIMTIVCLLLVPPAYRYAAFLVIATNAIIIFCPRSTPECTRVLEKQSESCFPDWKYALSRSTNVALGVVFAMFFHLIFWPRYANQVALRYLSAAFLSSSRLFGKLHRTYFSYGLPSGSGSPDLE---PSTSYARGDLLLNE-DVYQKDQSVLDEIISKVGCPLADAMLLVKSEADVWQAGPFRLDPLIPRVLSDFVALSVSLVEMASLLGRRPIYSSSYGRSVFEHFIHPMLGVYETIQISLNNLVGITDRTVAGNKEQET--RENSFDLHHAITHLARIRGKLRRDAAKR--SFEFQKFSAIQLTRRKPCRFSRHGNAADDSYVDLVFQDLGLAKQTRDASYPRARSHNETNRACKTD--EQRLCVDDVVLYDAFTFITDTCLSAFVRIAVAVLIDSEANLKRMKERRQ 620          
BLAST of Gvermi8040.t1 vs. uniprot
Match: A0A1X6NNB3_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NNB3_PORUM)

HSP 1 Score: 122 bits (306), Expect = 1.140e-24
Identity = 125/436 (28.67%), Postives = 199/436 (45.64%), Query Frame = 0
Query:  514 MQALSFFGITSHAMSEEIAHVQEAMVTLA----STTNARGVFAPFRFLISSFPVLFERIK-KLFKKDVCAW--EVRFIFTHSVLLIVILALA-LFLPIRRTFEASEIAWVFSSAALAAQLSAEPTLFIGSIRVVASIAGGLQAFGFNSFLDAI-GRKERFGLN-YLIIPYVFVAILVWLLVLPPKFRYAAFLNIVTNFVLLFCPRATDECNQALTQPT---------TECFPDWQYAVSRAVNVSIGVVFALAFHLLFWPRYANQVALRTLSQAFINSVRLMGKLRRTYFSVGQETA----------DSRRDMRERRPTVATDFGRQL-------------MDAGDIYRKEEKIMKEIQQRLSDLVSQAALTVKSEAGVWEKGPLRLSPLL--PLLLDDFIALDVSLKEMASLLGRSPIFSESYGTSVYRHFIRPL 905
            M+A+ +  + SH+++  + +V  A  T+A        A G+ A      ++FP    R   + +     +W  +  F F +  LL  +L  A L  P +     SE AW++ SAALAAQ S E T+FIG +RVVAS  G   A+ F+     + G   + G++   ++ Y+       L  +P +FR+AAFL +V+N ++   PR+T  C  A                C P   YAVSRAV+V++G + A+A H L  PR+A   A  +L+ A   +V +  KL ++Y    +  A          DS   +     T + D  R L             +DA D Y     +   +   +   + +A   +  E G W+ GP    P+     L+  F AL  ++ E+A +L R P+ + +Y  S +R FI PL
Sbjct:    1 MRAVLYAAVASHSVAHALGNVAAAADTVAVGKAGPPTAAGLTAA-----ATFPARATRSTVRRWAAGGLSWAGQGAFAFQNFALLYTLLVAAVLAAPSQTGGPPSETAWIYCSAALAAQASVEATVFIGGLRVVASAVGSATAYLFHLLTGPLFGPDGQHGVHDAALVAYMAAFAFATLAGMPSRFRHAAFLTVVSNSIVALGPRSTGACAAARDAAAGAGKAAGMAVACAPSAGYAVSRAVHVALGALAAMASHTLLLPRFAGVDARLSLADAAAGAVGMYAKLYQSYLDFDENDAXXXXXXXXXXDSPPGLHR---TTSVDSLRSLAPPSASKGVVAVDIDAADTYAWNS-LAPGVAAAVEGHLLRATTMLNKETGGWQGGPFA-RPMAHNAALVPHFRALMHAVGELAVVLERRPVLTGAYTRSAHRLFIEPL 426          
The following BLAST results are available for this feature:
BLAST of Gvermi8040.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IHK8_9FLOR0.000e+063.52Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QMX1_CHOCR5.870e-17051.30Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6NNB3_PORUM1.140e-2428.67Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 819..839
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 459..478
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 479..499
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 455..499
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 106..116
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 164..578
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 138..142
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 602..630
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 691..710
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 686..690
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 711..730
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..50
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 655..665
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 117..137
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 51..61
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 143..163
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 631..654
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 89..105
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 62..83
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 666..685
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 731..753
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 84..88
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 754..1079
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 579..601
NoneNo IPR availableTMHMMTMhelixcoord: 581..603
NoneNo IPR availableTMHMMTMhelixcoord: 664..686
NoneNo IPR availableTMHMMTMhelixcoord: 731..753
NoneNo IPR availableTMHMMTMhelixcoord: 58..80
NoneNo IPR availableTMHMMTMhelixcoord: 82..104
NoneNo IPR availableTMHMMTMhelixcoord: 21..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:784477..787716 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8040.t1Gvermi8040.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24226 784477..787716 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi8040.t1 ID=Gvermi8040.t1|Name=Gvermi8040.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=1080bp
MPLSAEMALRVRHALRVACGGVLIALFALATSIIPGCLTSLIFFISVIAG
TPENLQGFQLRCISLTYLGALLGISAYAVVHLIASTSSVATFFLCIPFIV
FFAALRADARLTPLPPVANVLLGFLTISRFPTSISALKDVLPNSLIDVTM
GWLLANLVNLFFVDRASDAGRTIVADELRNLGAHISRIASKTFSSQSPLQ
HDSVSNTNSHHLSLIIDPKPHQTTAANHQTHYLFETQYATHPTQSNNQID
RTEDMTAAAHASLNFFQQLTPLGRTRVQNFSNLAAAARYFDASSFEPCLI
TRPVSRWRNAAAWKQLVEDLQVLTAKVASLESVACGTHGRRRFSSVQIAS
LFGEAYFPLWVSHYAACSASCAVMSAAMCNATCKEMFCLDENNPGGHLLH
QDIDPRKWKTRRAEMYSGFMSKYRLRIRMFSSGCFPSHSTVADFRSMHLN
STTRKSISKENVESSKKTVQKHGRSPSEIATREINSSFDSDDDGTSSFQH
QTEGDSMELSLADMQALSFFGITSHAMSEEIAHVQEAMVTLASTTNARGV
FAPFRFLISSFPVLFERIKKLFKKDVCAWEVRFIFTHSVLLIVILALALF
LPIRRTFEASEIAWVFSSAALAAQLSAEPTLFIGSIRVVASIAGGLQAFG
FNSFLDAIGRKERFGLNYLIIPYVFVAILVWLLVLPPKFRYAAFLNIVTN
FVLLFCPRATDECNQALTQPTTECFPDWQYAVSRAVNVSIGVVFALAFHL
LFWPRYANQVALRTLSQAFINSVRLMGKLRRTYFSVGQETADSRRDMRER
RPTVATDFGRQLMDAGDIYRKEEKIMKEIQQRLSDLVSQAALTVKSEAGV
WEKGPLRLSPLLPLLLDDFIALDVSLKEMASLLGRSPIFSESYGTSVYRH
FIRPLLPIYETIHISLNNLGGLAERGLSETKAEETHLREFAFDLQQGITH
LARIRSKLRSRAAHRLQCFERNMNQVLSLSTERTQSAEERGRRYSWGATP
GASQSDVKTQRHRVSTDGNGIKMDNLQEGLCVDDLVLYNAYSFIADGCLS
VFVRIAATILSDTESKLKIVRAEKRKKAD*
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