Gvermi8031.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi8031.t1
Unique NameGvermi8031.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length209
Homology
BLAST of Gvermi8031.t1 vs. uniprot
Match: A0A2V3J6R2_9FLOR (Thylakoid lumenal 15 kDa protein 1, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6R2_9FLOR)

HSP 1 Score: 168 bits (425), Expect = 1.590e-49
Identity = 108/163 (66.26%), Postives = 118/163 (72.39%), Query Frame = 0
Query:   46 RIATVITALAASASLTLAPSQAVSGGGKDFASQNWTGQTFHGSYSGKDFSGXXXXXXXXXXXDLTNTRFFKAELREANMXXXXXSYSSIEAAILRDTNLXXXXXXXXXXXXXXXDVASIENADFTDALISPESAIVKLCEREDAKGVNSITGASTRESLMCPE 208
            RIA  I ALA + SLTL+P+ AVSGGGKD+ASQNWTGQTFHGSYSGKD   XXXXXXXXXXX   NTRFFKAELREANM     SYSSIEAAILRDT+             XXX             LISPESA+VKLC+R+DAKG+NS TG STRESLMCP+
Sbjct:   18 RIAATIAALATATSLTLSPAHAVSGGGKDYASQNWTGQTFHGSYSGKDXXXXXXXXXXXXXXXXXNTRFFKAELREANMNAVNLSYSSIEAAILRDTDFTDAIMVGSYISDXXXXXXXXXXXXXXXXLISPESAVVKLCQRDDAKGLNSTTGVSTRESLMCPD 180          
BLAST of Gvermi8031.t1 vs. uniprot
Match: A0A7S2I9G5_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I9G5_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.430e-17
Identity = 66/146 (45.21%), Postives = 79/146 (54.11%), Query Frame = 0
Query:   65 SQAVSGGGKDFASQNWTGQTFHGS---YSGKDFSGXXXXXXXXXXXDLTNTRFFKAELREANMXXXXXSYSSIEAAILRDTNLXXXXXXXXXXXXXXXDVASIENADFTDALISPESAIVKLCEREDAKGVNSITGASTRESLMCP 207
            + AVSGGGKDFA+ + TGQ F  +   Y GKDFS            +L   RF+KA L  A+   XXX               XXXXX          DV +IENADFTDA I P   + ++CEREDAKG N  +GA TR+SLMCP
Sbjct:   89 ANAVSGGGKDFANLDITGQDFANNSKDYKGKDFSQVIAKGTQFMNSNLQGCRFYKAYLVNADFSGXXXXXXXXXXXXXXXXXXXXXXXAGAYFSQSLLDVKTIENADFTDAQI-PIKILPQICEREDAKGTNPSSGADTRDSLMCP 233          
BLAST of Gvermi8031.t1 vs. uniprot
Match: A0A6U6FCS6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6FCS6_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.770e-14
Identity = 56/156 (35.90%), Postives = 77/156 (49.36%), Query Frame = 0
Query:   53 ALAASASLTLAPSQAVSGGGKDFASQNWTGQTF-HGSYSGKDFSGXXXXXXXXXXXDLTNTRFFKAELREANMXXXXXSYSSIEAAILRDTNLXXXXXXXXXXXXXXXDVASIENADFTDALISPESAIVKLCEREDAKGVNSITGASTRESLMCP 207
            AL A+ +L+ AP+ AVSGGG D+A  + +     +G+Y GKDF+            +L   RF+KA L   +    XX               X              DV S+ENADF+DA I P   +  +C+R+D KG N +TG  TR+SLMCP
Sbjct:   68 ALLAATALSAAPAVAVSGGGLDYAGLDISXXXXXNGNYKGKDFTQVLAKATSFAKSNLQGCRFYKAYLVNVDFTGSXXXXXXXXXXXXXXXXXXDAQLQGVYFGQSLIDVQSMENADFSDASI-PTKTLPLVCDRDDVKGTNPVTGVDTRDSLMCP 222          
BLAST of Gvermi8031.t1 vs. uniprot
Match: A0A7S0AXB9_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AXB9_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 4.830e-9
Identity = 61/147 (41.50%), Postives = 72/147 (48.98%), Query Frame = 0
Query:   64 PSQAVSGGGKDFASQNWTGQTFHG---SYSGKDFSGXXXXXXXXXXXDLTNTRFFKAELREANMXXXXXSYSSIEAAILRDTNLXXXXXXXXXXXXXXXDVASIENADFTDALISPESAIVKLCEREDAKGVNSITGASTRESLMCP 207
            P+ AVSGGG D+A+ + TGQ F     +Y GKDFS     XXXXXXX                 XXXXX               XX             DV ++EN DF+DA I P   +  +CERED KG N +TG  TRESLMCP
Sbjct:   83 PAGAVSGGGLDYANLDITGQDFSNEAKTYKGKDFSQVIAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAVGSYFGQSLLDVKTMENGDFSDAQI-PVKTLPLVCEREDVKGTNPVTGVDTRESLMCP 228          
The following BLAST results are available for this feature:
BLAST of Gvermi8031.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3J6R2_9FLOR1.590e-4966.26Thylakoid lumenal 15 kDa protein 1, chloroplastic ... [more]
A0A7S2I9G5_9STRA1.430e-1745.21Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A6U6FCS6_9STRA1.770e-1435.90Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S0AXB9_9STRA4.830e-941.50Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.160.20.80coord: 65..208
e-value: 1.2E-23
score: 84.8
NoneNo IPR availablePANTHERPTHR47121THYLAKOID LUMENAL PROTEIN TL20.3, CHLOROPLASTICcoord: 90..208
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..208
NoneNo IPR availableSUPERFAMILY141571Pentapeptide repeat-likecoord: 74..173
IPR001646Pentapeptide repeatPFAMPF00805Pentapeptidecoord: 99..130
e-value: 6.4E-9
score: 35.3
coord: 137..172
e-value: 0.0049
score: 16.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:761592..762218 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8031.t1Gvermi8031.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24226 761592..762218 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi8031.t1 ID=Gvermi8031.t1|Name=Gvermi8031.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=209bp
MMMFITSVSLQASAWLNRSTLKGATACKRSNTATMSATKSNDIPRRIATV
ITALAASASLTLAPSQAVSGGGKDFASQNWTGQTFHGSYSGKDFSGGLFR
GCDFAGSDLTNTRFFKAELREANMTGANLSYSSIEAAILRDTNLQDAVMV
GSYISDSILDVASIENADFTDALISPESAIVKLCEREDAKGVNSITGAST
RESLMCPE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR0016465peptide_repeat