Gvermi7987.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi7987.t1
Unique NameGvermi7987.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length641
Homology
BLAST of Gvermi7987.t1 vs. uniprot
Match: A0A2V3IR46_9FLOR (Myb-like domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IR46_9FLOR)

HSP 1 Score: 311 bits (797), Expect = 4.110e-91
Identity = 282/677 (41.65%), Postives = 357/677 (52.73%), Query Frame = 0
Query:    1 LSDTLIAIPIEKSSQIVSIRRSRGI--IGCEAENSDPVEAQHSAPAFTKYESKRPRKRTAAS-LQLSETPPPRRATAPSKRGGLRSETFAQRSECGRSS---------TKNCNSSARNVSFNSRTKRNAAVSALLNIDSASKTKRLSEVKAGNRRSSNQEGALEAGLKLPTAATYDSTEQTSTIAQRTRRSTRLRDLRSVQHSKQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEREESAHD-QKPSRQPLAKRKRGRLSRSEKIPAVSSPKSRSGTDQEAKEYRSRTRRSTRLKVLAAADVQIESTKIKKHDIV----------------DKSRKKDLNYGNNISSKPAGRRECEEDSRTESKPIRTPTVRFAGTDAPVLRPRKRVSFDPQTL-----TDNTSSVLGVILTETWSAKQREDFERQRNRVPANDPRYWELIAVGVEGKSAAQCLELWESSWSSPPGMKSKKV-GFTDS-GNEPLKKKAKISTPQVIRNVQKASKSKRGRNTAKYRASVRRLADTFARETEDDALEPEIVTPKMSCKLTSTRFDMPGLHDGTPGTEVRQKRRNADKGGELATPEILKRGKSFGLKEADQYVSLFRQRLGTGAIVPNSKQVKPSVQRNSAKGAPRSIAQA-CKAEDYGDGTSLSDADGSQDSDSSCDADLFF 640
            LSDT IA+PIE S+QI+ +RRS+ +  I   + + D   +  +  A T    +R +  TAA+  ++ +    RRA +    G  R ++ +     G             K     A +    SR  R        +     KT+   +V  G+ R+  Q  A     K     + +        + R RR TR          K  XXXXXXXXXXXXXXXXXXXXXXX            +R   A D Q+P  Q  A RKR R          SS  ++S    + +E  +  RRS+RL+   A +   ++  ++K D                  D+ R +   + ++  SK A      E  R  S P+    VR  GT     R RK+VSF  Q       TD+ S        E W+ +QREDFE QRNRVPAN PRYWE IA GVEGKS  QCL+LW+S+W SP   K K+V  FT    +EP +KK K+STPQ +RNVQK SK+KRGRNTAKYR +VRRLADT AR+T+DDALEPEI TP  S K+T   F +P L DGTPGTEVRQKRRNA++GGE ATPEILKRGKSFGL+EADQYVSLFRQRLG   IV  SK+ KP V R+    AP +I      +ED      LS+   S DS  S D DLFF
Sbjct:  282 LSDTRIAVPIEHSAQILRVRRSKRLPYIANGSSDKDKENSHPNVKAATDQSVRRRKGATAATNSKVDKADGVRRARSELGVGVQRKKSLSASGSGGEQRRFVPQPLGPNKPAVHKAESTPRRSRRIREMTSKTAQSHPENKKTESPKQVSVGSERTKAQTKAKRVEAKAEIVPSKEHVRSNDEQSSRQRRRTR---------GKDGXXXXXXXXXXXXXXXXXXXXXXXSVGSDESKSSVQKRTARAKDIQRPKEQNSAPRKRLR----------SSSPTQSAVKADLREKPTELRRSSRLRAQPARNTAEDTNDVQKEDSPQRAANSTALKLATTSWDRRRPEQSQHRSHTISKKA-----PESERGGSIPVADAQVR--GT-----RLRKKVSFGKQVERPARGTDDLSEC-----KEEWTQEQREDFETQRNRVPANAPRYWESIAAGVEGKSVEQCLQLWKSTWGSPVAPKIKRVVSFTPGIADEPAEKKPKLSTPQAVRNVQKGSKTKRGRNTAKYRIAVRRLADTVARDTKDDALEPEIRTPVGSGKMTGGLFGLPDLQDGTPGTEVRQKRRNAEQGGERATPEILKRGKSFGLREADQYVSLFRQRLGNAPIVATSKKEKPGVDRHIGMKAPLNITPLHMVSEDL----LLSNTQDSDDSAVSDDGDLFF 918          
BLAST of Gvermi7987.t1 vs. uniprot
Match: R7QEX0_CHOCR (Myb-like domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEX0_CHOCR)

HSP 1 Score: 153 bits (387), Expect = 1.780e-36
Identity = 92/211 (43.60%), Postives = 117/211 (55.45%), Query Frame = 0
Query:  388 WSAKQREDFERQRNRVPANDPRYWELIAVGVEGKSAAQCLELWESSWSSPP--GMKSKKVGFTDSGNEPLKKKAKISTPQVIRNVQKASKSKRGRNTAKYRASVRRLADTFARETEDDALEP----------EIVTPKM-----SCKLTSTRFDMPGLHDGTPGTEVRQKRRNADKGGELATPEILKRGKSFGLKEADQYVSLFRQRLGTG 581
            WSA QRE+F+RQRN V A+   YWE+IA GV GK+  +C  LWESSW+SP   G K + VG +    E            ++  +Q A+KSKRGRNTAK+R   R LA+  +  T D  LEP           +VTP++     +CK             GTPGTEVRQ R   ++     TPEIL RG+  G  EADQYVSLF++R G G
Sbjct:  279 WSAAQREEFDRQRNSVAADASNYWEVIASGVRGKTGEECRLLWESSWASPQASGRKREAVGLSKRPEE------------MMLEMQNAAKSKRGRNTAKFRRQARELAELVSAGTLDTVLEPCVPGAAAARDVVVTPRLQGIGVACK-------------GTPGTEVRQLRERNERAATATTPEILSRGRKIGFAEADQYVSLFKRRAGKG 464          
The following BLAST results are available for this feature:
BLAST of Gvermi7987.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IR46_9FLOR4.110e-9141.65Myb-like domain-containing protein n=1 Tax=Gracila... [more]
R7QEX0_CHOCR1.780e-3643.60Myb-like domain-containing protein n=1 Tax=Chondru... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.10.60coord: 385..445
e-value: 2.8E-6
score: 29.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 328..343
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 177..208
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 161..176
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 318..344
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 225..244
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 134..283
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 591..629

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:488169..490091 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7987.t1Gvermi7987.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24226 488169..490091 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi7987.t1 ID=Gvermi7987.t1|Name=Gvermi7987.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=641bp
LSDTLIAIPIEKSSQIVSIRRSRGIIGCEAENSDPVEAQHSAPAFTKYES
KRPRKRTAASLQLSETPPPRRATAPSKRGGLRSETFAQRSECGRSSTKNC
NSSARNVSFNSRTKRNAAVSALLNIDSASKTKRLSEVKAGNRRSSNQEGA
LEAGLKLPTAATYDSTEQTSTIAQRTRRSTRLRDLRSVQHSKQTHEKATK
EDAHQYNALEVASKRASKSRKSSNQNQLSEREESAHDQKPSRQPLAKRKR
GRLSRSEKIPAVSSPKSRSGTDQEAKEYRSRTRRSTRLKVLAAADVQIES
TKIKKHDIVDKSRKKDLNYGNNISSKPAGRRECEEDSRTESKPIRTPTVR
FAGTDAPVLRPRKRVSFDPQTLTDNTSSVLGVILTETWSAKQREDFERQR
NRVPANDPRYWELIAVGVEGKSAAQCLELWESSWSSPPGMKSKKVGFTDS
GNEPLKKKAKISTPQVIRNVQKASKSKRGRNTAKYRASVRRLADTFARET
EDDALEPEIVTPKMSCKLTSTRFDMPGLHDGTPGTEVRQKRRNADKGGEL
ATPEILKRGKSFGLKEADQYVSLFRQRLGTGAIVPNSKQVKPSVQRNSAK
GAPRSIAQACKAEDYGDGTSLSDADGSQDSDSSCDADLFF*
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