Gvermi7936.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi7936.t1
Unique NameGvermi7936.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length214
Homology
BLAST of Gvermi7936.t1 vs. uniprot
Match: A0A2V3IRB1_9FLOR (Protein THYLAKOID FORMATION 1, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRB1_9FLOR)

HSP 1 Score: 290 bits (741), Expect = 4.560e-95
Identity = 149/191 (78.01%), Postives = 169/191 (88.48%), Query Frame = 0
Query:    1 MWRFDAVFAFGFDSIFSTFLRYYPSEQERDLLYAACASSLNLDIDLIKTSAASVRDWLEGKTEDDIFAALNTASPSASADAVGPVIEALAYIRHSADFDWYYSRLFGIGLIQVMDAVGAQLSAANAEKWADKIGLVQSKFTSEMGAYLSNMERLKQAEQIFAEATAREAKKTAERLAAKAQAAAKQAAQLE 191
            MWRFDAVFAFGFD+IFS FLRYYP E+ERD LY ACA SL+LD+  I+ +AA V  WL+ KTE D+F ALN A PSASAD VGPV+EALAYIR +ADFDWYYSRLFGIGLIQ+M+AVG +L+ ANAEKWA ++GL+QSKFT+EMGAYLSNMERLKQAEQIFAEATAREAKKTAERLAA+AQAAAK+A QLE
Sbjct:  129 MWRFDAVFAFGFDAIFSAFLRYYPDERERDQLYVACAQSLHLDVHAIRRTAADVSAWLQDKTEADVFNALNAAPPSASADTVGPVVEALAYIRDAADFDWYYSRLFGIGLIQIMNAVGVELTVANAEKWAHRVGLMQSKFTAEMGAYLSNMERLKQAEQIFAEATAREAKKTAERLAARAQAAAKEADQLE 319          
BLAST of Gvermi7936.t1 vs. uniprot
Match: S0F2S3_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=S0F2S3_CHOCR)

HSP 1 Score: 198 bits (504), Expect = 4.540e-61
Identity = 107/197 (54.31%), Postives = 132/197 (67.01%), Query Frame = 0
Query:    1 MWRFDAVFAFGFDSIFSTFLRYYPSEQERDLLYAACASSLNLDIDLIKTSAASVRDWLEGKTEDDIFAALNTASPSASADAVGPVIEALAYIRHSADFDWYYSRLFGIGLIQVMDAVGAQLSAANAEKWADKIGLVQSKFTSEMGAYLSNMERLKQAEQIFAEATAREAKKTAERLAAKAQAAAKQAAQLEQEQQTD 197
            MWRFD+VFA+GFD +F  FLRYYP   ERD LY AC  S+ LD + I+++AA+V DWLEGK+E D+  AL  A   ASA  VGPVIEA+AY+RH+  FDWYYSR+FGIGLIQVM  VG  LS  NAE WAD + + +SKF +EMGAYLS+M                         AA+AQAAAK+A QLE+E + +
Sbjct:    1 MWRFDSVFAYGFDQVFEQFLRYYPDLDERDALYKACVESVRLDYNTIRSNAAAVGDWLEGKSEKDVLDALAAAPEGASAADVGPVIEAVAYVRHAGPFDWYYSRMFGIGLIQVMAKVGVDLSITNAEAWADAMKMEKSKFAAEMGAYLSSMXXXXXXXXXXXXXXXXXXXXXXXXXAARAQAAAKEADQLEKEDELE 197          
BLAST of Gvermi7936.t1 vs. uniprot
Match: A0A1X6PJF0_PORUM (Uncharacterized protein n=2 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PJF0_PORUM)

HSP 1 Score: 175 bits (443), Expect = 2.360e-50
Identity = 91/193 (47.15%), Postives = 136/193 (70.47%), Query Frame = 0
Query:    1 MWRFDAVFAFGFDSIFSTFLRYYPSEQERDLLYAACASSLNLDIDLIKTSAASVRDWLEGKTEDDIFAALNTASPSASADAVGPVIEALAYIRHSADFDWYYSRLFGIGLIQVMDAVGAQLSAANAEKWADKIGLVQSKFTSEMGAYLSNMERLKQAEQIFAEATAREAKKTAERLAAKAQAAAKQAAQLEQE 193
            MW++DA+FA+GFD  F+ FL++YP E ER  LY A A+SL    + +   A+SVR W EGK+E DIFA    AS + + DA  P + AL Y+ ++ +F++YYSRL GIG+I++M   G +L+  NA +W+D++ + ++K T+E+G Y + +ERLK AEQ+FAE  AR+A+KTAERL  +A+ AA +A + E+E
Sbjct:  136 MWKYDAIFAYGFDETFNEFLQFYPIESERTALYHAVANSLGFSPEELAKDASSVRSWAEGKSEADIFA----ASKAGAGDASEPAVAALQYVANADEFEFYYSRLHGIGVIKLMTGAGVELTPENAGRWSDELQVPKAKLTTELGTYEAAVERLKAAEQLFAEIAARDARKTAERLERRAEQAAAEATEAEKE 324          
BLAST of Gvermi7936.t1 vs. uniprot
Match: A0A7S3A1V4_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A1V4_9RHOD)

HSP 1 Score: 150 bits (379), Expect = 4.470e-41
Identity = 76/188 (40.43%), Postives = 122/188 (64.89%), Query Frame = 0
Query:    1 MWRFDAVFAFGFDSIFSTFLRYYPSEQERDLLYAACASSLN-LDIDLIKTSAASVRDWLEGKTEDDIFAALNTASPSASADAVGPVIEALAYIRHSADFDWYYSRLFGIGLIQVMDAVGAQLSAANAEKWADKIGLVQSKFTSEMGAYLSNMERLKQAEQIFAEATAREAKKTAERLAAKAQAAAKQA 187
            MWR+DAVF FGF  I   +  +YPS +E++ L++    +L+ LD+  ++    +V  ++ GKTED++ + + + S        GPV+ A  Y++ +  ++WYYSR FG G+I +++ +G +L+  N E+WA  IG  + K   E+G YLS++ERLKQAEQ+FA+  ARE KK A++LA  A+AA ++A
Sbjct:  109 MWRYDAVFGFGFTQIMDKYFSFYPSAEEKEKLFSCIVGALSGLDLQKMRDDTKAVEAFIAGKTEDEVLSMIESGSSE------GPVLSAFQYVKEAEFYEWYYSRNFGFGVIFIIEQLGGELTDENVERWAKAIGASEVKIKDELGVYLSSLERLKQAEQMFADLAAREKKKAADQLAVDAKAALEEA 290          
BLAST of Gvermi7936.t1 vs. uniprot
Match: A0A7S0BGJ2_9RHOD (Hypothetical protein (Fragment) n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BGJ2_9RHOD)

HSP 1 Score: 149 bits (377), Expect = 6.090e-41
Identity = 77/183 (42.08%), Postives = 117/183 (63.93%), Query Frame = 0
Query:    1 MWRFDAVFAFGFDSIFSTFLRYYPSEQERDLLYAACASSLN-LDIDLIKTSAASVRDWLEGKTEDDIFAALNTASPSASADAVGPVIEALAYIRHSADFDWYYSRLFGIGLIQVMDAVGAQLSAANAEKWADKIGLVQSKFTSEMGAYLSNMERLKQAEQIFAEATAREAKKTAERLAAKAQA 182
            MW +DAV+ FGF  I   +  +YPS +E++ L +    SL  LD+  ++  A ++  ++  KTEDD+ A + + S        GPV+ A  Y++ S  +DWYYSR FG G+I +++ +G +L+ AN E+WA  IG+ + K   E+G YLS++ERLKQAEQ+FA+  ARE KK A++LA  A+A
Sbjct:  108 MWHYDAVYGFGFIEIMEKYFSFYPSAEEKEKLLSCIVGSLTGLDLQTMRDDAKAIEAFVAEKTEDDVLAMIESGSRE------GPVLSAFQYVKESEFYDWYYSRSFGFGVIFIVEKLGGELTDANLERWAKAIGVSEVKIKDELGVYLSSLERLKQAEQMFADLAAREKKKAADQLAVDAKA 284          
BLAST of Gvermi7936.t1 vs. uniprot
Match: A0A7S1XEQ4_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XEQ4_9RHOD)

HSP 1 Score: 122 bits (306), Expect = 1.500e-30
Identity = 63/166 (37.95%), Postives = 103/166 (62.05%), Query Frame = 0
Query:    3 RFDAVFAFGFDSIFSTFLRYYPSEQERDLLYAACASSLNLDIDLIKTSAASVRDWLEG-KTEDDIFAALNTASPSASADAVGPVIEALAYIRHSADFDWYYSRLFGIGLIQVMDAVGAQLSAANAEKWADKIGLVQSKFTSEMGAYLSNMERLKQAEQIFAEATAR 167
            R+D +F +GF   F+ FL  YP+E +R LL+ A   +L+LD   I+  A +VR WLE   +ED++F+ L++   +        V +AL Y+  +  F+W+YSR+FGIGL ++M+ VG ++      +W++K+ +  +K   E  +Y S +E++K AEQ+FAE TAR
Sbjct:   79 RYDPIFGYGFTESFNDFLANYPNEGDRTLLFDAIIKALDLDRQQIRDDAEAVRSWLESVSSEDEVFSLLDSPGNN-------KVAQALHYVATAPYFEWFYSRVFGIGLFKIMEKVGVKIDQEALRRWSEKLNISIAKLEDEWASYGSAIEKMKVAEQLFAEVTAR 237          
BLAST of Gvermi7936.t1 vs. uniprot
Match: A0A7S0ZHJ1_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZHJ1_9RHOD)

HSP 1 Score: 121 bits (304), Expect = 9.130e-30
Identity = 71/181 (39.23%), Postives = 105/181 (58.01%), Query Frame = 0
Query:    3 RFDAVFAFGFDSIFSTFLRYYPSEQERDLLYAACASSLNLDIDLIKTSAASVRDWLEGKTEDDIFAALNTASPSASADAVGPVIEALAYIRHSADFDWYYSRLFGIGLIQVMDAVGAQLSAANAEKWADKIGLVQSKFTSEMGAYLSNMERLKQAEQIFAEATAREAKKTAERLAAKAQAA 183
             +DA+FA+GF+  F+ FL+YYPSE E++ L+     +L LD+  I+  AASVR W+EGKT +D+FA  +      SAD    V  A    R +    ++ SR+F +G + +++AV A     + EK A  + +        M    + ME+LK AEQ+FAE  AR+ +K AERLA KA+ A
Sbjct:  122 NYDAIFAYGFEESFNRFLQYYPSESEKERLFECLLKALELDVGKIRKDAASVRQWVEGKTIEDLFAVAD-----GSADDGSSVASAFRTARENDRMSFHISRMFALGCVYLLEAVKADAEGEDCEKLAAVLDVSAFGIKDAMDQNRAGMEKLKAAEQLFAEVAARDKRKNAERLAEKAKLA 297          
BLAST of Gvermi7936.t1 vs. uniprot
Match: M1VAS6_CYAM1 (Photosystem II biogenesis protein Psb29 n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1VAS6_CYAM1)

HSP 1 Score: 121 bits (303), Expect = 1.440e-29
Identity = 70/192 (36.46%), Postives = 116/192 (60.42%), Query Frame = 0
Query:    1 MWRFDAVFAFGFDSIFSTFLRYYPSEQERDLLYAACASSLNLDIDLIKTSAASVRDWLEGKTEDDIFAALNTASPSASADAVGPVIEALAYIRHSADFDWYYSRLFGIGLIQVMDAVGAQLSAANAEKWADKIGLVQSKFTSEMGAYLSNMERLKQAEQIFAEATAREAKKTAERLAAKAQAAAKQAAQLEQ 192
            M+R+D +FA GF S++  F R YP   ER+ L+     +L+LD+  +   A     +++GKTE ++   +   +   SA+A  PVI AL   R  AD ++YY+RLFGIGL+++M + G +++  + +KWA+ + +  ++   ++G Y  +ME+L QAE +F E  ARE  + A+ LA KAQ A ++  + EQ
Sbjct:  127 MFRYDVIFALGFVSVYRDFFRSYPRPDERESLFRCICDALDLDVGQVTKEADDALAYVQGKTEAELIEEIERDTGEDSAEAQ-PVIAALRACRR-ADGEYYYTRLFGIGLMKIMSSCGVEINLESVKKWANMLKISYARLDQDIGTYQMSMEKLTQAEVMFKELEARERARIADELARKAQEAEEELRKREQ 316          
BLAST of Gvermi7936.t1 vs. uniprot
Match: A0A5J4Z783_PORPP (Protein THYLAKOID FORMATION 1, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z783_PORPP)

HSP 1 Score: 120 bits (301), Expect = 1.900e-29
Identity = 68/193 (35.23%), Postives = 112/193 (58.03%), Query Frame = 0
Query:    1 MWRFDAVFAFGFDSIFSTFLRYYPSEQERDLLYAACASSLNLDIDLIKTSAASVRDWLEGKTEDDIFAALNTASPSASADAVGPVIEALAYIRHSADFDWYYSRLFGIGLIQVMDAVGAQLSAANAEKWADKIGLVQSKFTSEMGAYLSNMERLKQAEQIFAEATAREAKKTAERLAAKAQAAAKQAAQLEQE 193
            M+ +DA+FA+GF   F  F  +YP E++R  L+     +L LD   + + A++V+ W EGKT  D+ A  + +S   S   +   + A    R      +++SR+F +G++ +++AVG + +   A+K A+K+G         M  Y + MERLK AEQ++AE  AR++K+ AERLA KA+ A ++A + E E
Sbjct:  110 MFTYDAMFAYGFKESFDRFFAFYPDEEQRKRLFTCMLQALELDEKKLVSDASAVKAWTEGKTVADLMAIADGSSEDTSCPGL---VSAFKVAREKKPMFYHFSRMFSLGIVYLLEAVGGKTTQEEADKIAEKLGKTSYYIKDAMDQYRAGMERLKAAEQLYAEVNARDSKRLAERLAEKAKRAEEEALRAENE 299          
BLAST of Gvermi7936.t1 vs. uniprot
Match: A0A7S0XWV0_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis TaxID=77924 RepID=A0A7S0XWV0_HEMAN)

HSP 1 Score: 116 bits (291), Expect = 6.020e-28
Identity = 77/195 (39.49%), Postives = 114/195 (58.46%), Query Frame = 0
Query:    4 FDAVFAFGFDSIFSTFLRYYPSEQERDLLYAACASSLNLDIDLIKTSAASVRDWLEGKTEDDIFAALNTASPSASADAVGPVIEALAYIRHSADFDWYYSRLFGIGLIQVMDAVGAQLSAANAEKWADKIGLVQ----------SKFTSEMGAYLSNMERLKQAEQIFAEATAREAKKTAERLAAKAQAAAKQAA 188
            +DA +A G  S F  F +   ++  R  L+ A  ++L L+ + I+  A  V  W +GKTE DI AA+N    S     VG +   L+  + + + DW Y+R FG GLI+ M  VG + + ANA+KWA+ IG+ +          S+F S++G +LS++E+ +Q  Q+FAE  ARE KK AERLA  A+ AAK+AA
Sbjct:  125 YDAFWACGVFSTFDVFFQGIDADT-RTKLFDALMTALKLEPETIRADAEKVLSWAQGKTEADIVAAMNGEDQS----EVGSI---LSKAKSAGEDDWIYTRNFGAGLIKTMQVVGVEPNTANAKKWAEAIGISENTSAMTGLSMSRFESDVGVFLSSVEKFQQVIQLFAEVEAREKKKVAERLAGMAEEAAKEAA 311          
The following BLAST results are available for this feature:
BLAST of Gvermi7936.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IRB1_9FLOR4.560e-9578.01Protein THYLAKOID FORMATION 1, chloroplastic n=1 T... [more]
S0F2S3_CHOCR4.540e-6154.31Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6PJF0_PORUM2.360e-5047.15Uncharacterized protein n=2 Tax=Porphyra umbilical... [more]
A0A7S3A1V4_9RHOD4.470e-4140.43Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S0BGJ2_9RHOD6.090e-4142.08Hypothetical protein (Fragment) n=2 Tax=Rhodosorus... [more]
A0A7S1XEQ4_9RHOD1.500e-3037.95Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S0ZHJ1_9RHOD9.130e-3039.23Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
M1VAS6_CYAM11.440e-2936.46Photosystem II biogenesis protein Psb29 n=1 Tax=Cy... [more]
A0A5J4Z783_PORPP1.900e-2935.23Protein THYLAKOID FORMATION 1, chloroplastic n=1 T... [more]
A0A7S0XWV0_HEMAN6.020e-2839.49Hypothetical protein n=2 Tax=Hemiselmis TaxID=7792... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 212..213
NoneNo IPR availableCOILSCoilCoilcoord: 166..193
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 184..213
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 187..213
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..23
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 24..213
IPR017499Protein Thf1PFAMPF11264ThylakoidFormatcoord: 3..175
e-value: 5.7E-27
score: 94.8
IPR017499Protein Thf1PANTHERPTHR34793PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTICcoord: 2..191

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:178967..179608 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7936.t1Gvermi7936.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24226 178967..179608 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi7936.t1 ID=Gvermi7936.t1|Name=Gvermi7936.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=214bp
MWRFDAVFAFGFDSIFSTFLRYYPSEQERDLLYAACASSLNLDIDLIKTS
AASVRDWLEGKTEDDIFAALNTASPSASADAVGPVIEALAYIRHSADFDW
YYSRLFGIGLIQVMDAVGAQLSAANAEKWADKIGLVQSKFTSEMGAYLSN
MERLKQAEQIFAEATAREAKKTAERLAAKAQAAAKQAAQLEQEQQTDDGA
QSAQVPSATEPST*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017499Thf1