Gvermi7923.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi7923.t1
Unique NameGvermi7923.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length504
Homology
BLAST of Gvermi7923.t1 vs. uniprot
Match: R7QHN1_CHOCR (DNA ligase (NAD(+)) n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHN1_CHOCR)

HSP 1 Score: 190 bits (483), Expect = 9.490e-49
Identity = 114/285 (40.00%), Postives = 148/285 (51.93%), Query Frame = 0
Query:  287 ERLRAAIHPYGSVERTDAQREARAKYIGGKPRTSEALFRYTSFLSGGEFDMIIDRLRAQWLERVQYEALGKAVRPNQDMRFLYNKLIDEIKFCDEMYYADDPKPRISDEEYDEL------------------------------------------------------------------------LSLDNEYSHADLTVFVNRALAVQSEISAEPKIEGVALSLEYHDRKLCRALTRGTGWVGDDITENVRESLMGRGVVNNIPDASAPDSLIVRGEVYITKED 499
            +R    +HP+GS +RT+A+REAR  Y+   P   E   R T  LSGG+ DM++  LRA++LERV   A  + V+   D+  +Y KL+DEI  CD +YY+D+PKPRISDE+YDEL                                                                        LSLDN Y H DL  F  RA    S+ISAE K++G+ALSLEYH+ KL  A TRG G +G+DIT+NVR +L+GRGVV+ I D  APD ++VRGE YI   D
Sbjct:  107 DRTGVGLHPFGSSKRTEAEREARINYVAS-PVGREIAQRITGMLSGGKADMLLHVLRARFLERVDKVAYDEEVKLTPDIGKVYMKLLDEIMLCDSLYYSDNPKPRISDEQYDELIMHLIELERFFPELIRPESPSQNVGHGAAARSSKLGLDSEIADKPITARDSFAATVPITEKRFPQYRHKALMLSLDNAYKHDDLVSFARRAADANSDISAELKVDGIALSLEYHNGKLAAAATRGNGRIGEDITDNVRAALVGRGVVDAIEDPLAPDLILVRGEAYIAPHD 390          
BLAST of Gvermi7923.t1 vs. uniprot
Match: A0A2V3ITT3_9FLOR (DNA ligase (NAD(+)) n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITT3_9FLOR)

HSP 1 Score: 166 bits (421), Expect = 1.390e-40
Identity = 78/116 (67.24%), Postives = 95/116 (81.90%), Query Frame = 0
Query:  286 IERLRAAIHPYGSVERTDAQREARAKYIGGKPRTSEALFRYTSFLSGGEFDMIIDRLRAQWLERVQYEALGKAVRPNQDMRFLYNKLIDEIKFCDEMYYADDPKPRISDEEYDELL 401
            ++R  A IHPYGS ERTDA+REARAK + GKP TSEALFRYT  LSGGE DM+IDRLR  WLER+    +G+ +R  +D+RFL+ KLI+EIK CDE+YYAD+PKPRISD+EYDEL+
Sbjct:   71 LDRPGAGIHPYGSRERTDAEREARAKLVAGKPGTSEALFRYTEMLSGGECDMLIDRLRTLWLERLDILGMGRPIRLTKDVRFLHGKLIEEIKLCDELYYADEPKPRISDQEYDELV 186          
BLAST of Gvermi7923.t1 vs. uniprot
Match: A0A2V3IQ91_9FLOR (DNA ligase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQ91_9FLOR)

HSP 1 Score: 156 bits (394), Expect = 1.750e-39
Identity = 80/100 (80.00%), Postives = 90/100 (90.00%), Query Frame = 0
Query:  400 LLSLDNEYSHADLTVFVNRALAVQSEISAEPKIEGVALSLEYHDRKLCRALTRGTGWVGDDITENVRESLMGRGVVNNIPDASAPDSLIVRGEVYITKED 499
            +LSLDN Y+HA +T FVNRALAVQSEISAE KI+GVALSLEY +R+LCRAL RGTG  GDDIT+NVRESLMGR VV++IPD+SAPD LIVRGEVYITKED
Sbjct:  209 MLSLDNAYNHAHITAFVNRALAVQSEISAEVKIDGVALSLEYQNRELCRALNRGTGRHGDDITDNVRESLMGREVVDSIPDSSAPDFLIVRGEVYITKED 308          
BLAST of Gvermi7923.t1 vs. uniprot
Match: A0A2V3IW52_9FLOR (DNA ligase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IW52_9FLOR)

HSP 1 Score: 119 bits (297), Expect = 1.290e-25
Identity = 57/100 (57.00%), Postives = 79/100 (79.00%), Query Frame = 0
Query:  400 LLSLDNEYSHADLTVFVNRALAVQSEISAEPKIEGVALSLEYHDRKLCRALTRGTGWVGDDITENVRESLMGRGVVNNIPDASAPDSLIVRGEVYITKED 499
            +LSLDN Y++++LT F+  A   +S+I+AE KI+GVALSLEY +  LC ALTRGT  +GDD+TENVRE+L+GRGV   IPDA+ PD +++RGE+Y +K +
Sbjct:  133 MLSLDNGYTYSELTAFMKWASLAKSKIAAELKIDGVALSLEYRNGHLCHALTRGTERIGDDVTENVREALLGRGVEECIPDAAVPDMVVIRGELYTSKAE 232          
BLAST of Gvermi7923.t1 vs. uniprot
Match: A0A2V3ITQ5_9FLOR (DNA ligase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITQ5_9FLOR)

HSP 1 Score: 90.9 bits (224), Expect = 2.510e-18
Identity = 46/68 (67.65%), Postives = 56/68 (82.35%), Query Frame = 0
Query:  432 IEGVALSLEYHDRKLCRALTRGTGWVGDDITENVRESLMGRGVVNNIPDASAPDSLIVRGEVYITKED 499
            ++GVALSLEY  ++LCRALTRGTG  GDDIT++VRES MGR VV++  D+S PD + VRGEV ITKED
Sbjct:    1 MDGVALSLEYQSQELCRALTRGTGRHGDDITDHVRESRMGREVVDSTFDSSVPDFVFVRGEVCITKED 68          
BLAST of Gvermi7923.t1 vs. uniprot
Match: A0A2V5XGB2_9BACT (DNA ligase n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V5XGB2_9BACT)

HSP 1 Score: 82.8 bits (203), Expect = 4.950e-13
Identity = 58/163 (35.58%), Postives = 84/163 (51.53%), Query Frame = 0
Query:  348 ERVQYEALGKAVRPNQDMRFLYNKLIDEIKFCDEMYYADDPKPRISDEEYDE---------LLSLDNEYSHADLTVFVNRALAVQSE----ISAEPKIEGVALSLEYHDRKLCRALTRGTGWVGDDITENVRESLMGRGVVNNIPDASAPDSLIVRGEVYITK 497
            +R  YE     +  +++   LY +L+D  K   E+   D P  R+  +  +          +LSLDN YS  ++  F  R   +  +    +  EPK++GVA+SL Y D KL  A TRG G+VGDDIT+N++     R V   +P A AP    VRGEVY+ K
Sbjct:   23 DRRYYEEAAPII-SDREYDLLYQELVDLEKQFPELITPDSPTQRVGGKPLEAFSQIEHRVPMLSLDNTYSEQEVVSFYKRISRLLPDETIPVVIEPKVDGVAVSLLYEDGKLTYAATRGDGFVGDDITQNIKTI---RSVPARLPGA-APKVFEVRGEVYMDK 180          
BLAST of Gvermi7923.t1 vs. uniprot
Match: A0A1J4XGM4_9BACT (DNA ligase n=1 Tax=Verrucomicrobia bacterium CG1_02_43_26 TaxID=1805421 RepID=A0A1J4XGM4_9BACT)

HSP 1 Score: 81.6 bits (200), Expect = 1.090e-12
Identity = 58/178 (32.58%), Postives = 92/178 (51.69%), Query Frame = 0
Query:  334 EFDMIIDRLRAQWLERVQYEALGKAVRPNQDMRFLYNKLIDEIKFCDEMYYADDPKPRISDEEYDE---------LLSLDNEYSHADLTVF---VNRALAVQS-EISAEPKIEGVALSLEYHDRKLCRALTRGTGWVGDDITENVRESLMGRGVVNNIPDASAPDSLIVRGEVYITKE 498
            E D  I  LRA   E  +++ L       +   F Y++L+ E++  +  Y       ++ D+  +          +LS+DN YS  ++  F   ++R L  +  E   EPKI+GVA+SL Y   KL RALTRG G  GDDIT N+R      G+ + +   + P+ + +RGEVY+T++
Sbjct:    5 EVDKKIHSLRA---EIARHDELYYRKAAPEISDFEYDRLVQELEALEARYPEFAEAKKVGDDRIESFQSYTHREPMLSIDNSYSMGEVVEFEKRIHRVLREEPLEYVVEPKIDGVAVSLTYEKGKLVRALTRGNGVEGDDITHNIRTI---HGLPHALKGKNVPEVIEIRGEVYMTED 176          
BLAST of Gvermi7923.t1 vs. uniprot
Match: A0A7C6B0P0_9BACT (DNA ligase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C6B0P0_9BACT)

HSP 1 Score: 80.9 bits (198), Expect = 1.920e-12
Identity = 63/179 (35.20%), Postives = 89/179 (49.72%), Query Frame = 0
Query:  339 IDRLRAQWLERVQYEALGKAVRPNQDMRFL-YNKLIDEIKFCD----EMYYADDPKPRISDEEYDEL---------LSLDNEYSHADLTVFVNRALAVQS----EISAEPKIEGVALSLEYHDRKLCRALTRGTGWVGDDITENVRESLMGRGVVNNIPDASAPDSLIVRGEVYITKED 499
            I RLR    E ++Y      V  + ++  L Y++L+  ++  +    E+   D P  RI D   + L         LS+DN YS  ++  F  RA  +      E   EPKI+GVA+S+ Y   +L R LTRG G+VGDD+T N+R     RGV   +     P  L VRGEV+IT  D
Sbjct:    9 IQRLR----ELIRYHDYKYYVAASPEISDLEYDRLMQRLRDLEAAHPELVTPDSPTQRIGDRPIEGLEQVAHRVPMLSIDNTYSAQEVRNFAQRAQKLLRDEPIEWVVEPKIDGVAVSITYESGQLVRGLTRGDGFVGDDVTHNIRTV---RGVPLRLLGTDHPPVLEVRGEVFITNSD 180          
BLAST of Gvermi7923.t1 vs. uniprot
Match: A0A0Q4CRX5_9SPHN (DNA ligase n=8 Tax=Bacteria TaxID=2 RepID=A0A0Q4CRX5_9SPHN)

HSP 1 Score: 80.9 bits (198), Expect = 2.010e-12
Identity = 67/191 (35.08%), Postives = 87/191 (45.55%), Query Frame = 0
Query:  361 PNQD-MRFLYNKLIDEIKFCDEMYYADDPKPRISDEEYDEL-----------------------------------------LSLDNEYSHADLTVFV---NRALAVQSE----ISAEPKIEGVALSLEYHDRKLCRALTRGTGWVGDDITENVRESLMGRGVVNNIPD---ASAPDSLIVRGEVYITKED 499
            P QD  R     L D I   D  Y+ DD  P ISD EYD L                                         LSL+N ++  D+  FV    R L +  +    ++AEPKI+G++ SL Y DR+L RALTRG G VG+D+T NV         + +IP    A+APD   VRGEVY+ K+D
Sbjct:    8 PTQDEARAELADLADRIARADTAYHGDDA-PEISDAEYDALVRRNRAIEAAFPDLVRTDSPSLRVGSAPSGHLAKVAHARPMLSLNNAFADEDVAEFVASIRRFLRLSDDEAVALTAEPKIDGLSCSLRYEDRRLVRALTRGDGAVGEDVTANVA-------TIADIPQTLPAAAPDVFEVRGEVYMAKQD 190          
BLAST of Gvermi7923.t1 vs. uniprot
Match: A0A2V5UZ84_9BACT (NAD-dependent DNA ligase LigA n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V5UZ84_9BACT)

HSP 1 Score: 78.6 bits (192), Expect = 2.550e-12
Identity = 63/178 (35.39%), Postives = 93/178 (52.25%), Query Frame = 0
Query:  339 IDRLRAQWLE--RVQYEALGKAVRPNQDMRFLYNKLID-EIKFCDEMYYADDPKPRISDEEYDE---------LLSLDNEYSHADLTVFVNRA--LAVQSEISA--EPKIEGVALSLEYHDRKLCRALTRGTGWVGDDITENVRESLMGRGVVNNIPD---ASAPDSLIVRGEVYITK 497
            I +LR Q  E  R  YE     +  +++   LY +L+D E +F  ++   D P  R+  +  +          +LSLDN YS  ++  F  R   L    +IS   EPK++GVA+SL Y +R+L +A TRG G VGDDIT+N++        + +IP+    S P    VRGEVY+ K
Sbjct:   12 IAQLRQQIREHDRHYYEEAAPVI-SDREYDLLYKELVDLEAEFA-QLVSPDSPTQRVGGKPLEAFAQIAHRMPMLSLDNTYSEEEVANFYKRISRLLPDEKISVVIEPKVDGVAVSLLYENRRLRQAATRGDGSVGDDITQNIK-------TIRSIPERLHGSGPKVFEVRGEVYMDK 180          
The following BLAST results are available for this feature:
BLAST of Gvermi7923.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QHN1_CHOCR9.490e-4940.00DNA ligase (NAD(+)) n=1 Tax=Chondrus crispus TaxID... [more]
A0A2V3ITT3_9FLOR1.390e-4067.24DNA ligase (NAD(+)) n=1 Tax=Gracilariopsis chorda ... [more]
A0A2V3IQ91_9FLOR1.750e-3980.00DNA ligase n=1 Tax=Gracilariopsis chorda TaxID=448... [more]
A0A2V3IW52_9FLOR1.290e-2557.00DNA ligase n=1 Tax=Gracilariopsis chorda TaxID=448... [more]
A0A2V3ITQ5_9FLOR2.510e-1867.65DNA ligase n=1 Tax=Gracilariopsis chorda TaxID=448... [more]
A0A2V5XGB2_9BACT4.950e-1335.58DNA ligase n=1 Tax=Verrucomicrobia bacterium TaxID... [more]
A0A1J4XGM4_9BACT1.090e-1232.58DNA ligase n=1 Tax=Verrucomicrobia bacterium CG1_0... [more]
A0A7C6B0P0_9BACT1.920e-1235.20DNA ligase n=1 Tax=Planctomycetes bacterium TaxID=... [more]
A0A0Q4CRX5_9SPHN2.010e-1235.08DNA ligase n=8 Tax=Bacteria TaxID=2 RepID=A0A0Q4CR... [more]
A0A2V5UZ84_9BACT2.550e-1235.39NAD-dependent DNA ligase LigA n=1 Tax=Verrucomicro... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 272..292
NoneNo IPR availableGENE3D3.30.470.30DNA ligase/mRNA capping enzymecoord: 427..502
e-value: 3.8E-17
score: 64.5
NoneNo IPR availableGENE3D1.10.287.610Helix hairpin bincoord: 356..410
e-value: 2.2E-5
score: 26.1
NoneNo IPR availableSUPERFAMILY56091DNA ligase/mRNA capping enzyme, catalytic domaincoord: 366..500
IPR012296Nuclease, putative, TT1808GENE3D3.90.1570.10tt1808, chain Acoord: 55..250
e-value: 5.8E-14
score: 53.6
IPR008538Putative restriction endonucleasePFAMPF05685Uma2coord: 63..236
e-value: 3.2E-11
score: 43.1
IPR008538Putative restriction endonucleaseCDDcd06260DUF820coord: 68..220
e-value: 4.914E-6
score: 44.7277
IPR013839NAD-dependent DNA ligase, adenylationPFAMPF01653DNA_ligase_adencoord: 400..499
e-value: 3.0E-20
score: 72.6
IPR011335Restriction endonuclease type II-likeSUPERFAMILY52980Restriction endonuclease-likecoord: 127..228

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:3914..8809 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7923.t1Gvermi7923.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24226 3914..8809 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi7923.t1 ID=Gvermi7923.t1|Name=Gvermi7923.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=504bp
MLRWSKSLKWKGYIEVAKKFGGEGQFGSKAGDKPKTEYLQSILDSQFVFT
PCGNAMETQRVLDEEYLYDLVDDILISNPIMGSREHEGCINKLMRKVKED
SSRGKHLYWPFANARIEIPASNVLKRLLGKRTTRRADLLVLRSDAYSRSS
SRTRTRATDTNVLVRLNDRKPKLVLEVTSRSSSRHADLNAKVNEYQRRRI
DTYVIVDRATSSPSVIVYRRLNSHRSRYTKRVYRGSQRVRCHIFDGMSTE
DMLTPLEEDAEKRDLSQRFETESRLVDENRRQSEEIERLRAAIHPYGSVE
RTDAQREARAKYIGGKPRTSEALFRYTSFLSGGEFDMIIDRLRAQWLERV
QYEALGKAVRPNQDMRFLYNKLIDEIKFCDEMYYADDPKPRISDEEYDEL
LSLDNEYSHADLTVFVNRALAVQSEISAEPKIEGVALSLEYHDRKLCRAL
TRGTGWVGDDITENVRESLMGRGVVNNIPDASAPDSLIVRGEVYITKEDT
SMK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012296Nuclease_put_TT1808
IPR008538Uma2
IPR013839DNAligase_adenylation
IPR011335Restrct_endonuc-II-like