Gvermi775.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi775.t1
Unique NameGvermi775.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length139
Homology
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BLAST of Gvermi775.t1 vs. uniprot
Match: A0A2V3IDE9_9FLOR (Ribosomal_L28e domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IDE9_9FLOR)

HSP 1 Score: 219 bits (557), Expect = 2.530e-71
Identity = 111/138 (80.43%), Postives = 122/138 (88.41%), Query Frame = 0 
Query:    1 MSEALLWRIIRKNNSKTVMSPTPRTVRVYEKGSLCSLYTKGDSGFSRITAVDVSPNEDGIPVLSLKNRKPENRRNPDKMWRSITLSGGVRKALARTDKLLSSYAPSKKKGALRKVSALYKALARKNNGVDHTKFIATE 138
            MSEALLW++IRKNNS+T+ S  PRT R YEKGSL +L +K DSGF  IT V+VS NEDG+PVLSLKNRKPE RRNPDKMWR+ITLSGGVRKALARTDKLL+SYAPSKKK ALRKVSA+YKA ARKN GVDHTKFIATE
Sbjct:    1 MSEALLWQLIRKNNSRTLCSRNPRTARTYEKGSLRNLISKTDSGFCNITVVNVSANEDGLPVLSLKNRKPEARRNPDKMWRTITLSGGVRKALARTDKLLTSYAPSKKKDALRKVSAIYKAYARKNKGVDHTKFIATE 138
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BLAST of Gvermi775.t1 vs. uniprot
Match: R7QP82_CHOCR (Ribosomal_L28e domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QP82_CHOCR)

HSP 1 Score: 147 bits (372), Expect = 3.060e-43
Identity = 78/129 (60.47%), Postives = 92/129 (71.32%), Query Frame = 0 
Query:    1 MSEALLWRIIRKNNSKTVMSPTPRTVRVYEKGSLCSLYTKGDSGFSRITAVDVSPNEDGIPVLSLKNRKPENRRNPDKMWRSITLSGGVRKALARTDKLLSSYAPSKKKGALRKVSALYKALARKNNGV 129
            MSEAL+W +++  +SK +    P  V   EKGSLC   T  DSG +RI AVDVS N+DGIPVL++KN  PE  R PDKMWR +TLSGGVRKAL+ TD LLS Y P+ KK A+RKVSA Y ALARKN  V
Sbjct:    1 MSEALIWEVMKSYSSKGMRRTHPVGVFTREKGSLCHKRTLRDSGLARIRAVDVSINDDGIPVLAIKNANPEESRLPDKMWREVTLSGGVRKALSTTDSLLSDYKPALKKPAMRKVSAAYMALARKNKAV 129
The following BLAST results are available for this feature:
BLAST of Gvermi775.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IDE9_9FLOR2.530e-7180.43Ribosomal_L28e domain-containing protein n=1 Tax=G... [more]
R7QP82_CHOCR3.060e-4360.47Ribosomal_L28e domain-containing protein n=1 Tax=C... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.390.110coord: 2..125
e-value: 2.8E-15
score: 58.9
IPR029004Ribosomal L28e/Mak16PFAMPF01778Ribosomal_L28ecoord: 5..120
e-value: 3.3E-14
score: 53.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:174040..174456 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi775.t1Gvermi775.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_2952 174040..174456 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi775.t1 ID=Gvermi775.t1|Name=Gvermi775.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=139bp
MSEALLWRIIRKNNSKTVMSPTPRTVRVYEKGSLCSLYTKGDSGFSRITA
VDVSPNEDGIPVLSLKNRKPENRRNPDKMWRSITLSGGVRKALARTDKLL
SSYAPSKKKGALRKVSALYKALARKNNGVDHTKFIATE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029004L28e/Mak16