Gvermi7708.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi7708.t1
Unique NameGvermi7708.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length193
Homology
[Close]
BLAST of Gvermi7708.t1 vs. uniprot
Match: A0A2V3IZY8_9FLOR (Peptide chain release factor 3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZY8_9FLOR)

HSP 1 Score: 63.5 bits (153), Expect = 1.970e-8
Identity = 41/65 (63.08%), Postives = 46/65 (70.77%), Query Frame = 0 
Query:    2 AYKKFRKEPNQLLEKGAVQLLRDREDEENEDPIQEAVELLQFEVVQSFSRRKNVDHEIWNNLLPL 66
            AYK FRK  NQLLE+GAVQLLR REDE NEDPI  AV  LQFEVVQ   RR   ++ + + L PL
Sbjct:  438 AYKNFRKGLNQLLEEGAVQLLRAREDEGNEDPILAAVGQLQFEVVQ---RRLKDEYNVESGLEPL 499
[Close]
BLAST of Gvermi7708.t1 vs. uniprot
Match: R7QD27_CHOCR (Peptide chain release factor RF3 (GTP-binding subunit), Rhodoplastic n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QD27_CHOCR)

HSP 1 Score: 56.2 bits (134), Expect = 6.250e-6
Identity = 35/65 (53.85%), Postives = 45/65 (69.23%), Query Frame = 0 
Query:    2 AYKKFRKEPNQLLEKGAVQLLRDREDEENEDPIQEAVELLQFEVVQSFSRRKNVDHEIWNNLLPL 66
            AYK FRK  NQLL++GAVQ+LR + D+ NEDPI  AV  LQFEVVQ   RR   ++ + + L P+
Sbjct:  420 AYKNFRKGLNQLLDEGAVQMLRAKGDQGNEDPIMAAVGQLQFEVVQ---RRLKDEYNVDSKLEPM 481
The following BLAST results are available for this feature:
BLAST of Gvermi7708.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IZY8_9FLOR1.970e-863.08Peptide chain release factor 3 n=1 Tax=Gracilariop... [more]
R7QD27_CHOCR6.250e-653.85Peptide chain release factor RF3 (GTP-binding subu... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 11..31
IPR038467Peptide chain release factor 3, domain III superfamilyGENE3D3.30.70.3280Peptide chain release factor 3, domain IIIcoord: 1..115
e-value: 1.8E-6
score: 29.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:2904166..2906478 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7708.t1Gvermi7708.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_64 2904166..2906478 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi7708.t1 ID=Gvermi7708.t1|Name=Gvermi7708.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=193bp
MAYKKFRKEPNQLLEKGAVQLLRDREDEENEDPIQEAVELLQFEVVQSFS
RRKNVDHEIWNNLLPLLARLDCDDKATEVAEKIDHSIRTENSFIAYNQER
IQALARHCESSEEIYRNFAEEEADYKQVITRGGVISMSKPEGYQIGEVHF
TEAMKELYSSPIAVAYSSEMNLKQGYKDHGMYKKAQEFLEKH*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038467RF3_dom_3_sf