Gvermi7673.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi7673.t1
Unique NameGvermi7673.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length230
Homology
BLAST of Gvermi7673.t1 vs. uniprot
Match: A0A2V3ISI4_9FLOR (VWFA domain-containing protein n=3 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISI4_9FLOR)

HSP 1 Score: 231 bits (588), Expect = 3.590e-73
Identity = 119/231 (51.52%), Postives = 160/231 (69.26%), Query Frame = 0
Query:    1 MLALISAFALFFSLGCCMSHEDAKLMYKSTVRAAVAEVERRGCSVNVCFAVDTSGSVSSTDFNLEKDFLIDITSIVGADPRSKFAAGQYGVRTYQISSLTSNVEEFNLRVRGAMYKNDRATSMGSGIVFCHRQLRREMRKNPYSNHANKLIVLGDGRNNMGGDPVRRARIFKYRTNGLISTVGISF---QNTALLTEIAGSTDRVFAIDDYVELSFVIDDLVFEICGIALE 228
            ML      AL F+   C S E+AKL Y++T+R A   VE RGC  +VCFA+DTSGSV+   F   +DF++DIT+I+G D R+KFAAGQYG RTY+I+S+T +V  FN  V  + Y++D  TS+GSGIVFCH QLRR  +K   +N  NK++V+GDGRN +GGDP+RRA  F+ +  G ISTV I +   +   +L+E+AG    VF +DDY ELS  ++DLV EICGI+L+
Sbjct:    1 MLKFFFVLALLFAYASCRSVEEAKLRYQNTIRTASEAVEARGCLAHVCFALDTSGSVTKQQFFYGRDFILDITAILGNDRRTKFAAGQYGRRTYKIASMTGDVATFNTEVGFSPYRHDSQTSVGSGIVFCHSQLRRARKKAADANIVNKMVVIGDGRNTLGGDPIRRANNFRRKVGGEISTVSIGYPGKEGERILSEVAGENGGVFTVDDYDELSEKVEDLVAEICGISLD 231          
BLAST of Gvermi7673.t1 vs. uniprot
Match: A0A2V3IBU0_9FLOR (VWFA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IBU0_9FLOR)

HSP 1 Score: 218 bits (554), Expect = 2.580e-67
Identity = 112/215 (52.09%), Postives = 152/215 (70.70%), Query Frame = 0
Query:   17 CMSHEDAKLMYKSTVRAAVAEVERRGCSVNVCFAVDTSGSVSSTDFNLEKDFLIDITSIVGADPRSKFAAGQYGVRTYQISSLTSNVEEFNLRVRGAMYKNDRATSMGSGIVFCHRQLRREMRKNPYSNHANKLIVLGDGRNNMGGDPVRRARIFKYRTNGLISTVGISF---QNTALLTEIAGSTDRVFAIDDYVELSFVIDDLVFEICGIALE 228
            C S E+AKL Y++T+R A   VE RGC  +VCFA+DTSGSV+   F+  +DF++DIT+I+G D R+KFAAGQYG RTY+I+S+T +V  FN  V  + Y++D  TS+GSGIVFCH QLRR  +    +N  NK++V+GDGRN    DP+RRA  F+ +  G ISTV I +   +   +L+E+AG T  VF +DDY ELS  ++DLV EICGI+L+
Sbjct:   71 CRSVEEAKLRYQNTIRTASEAVEARGCLAHVCFALDTSGSVTKQQFSKGRDFILDITAILGNDRRTKFAAGQYGRRTYKIASMTGDVATFNTEVGFSPYRHDSQTSVGSGIVFCHSQLRRARKNAADANIVNKMVVIGDGRNTF--DPIRRANNFRRKVGGEISTVSIGYPGKEGERILSEVAGETGGVFTVDDYDELSEKVEDLVVEICGISLD 283          
BLAST of Gvermi7673.t1 vs. uniprot
Match: A0A2V3ID60_9FLOR (Cartilage matrix protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ID60_9FLOR)

HSP 1 Score: 132 bits (332), Expect = 1.060e-34
Identity = 77/190 (40.53%), Postives = 115/190 (60.53%), Query Frame = 0
Query:   38 VERRGCSVNVCFAVDTSGSVSSTDFNLEKDFLIDITSIVGAD-PRSKFAAGQYGVRTYQISSLTSNVEEFNLRVRGAMYKNDRATSMGSGIVFCHRQLRREMRKNPYSNHANKLIVLGDGRNNMGGDPVRRARIFK-YRTNGLISTVGISFQNTALLTEIA-GSTDRVFAIDDYVELSFVIDDLVFEICG 224
            VER GC++NVCFA+D S SV+  D+ ++KDF+  +++++  +   S F+A QYG +   IS LT ++++FNL+V  +     + +S+G GI +C  QL  E+  NP      K+IV GDGR     D V  A  FK +  NG +STVG+ F NT LL  IA     R+F ID+Y++   ++ DL  E+CG
Sbjct:   39 VERNGCNLNVCFALDGSASVTPLDYEMQKDFVQLMSAVLDFEVENSSFSAVQYGDQVSPISPLTQSIDDFNLKVHASNISAFQGSSIGKGITYCSNQLL-ELADNPV-----KIIVFGDGRETSKTDAVSIAASFKDFHPNGRLSTVGVGFPNTVLLKTIAEAGGGRLFEIDEYIDALDLVVDLFLEVCG 222          
BLAST of Gvermi7673.t1 vs. uniprot
Match: A0A2V3ITK9_9FLOR (VWFA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITK9_9FLOR)

HSP 1 Score: 124 bits (310), Expect = 6.110e-31
Identity = 74/197 (37.56%), Postives = 117/197 (59.39%), Query Frame = 0
Query:   34 AVAEVERRGCSVNVCFAVDTSGSVSSTDFNLEKDFLIDITSIVGADPRSKFAAGQYGVRTYQISSLTSNVEEFNLRVRGAMYKNDRATSMGSGIVFCHRQLRREMRKNPYSNHANKLIVLGDGRNNM-----GGDPVRRARIFKYRTNGLISTVGISFQNTALLTEIAGSTDRVFAIDDYVELSFVIDDLVFEICGI 225
            A  EV   GC  NVCFA+D S +++ST+F L+KDF+  +  ++  D +S+FAA QYG+R+  IS LT + E+F L+V GA     R T +  GI  C +QL     K P+   AN +++LGDG +++     G +    A+ F +  +  IS V + F +T+ L  I G+ +RVF +D++ E+  V  +LV ++CG+
Sbjct:   72 AFGEVAGGGCDPNVCFALDGSRTINSTNFQLQKDFVKLVAGVISLDEQSQFAALQYGLRSDVISDLTLDAEDFLLKVDGAKKVGYRRTFVAFGIFGCIQQLL----KTPFE--ANHIVLLGDGDDDILVRHSGFNAESVAKRFLFSPHNAISAVAVGFSDTSHLERIVGNPNRVFEVDEWAEVVDVTAELVEDVCGL 262          
BLAST of Gvermi7673.t1 vs. uniprot
Match: A0A2V3IQR5_9FLOR (Collagen alpha-5(VI) chain n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQR5_9FLOR)

HSP 1 Score: 116 bits (291), Expect = 2.300e-28
Identity = 72/204 (35.29%), Postives = 109/204 (53.43%), Query Frame = 0
Query:   28 KSTVRAAVAEVERRGCSVNVCFAVDTSGSVSSTDFNLEKDFLIDITSIVGADPRSKFAAGQYGVRTYQISSLTSNVEEFNLRVRGAMYKNDRATSMGSGIVFCHRQLRREMRKNPYSNHANKLIVLGDGRNNMGG-----DPVRRARIFKYRTNGLISTVGISFQ-NTALLTEIAGSTDRVFAIDDYVELSFVIDDLVFEICGI 225
            ++ V+ A+   E+  C  N+CFAVD SGS+  T+F LEKDF   + ++V  D +++FAA QYG+R   IS LT + + F   V      N   T +  G+  C RQ                +++LGDGR+N        DPV  A+ F    N  IS VG+ F  +  +LT IAG  + VF +  ++E++ V+ +LV E+CG+
Sbjct:   42 EAEVQLALQIAEKTRCDPNICFAVDGSGSMDVTEFQLEKDFTNLVAAVVAYDEQARFAAVQYGLRPKFISRLTEDADAFLEAVHYTESLNAPRTFIAPGLAGCIRQFYY------LKGEPKHIVLLGDGRSNFDSKLPPLDPVSIAQAFLANPNNTISAVGVGFDADDTMLTNIAGGEENVFNVGQWLEVTTVLAELVGEVCGL 239          
BLAST of Gvermi7673.t1 vs. uniprot
Match: A0A6P4ZJS4_BRABE (uncharacterized protein LOC109474115 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4ZJS4_BRABE)

HSP 1 Score: 59.3 bits (142), Expect = 1.520e-6
Identity = 59/207 (28.50%), Postives = 94/207 (45.41%), Query Frame = 0
Query:   25 LMYKSTVRAAVAEVERRGCSVNVCFAVDTSGSVSSTDFNLEKDFLIDITSIVG-ADPRSKFAAGQYGVRTYQIS---SLTSNVEEFNLRVRGAMYKNDRATSMGSGIVFCHRQLRREMRKNPYSNHANKLIVLGDGRNNMGGDPVRRARIFKYRTNGLISTVGISFQ-NTALLTEIAGSTDRVFAIDDYVELSFVIDDLVFEICGIA 226
            L Y++ V A  A    +   V++ F +D S SV + +F L KDF     +    +D R++ A  QY   T Q+    +  S+V+  +  +    Y N  +T  G  I F  RQ           +  + ++V+ DG++    D V  +          I  VG+      A L EIAG TDRV  ++D+V+L+   D +   ICG+A
Sbjct:  138 LRYETIVPATPAPECTQFGGVDLVFLLDGSASVGTANFELVKDFTQQTAAKFDISDDRTRVAVAQYS-STPQVEFNLNTNSDVDTLSNAIEQITYMNGDSTFTGFAIEFV-RQSAFSSFNGARDDKPDIMVVVTDGQST---DSVTSSAATAREQGVTIFAVGVGTSIGLAELEEIAGYTDRVLQLNDFVQLAQSADTIQSTICGLA 339          
The following BLAST results are available for this feature:
BLAST of Gvermi7673.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3ISI4_9FLOR3.590e-7351.52VWFA domain-containing protein n=3 Tax=Gracilariop... [more]
A0A2V3IBU0_9FLOR2.580e-6752.09VWFA domain-containing protein n=1 Tax=Gracilariop... [more]
A0A2V3ID60_9FLOR1.060e-3440.53Cartilage matrix protein n=1 Tax=Gracilariopsis ch... [more]
A0A2V3ITK9_9FLOR6.110e-3137.56VWFA domain-containing protein n=1 Tax=Gracilariop... [more]
A0A2V3IQR5_9FLOR2.300e-2835.29Collagen alpha-5(VI) chain n=1 Tax=Gracilariopsis ... [more]
A0A6P4ZJS4_BRABE1.520e-628.50uncharacterized protein LOC109474115 n=1 Tax=Branc... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002035von Willebrand factor, type ASMARTSM00327VWA_4coord: 44..223
e-value: 2.6E-17
score: 73.5
IPR002035von Willebrand factor, type APFAMPF00092VWAcoord: 46..213
e-value: 2.4E-20
score: 73.5
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 46..218
score: 15.377521
IPR036465von Willebrand factor A-like domain superfamilyGENE3D3.40.50.410von Willebrand factor, type A domaincoord: 40..221
e-value: 1.4E-24
score: 88.9
IPR036465von Willebrand factor A-like domain superfamilySUPERFAMILY53300vWA-likecoord: 30..225
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..229
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availableCDDcd01450vWFA_subfamily_ECMcoord: 45..205
e-value: 3.82298E-17
score: 73.865

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:1796883..1797572 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7673.t1Gvermi7673.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_64 1796883..1797572 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi7673.t1 ID=Gvermi7673.t1|Name=Gvermi7673.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=230bp
MLALISAFALFFSLGCCMSHEDAKLMYKSTVRAAVAEVERRGCSVNVCFA
VDTSGSVSSTDFNLEKDFLIDITSIVGADPRSKFAAGQYGVRTYQISSLT
SNVEEFNLRVRGAMYKNDRATSMGSGIVFCHRQLRREMRKNPYSNHANKL
IVLGDGRNNMGGDPVRRARIFKYRTNGLISTVGISFQNTALLTEIAGSTD
RVFAIDDYVELSFVIDDLVFEICGIALEA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
IPR036465vWFA_dom_sf