Gvermi7661.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi7661.t1
Unique NameGvermi7661.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length194
Homology
BLAST of Gvermi7661.t1 vs. uniprot
Match: R7QJR5_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJR5_CHOCR)

HSP 1 Score: 102 bits (254), Expect = 7.310e-24
Identity = 50/87 (57.47%), Postives = 62/87 (71.26%), Query Frame = 0
Query:   66 PVKALEELDLSHLPDSHRERLHHMLREYTSMWDGSLGEINSTEHRIDLLPHACPVAQPPYRAGPKAREEEQFHVDKMLRAGVIEFAQ 152
            P   +EELDLSH+PD  RER   M ++Y+ +WDG+LGEI +T HRI+L+P   P+A+ PYRAGPK  E E   V KML AGVIE AQ
Sbjct:   33 PPPDVEELDLSHVPDRLRERFRRMSKKYSRVWDGTLGEIYTTVHRIELIPETRPIAKAPYRAGPKVCEIEDAEVQKMLEAGVIEPAQ 119          
BLAST of Gvermi7661.t1 vs. uniprot
Match: UPI001E1D3E38 (uncharacterized protein LOC123544752 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D3E38)

HSP 1 Score: 101 bits (251), Expect = 1.760e-21
Identity = 53/107 (49.53%), Postives = 70/107 (65.42%), Query Frame = 0
Query:   58 DTSYDKLGPVKALEELDLSHLPDSHRERLHHMLREYTSMWDGSLGEINSTEHRIDLLPHACPVAQPPYRAGPKAREEEQFHVDKMLRAGVIEFAQSLWATPVVLALK 164
            +T      P    +E+DL  L    +E++  +L  Y+ MWDGSLGEI +T+HRI L+P + PV   PYRAGPKARE E+  V++ML+A VIE A S WA+PVVL  K
Sbjct:  300 ETKVQDEAPKSWRDEVDLPTLQGEWKEKVMTLLERYSHMWDGSLGEIKATKHRIQLIPGSKPVHSHPYRAGPKAREMERQEVERMLKADVIEPACSEWASPVVLVPK 406          
BLAST of Gvermi7661.t1 vs. uniprot
Match: R7QTY1_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QTY1_CHOCR)

HSP 1 Score: 97.8 bits (242), Expect = 1.960e-20
Identity = 46/66 (69.70%), Postives = 53/66 (80.30%), Query Frame = 0
Query:   96 MWDGSLGEINSTEHRIDLLPHACPVAQPPYRAGPKAREEEQFHVDKMLRAGVIEFAQSLWATPVVL 161
            MWDG+LGEIN+T HRI+L+P   P+AQ PYRAGPKARE E   V KML AGVIE AQS WA+PV+L
Sbjct:    1 MWDGTLGEINTTVHRIELIPETRPIAQDPYRAGPKAREVEDAEVQKMLEAGVIEPAQSEWASPVLL 66          
BLAST of Gvermi7661.t1 vs. uniprot
Match: UPI001E1DE006 (uncharacterized protein LOC123544159 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DE006)

HSP 1 Score: 79.0 bits (193), Expect = 5.770e-14
Identity = 41/99 (41.41%), Postives = 57/99 (57.58%), Query Frame = 0
Query:   66 PVKALEELDLSHLPDSHRERLHHMLREYTSMWDGSLGEINSTEHRIDLLPHACPVAQPPYRAGPKAREEEQFHVDKMLRAGVIEFAQSLWATPVVLALK 164
            P    +++ L HL    R+ +  ML  +  MWDG LG + +T HRI++   A PV   PYRAG +AR  E+  +D+ML   VIE A   WA+P+VL  K
Sbjct:  217 PTSWKDDVRLDHLELEERQAVLRMLEPHHKMWDGHLGTVAATSHRIEVTAGAKPVHCQPYRAGSRARSAEKEEIDRMLAEHVIEPATCEWASPIVLVPK 315          
BLAST of Gvermi7661.t1 vs. uniprot
Match: UPI001E1DEA69 (uncharacterized protein LOC123544193 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DEA69)

HSP 1 Score: 79.0 bits (193), Expect = 9.690e-14
Identity = 41/99 (41.41%), Postives = 57/99 (57.58%), Query Frame = 0
Query:   66 PVKALEELDLSHLPDSHRERLHHMLREYTSMWDGSLGEINSTEHRIDLLPHACPVAQPPYRAGPKAREEEQFHVDKMLRAGVIEFAQSLWATPVVLALK 164
            P    +++ L HL    R+ +  ML  +  MWDG LG + +T HRI++   A PV   PYRAG +AR  E+  +D+ML   VIE A   WA+P+VL  K
Sbjct:  319 PTSWKDDVRLDHLELEERQAVLRMLEPHHKMWDGHLGTVAATSHRIEVTAGAKPVHCQPYRAGSRARSAEKEEIDRMLAEHVIEPATCEWASPIVLVPK 417          
The following BLAST results are available for this feature:
BLAST of Gvermi7661.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
R7QJR5_CHOCR7.310e-2457.47Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
UPI001E1D3E381.760e-2149.53uncharacterized protein LOC123544752 n=1 Tax=Merce... [more]
R7QTY1_CHOCR1.960e-2069.70Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
UPI001E1DE0065.770e-1441.41uncharacterized protein LOC123544159 n=1 Tax=Merce... [more]
UPI001E1DEA699.690e-1441.41uncharacterized protein LOC123544193 n=1 Tax=Merce... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.10.10HIV Type 1 Reverse Transcriptase, subunit A, domain 1coord: 102..176
e-value: 4.1E-11
score: 45.0
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 91..166

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:1492840..1493421 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7661.t1Gvermi7661.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_64 1492840..1493421 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi7661.t1 ID=Gvermi7661.t1|Name=Gvermi7661.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=194bp
MFTPHPLAMLPTKLTSADVLGLVQSSDETASAEGFLTEEVDSSALAIDPE
SGAEEHTDTSYDKLGPVKALEELDLSHLPDSHRERLHHMLREYTSMWDGS
LGEINSTEHRIDLLPHACPVAQPPYRAGPKAREEEQFHVDKMLRAGVIEF
AQSLWATPVVLALKGGRDLAVLCGLPSTERRYGPRHLPHTPYG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR043502DNA/RNA_pol_sf