Gvermi7660.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi7660.t1
Unique NameGvermi7660.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length192
Homology
BLAST of Gvermi7660.t1 vs. uniprot
Match: R7QRD9_CHOCR (Retrotransposon protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRD9_CHOCR)

HSP 1 Score: 225 bits (573), Expect = 1.500e-70
Identity = 103/189 (54.50%), Postives = 141/189 (74.60%), Query Frame = 0
Query:    3 FVCHSGSYCFKRMPFGLTNAPDTFQRAIDILLNRFKWRTCLVYLDDIIFFSSNLDDHLTHVKEVMTVLRNAGISLKLRKCEFFTDTIKHLGHIIRLGRLMIEQARVKFLTEANEPRTETELRSFLGLVNVYRRFIPRFSYMAAPLNAVLRKGQPPKLEPFNAVQTEAFQSLIQAVTTAPILSLPKSGLP 191
            F CH G Y F+RMPFGL NAP TFQR +DILL+ ++W++CLVY DDII FS+ +++H THV++V+ VL++AG+SLKL KC FF +++ +LGH+IR G L + +     + +A E  T+TELRSFLG+ NVYRRF+P F+  AAPLN +L KG+P +LE F+  Q++AF  L  AV + PIL LP+S LP
Sbjct:   64 FTCHEGCYQFRRMPFGLCNAPATFQRTLDILLSGYRWKSCLVYFDDIIIFSNFIEEHSTHVQQVLKVLQDAGLSLKLEKCNFFAESVDYLGHVIRPGLLAVAEKNTDAIKKAQERTTQTELRSFLGMCNVYRRFVPNFARTAAPLNVLLAKGKPFQLEKFSVEQSKAFGLLKTAVISPPILKLPRSNLP 252          
BLAST of Gvermi7660.t1 vs. uniprot
Match: UPI001E1E1407 (uncharacterized protein LOC123543642 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E1407)

HSP 1 Score: 203 bits (517), Expect = 2.890e-57
Identity = 96/186 (51.61%), Postives = 127/186 (68.28%), Query Frame = 0
Query:    3 FVCHSGSYCFKRMPFGLTNAPDTFQRAIDILLNRFKWRTCLVYLDDIIFFSSNLDDHLTHVKEVMTVLRNAGISLKLRKCEFFTDTIKHLGHIIRLGRLMIEQARVKFLTEANEPRTETELRSFLGLVNVYRRFIPRFSYMAAPLNAVLRKGQPPKLEPFNAVQTEAFQSLIQAVTTAPILSLPKS 188
            F  H G Y F RMPFGL NAP TFQR +DI L+   W+TCLVYLDDII FS    +H+ H+  V+  L  AG++L L+KC FF +T+ +LGH+IR G+L + +     L     P T+TELRSFLGL NVYRRF+  F+ +AAPLN +LRKG+ P+L P +A Q  AF++L  A+   PIL+LP++
Sbjct:   88 FTSHEGLYWFLRMPFGLRNAPATFQRFVDITLSGLTWKTCLVYLDDIIVFSKTPTEHMAHLDAVLHRLYRAGLTLNLKKCHFFKETVDYLGHVIRPGQLSVAKKNTAALKVTKHPTTQTELRSFLGLCNVYRRFVKGFAKIAAPLNLLLRKGETPQLGPLSAEQVSAFETLRDALLNPPILALPRT 273          
BLAST of Gvermi7660.t1 vs. uniprot
Match: R7QFB9_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFB9_CHOCR)

HSP 1 Score: 185 bits (469), Expect = 4.770e-51
Identity = 89/177 (50.28%), Postives = 123/177 (69.49%), Query Frame = 0
Query:   15 MPFGLTNAPDTFQRAIDILLNRFKWRTCLVYLDDIIFFSSNLDDHLTHVKEVMTVLRNAGISLKLRKCEFFTDTIKHLGHIIRLGRLMIEQARVKFLTEANEPRTETELRSFLGLVNVYRRFIPRFSYMAAPLNAVLRKGQPPKLEPFNAVQTEAFQSLIQAVTTAPILSLPKSGLP 191
            MP GLTNAP TFQRA+DILL+ F+W+ CLVY   II FS + ++H+ HV E+++VL  A + LKLRKCEFF + IK+LG ++R G L ++ AR   L +   P+T+T+LRSFLGL NVYRRF+P ++ +  PLN +L+KGQ  +LE  +    + F  L  A+   P+L+LPK  LP
Sbjct:    1 MPLGLTNAPATFQRAMDILLSPFRWKCCLVY---IIIFSKSWEEHVVHVDEILSVLEKACVKLKLRKCEFFVEKIKYLGRVVRPGTLEVDAARTAALEQVRYPQTQTQLRSFLGLCNVYRRFVPHYAKIEHPLNQLLKKGQLLQLEGLDEPCEKDFHKLKDAILEPPVLALPKKDLP 174          
BLAST of Gvermi7660.t1 vs. uniprot
Match: A0A507C5M9_9FUNG (RNA-directed DNA polymerase n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507C5M9_9FUNG)

HSP 1 Score: 169 bits (427), Expect = 5.020e-45
Identity = 84/187 (44.92%), Postives = 122/187 (65.24%), Query Frame = 0
Query:    2 AFVCHSGSYCFKRMPFGLTNAPDTFQRAIDILLNRFKWRTCLVYLDDIIFFSSNLDDHLTHVKEVMTVLRNAGISLKLRKCEFFTDTIKHLGHIIRLGRLMIEQARVKFLTEANEPRTETELRSFLGLVNVYRRFIPRFSYMAAPLNAVLRKGQPPKLEPFNAVQTEAFQSLIQAVTTAPILSLPKS 188
            AFV H G Y F RMPFGLTNAP TFQR +D +L+  KW  CLVYLDDI+ FS+  DDHL  V++V+  L NAG+SLK  KC+FF   +++LGH++    +     +++ + E   P  +++ R+FLGL + YRRFIP  + +A PL  +++K    K E +   + +AF+ L   +TT P+L++PKS
Sbjct:  571 AFVTHDGLYEFIRMPFGLTNAPATFQRFMDTVLSGLKWHNCLVYLDDIVIFSNTFDDHLKDVEKVLNRLVNAGLSLKASKCDFFAAEVEYLGHVVSRHGIKPGPRKIQAVKEFKVPSNQSDTRTFLGLCSYYRRFIPNLAAVAHPLLQLIKKEA--KWE-WTIKEQKAFELLKDLLTTEPVLAMPKS 754          
BLAST of Gvermi7660.t1 vs. uniprot
Match: R7Q4V7_CHOCR (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4V7_CHOCR)

HSP 1 Score: 163 bits (412), Expect = 9.670e-44
Identity = 79/177 (44.63%), Postives = 110/177 (62.15%), Query Frame = 0
Query:   15 MPFGLTNAPDTFQRAIDILLNRFKWRTCLVYLDDIIFFSSNLDDHLTHVKEVMTVLRNAGISLKLRKCEFFTDTIKHLGHIIRLGRLMIEQARVKFLTEANEPRTETELRSFLGLVNVYRRFIPRFSYMAAPLNAVLRKGQPPKLEPFNAVQTEAFQSLIQAVTTAPILSLPKSGLP 191
            MPFGLTN P  FQRA+DILL+ F+W+ CL                             AG+ LKLRKCEFF + IK+LGH++R G L ++ AR+  L +   P+T+T+LRSFLGL NVYR+F+P ++ +A PLN +L+KGQP ++E F+    ++F  L  A+   P+L+LPK  LP
Sbjct:    1 MPFGLTNTPAMFQRAMDILLSPFRWKCCL----------------------------KAGVKLKLRKCEFFVEKIKYLGHVVRPGTLEVDAARIAALEQVRYPQTQTQLRSFLGLCNVYRQFVPHYAKIAHPLNQLLKKGQPVRMEGFDEPCEKSFHKLKGAILAPPVLALPKKDLP 149          
BLAST of Gvermi7660.t1 vs. uniprot
Match: A0A164MIG6_9CRUS (RNA-directed DNA polymerase n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A164MIG6_9CRUS)

HSP 1 Score: 162 bits (409), Expect = 1.320e-42
Identity = 85/190 (44.74%), Postives = 117/190 (61.58%), Query Frame = 0
Query:    2 AFVCHSGSYCFKRMPFGLTNAPDTFQRAIDILLNRFKWRTCLVYLDDIIFFSSNLDDHLTHVKEVMTVLRNAGISLKLRKCEFFTDTIKHLGHIIRLGRLMIEQARVKFLTEANEPRTETELRSFLGLVNVYRRFIPRFSYMAAPLNAVLRKGQPPKLEPFNAVQTEAFQSLIQAVTTAPILSLPKSGLP 191
            AF+   G Y FK MPFGLTNAP TFQR +D+LL   KW TCLVYLDDI+ FS+++  HLT ++ V+  L  A + LKL KC F    +K LG+++    L  E  +VK +T    P +  E++SF+GL + YRRF+  FS +A PL ++ +KGQ      ++  Q  +FQ L  A+T+ PIL  P   LP
Sbjct: 1284 AFITADGLYQFKVMPFGLTNAPSTFQRMMDVLLAGLKWNTCLVYLDDIVIFSNSIPQHLTRLELVLQCLIKANLKLKLSKCTFVATCLKILGYVVSGSGLSPEPEKVKAVTAFPVPSSLKEVQSFIGLCSYYRRFVKNFSIIARPLTSLTKKGQRFL---WSDEQMTSFQQLKSALTSPPILGHPNYELP 1470          
BLAST of Gvermi7660.t1 vs. uniprot
Match: A0A507BVZ6_9FUNG (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507BVZ6_9FUNG)

HSP 1 Score: 160 bits (404), Expect = 1.800e-42
Identity = 84/190 (44.21%), Postives = 118/190 (62.11%), Query Frame = 0
Query:    2 AFVCHSGSYCFKRMPFGLTNAPDTFQRAIDILLNRFKWRTCLVYLDDIIFFSSNLDDHLTHVKEVMTVLRNAGISLKLRKCEFFTDTIKHLGHIIRLGRLMIEQARVKFLTEANEPRTETELRSFLGLVNVYRRFIPRFSYMAAPLNAVLRKGQPPKLEPFNAVQTEAFQSLIQAVTTAPILSLPKSGLP 191
            AFV H G Y F  MPFGLTNAP TFQR +D+ L   KW+ CLVYLDDII FS+  D HL  +++V+  L   G+SLK  KC F  + +++LGHI+    +     +V+ + E   P   + +RSFLGL + YRRFIP ++ +A+PL  +L       +  +   Q+ AF  L +A+ +APIL++PKSG P
Sbjct:  422 AFVTHEGLYEFLVMPFGLTNAPATFQRVMDMALVGLKWQCCLVYLDDIIVFSNTFDQHLQDIEKVLKRLLEQGLSLKASKCNFCAEEVEYLGHIVSRHGIRPGNRKVQAVQEFPIPENVSAVRSFLGLTSYYRRFIPNYTKIASPLLQLLPHDV---VWTWTDSQSHAFAVLKEALISAPILAMPKSGRP 608          
BLAST of Gvermi7660.t1 vs. uniprot
Match: R7QRS9_CHOCR (RT_RNaseH_2 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRS9_CHOCR)

HSP 1 Score: 149 bits (377), Expect = 2.140e-42
Identity = 67/132 (50.76%), Postives = 97/132 (73.48%), Query Frame = 0
Query:   60 LTHVKEVMTVLRNAGISLKLRKCEFFTDTIKHLGHIIRLGRLMIEQARVKFLTEANEPRTETELRSFLGLVNVYRRFIPRFSYMAAPLNAVLRKGQPPKLEPFNAVQTEAFQSLIQAVTTAPILSLPKSGLP 191
            + HV E+M+VL  AG+ LKLRKCEFF + IK+LGH++R G L ++ AR+  L +   P+T+T+LRSFLGL NVYRRF+P ++ +A PLN +L+KGQP +LE F+    +AF +L +A+   P+++LPK  LP
Sbjct:    1 MVHVDEIMSVLEKAGVKLKLRKCEFFVEKIKYLGHVVRPGTLEVDAARIAALEQVKYPQTQTQLRSFLGLCNVYRRFVPHYAKIAHPLNQLLKKGQPVQLEGFDEPCKKAFHNLKEAILAPPVVALPKKDLP 132          
BLAST of Gvermi7660.t1 vs. uniprot
Match: UPI00109BB58D (uncharacterized protein LOC110233154 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BB58D)

HSP 1 Score: 155 bits (393), Expect = 3.470e-42
Identity = 80/185 (43.24%), Postives = 119/185 (64.32%), Query Frame = 0
Query:    2 AFVCHSGSYCFKRMPFGLTNAPDTFQRAIDILLNRFKWRTCLVYLDDIIFFSSNLDDHLTHVKEVMTVLRNAGISLKLRKCEFFTDTIKHLGHIIRLGRLMIEQARVKFLTEANEPRTETELRSFLGLVNVYRRFIPRFSYMAAPLNAVLRKGQPPKLEPFNAVQTEAFQSLIQAVTTAPILSLP 186
            AFV H+G + FKR+PFGLTN+P TFQR +  +L   +++  L+Y+DDII FS ++++HLTH+++V   LR A + L   KC F    +++LGHI+    +  ++ +VK + +   P +   LRSFLGL N YRRF+  FS +A+PL  + +KG   K E     Q EAF  L +A+T+APIL+ P
Sbjct:  224 AFVTHNGLFEFKRLPFGLTNSPATFQRIMQYILRGLEYKYALIYIDDIIIFSKSVEEHLTHLEDVFERLRQANLKLNPNKCVFAKQRLEYLGHIVTPQGIYPDENKVKAVKDFPTPNSIKALRSFLGLSNYYRRFVKDFSKIASPLTQLTKKGA--KFEWTQPCQ-EAFDQLKRALTSAPILAYP 405          
BLAST of Gvermi7660.t1 vs. uniprot
Match: A0A0P5XPI7_9CRUS (Polyprotein of retroviral origin (Fragment) n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5XPI7_9CRUS)

HSP 1 Score: 154 bits (390), Expect = 4.490e-42
Identity = 77/185 (41.62%), Postives = 114/185 (61.62%), Query Frame = 0
Query:    2 AFVCHSGSYCFKRMPFGLTNAPDTFQRAIDILLNRFKWRTCLVYLDDIIFFSSNLDDHLTHVKEVMTVLRNAGISLKLRKCEFFTDTIKHLGHIIRLGRLMIEQARVKFLTEANEPRTETELRSFLGLVNVYRRFIPRFSYMAAPLNAVLRKGQPPKLEPFNAVQTEAFQSLIQAVTTAPILSLP 186
            AF+C  G Y F RMPFGLTNAP TFQRA++ +L    ++  LVYLDDII FS+++ DH+TH++ V  +L+ AG+ LK +KCEFF + + +LG+I+    +     ++  + +   P+   EL SFLGL + YR+FI  F+  A PL A+ RK    K   +   Q +AF+ +   + T P+L  P
Sbjct:  209 AFICEFGQYEFNRMPFGLTNAPSTFQRAMNNILKTVLYKFALVYLDDIIVFSNSITDHVTHLEAVFRLLKQAGLKLKRKKCEFFKEKLDYLGYIVSGKGITPSTKKLDAIVKYPAPKNVKELSSFLGLASYYRKFIRAFADKAHPLTALTRKSAEWK---WGEEQRDAFECIKNCLITRPVLGYP 390          
The following BLAST results are available for this feature:
BLAST of Gvermi7660.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QRD9_CHOCR1.500e-7054.50Retrotransposon protein n=1 Tax=Chondrus crispus T... [more]
UPI001E1E14072.890e-5751.61uncharacterized protein LOC123543642 n=1 Tax=Merce... [more]
R7QFB9_CHOCR4.770e-5150.28Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A507C5M9_9FUNG5.020e-4544.92RNA-directed DNA polymerase n=1 Tax=Synchytrium mi... [more]
R7Q4V7_CHOCR9.670e-4444.63Integrase catalytic domain-containing protein n=1 ... [more]
A0A164MIG6_9CRUS1.320e-4244.74RNA-directed DNA polymerase n=1 Tax=Daphnia magna ... [more]
A0A507BVZ6_9FUNG1.800e-4244.21Reverse transcriptase domain-containing protein (F... [more]
R7QRS9_CHOCR2.140e-4250.76RT_RNaseH_2 domain-containing protein n=1 Tax=Chon... [more]
UPI00109BB58D3.470e-4243.24uncharacterized protein LOC110233154 n=1 Tax=Exaip... [more]
A0A0P5XPI7_9CRUS4.490e-4241.62Polyprotein of retroviral origin (Fragment) n=1 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 22..96
e-value: 1.4E-31
score: 111.4
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 105..189
e-value: 8.2E-20
score: 72.6
NoneNo IPR availableGENE3D3.10.10.10HIV Type 1 Reverse Transcriptase, subunit A, domain 1coord: 2..21
e-value: 1.4E-31
score: 111.4
NoneNo IPR availablePANTHERPTHR24559:SF363SUBFAMILY NOT NAMEDcoord: 2..186
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 2..186
NoneNo IPR availableCDDcd01647RT_LTRcoord: 2..96
e-value: 1.57713E-40
score: 133.49
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 7..96
e-value: 2.2E-19
score: 69.9
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 1..96
score: 9.85957
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 2..190

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:1492167..1492742 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7660.t1Gvermi7660.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_64 1492167..1492742 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi7660.t1 ID=Gvermi7660.t1|Name=Gvermi7660.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=192bp
MAFVCHSGSYCFKRMPFGLTNAPDTFQRAIDILLNRFKWRTCLVYLDDII
FFSSNLDDHLTHVKEVMTVLRNAGISLKLRKCEFFTDTIKHLGHIIRLGR
LMIEQARVKFLTEANEPRTETELRSFLGLVNVYRRFIPRFSYMAAPLNAV
LRKGQPPKLEPFNAVQTEAFQSLIQAVTTAPILSLPKSGLP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR043128Rev_trsase/Diguanyl_cyclase
IPR000477RT_dom
IPR043502DNA/RNA_pol_sf