Gvermi7096.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi7096.t1
Unique NameGvermi7096.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length264
Homology
BLAST of Gvermi7096.t1 vs. uniprot
Match: A0A2V3INK8_9FLOR (30S ribosomal protein S4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INK8_9FLOR)

HSP 1 Score: 400 bits (1028), Expect = 5.930e-139
Identity = 202/268 (75.37%), Postives = 226/268 (84.33%), Query Frame = 0
Query:    1 MPVNYQLKNLRRLFGEASFLRPTT-DSPATPLGKVARVSRRT----GSDPPQKRTKAAGGMPRAFFSEQPPRSVRNKAVSSQLYSIHLIEKQKMRLYYGAIRDSQFKKYVQKAAQTRHNVDAHLVRLLELRLDTFLYRTSFVKTPAQARQWIYHGHVLVNGDVVDVKSFQMRPGDVLTIAEHHFERALQACTENAQMRKGFGCGASWIVSRADVAGMLPWMEIDRVGLSAVLVREPTDEEARSMTRAALFPFIRDANLNPLAAMRAYR 263
            MPVNYQLKNLRRLFGE +FLRP T +      GK+ARV+RR      +D   KRTK  GG+PRAFF EQPPRSVRNKAV++QL +IHL EKQKMRLYYGA+RD++FKKYVQ+A  TR+N DAHL+RLLELRLDTFLYRT FVKTP+QARQWIYH HVLVN DVV VKS++MRPGDV++IA HH E A  A T+ AQMR+ FGCGASWIVSR D AGMLPWMEIDRVGLSA+LVR PTDEEARSMTRAALFP+IRDANLNP AAMRAYR
Sbjct:    1 MPVNYQLKNLRRLFGEGTFLRPATGEGLPQATGKIARVTRRLVAAKDADSQPKRTKLLGGVPRAFFGEQPPRSVRNKAVAAQLNTIHLFEKQKMRLYYGAMRDAKFKKYVQEATCTRYNTDAHLIRLLELRLDTFLYRTGFVKTPSQARQWIYHEHVLVNNDVVSVKSYRMRPGDVMSIASHHVENAFLAATDCAQMRQSFGCGASWIVSRNDPAGMLPWMEIDRVGLSAILVRHPTDEEARSMTRAALFPYIRDANLNPHAAMRAYR 268          
BLAST of Gvermi7096.t1 vs. uniprot
Match: R7QFH5_CHOCR (S4 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFH5_CHOCR)

HSP 1 Score: 319 bits (818), Expect = 6.590e-107
Identity = 166/277 (59.93%), Postives = 200/277 (72.20%), Query Frame = 0
Query:    1 MPVNYQLKNLRRLFGEASFLRPTTDSPATPLGKVARVSRR--------------TGSDPPQKRTKAAGGMPRAFFSEQPPRSVRNKAVSSQLYSIHLIEKQKMRLYYGAIRDSQFKKYVQKAAQTRHNVDAHLVRLLELRLDTFLYRTSFVKTPAQARQWIYHGHVLVNGDVVDVKSFQMRPGDVLTIAEHHFERALQACTENAQMRKGFGCGASWIVSRADVAGMLPWMEIDRVGLSAVLVREPTDEEARSMTRAALFPFIRDANLNPLAAMRAYR 263
            MPV+Y+L+NLRRLFG A+FLR   D  +   GK A   RR               GS   ++RTK  GG+PRAFFSEQPPR VRNK+   QL++ HL EKQKM+LYYGA+ D +FK+YV +A   R N DA L+RLLELRLDTFLYRT  VKTP Q RQWI H  +LVNG  V++K  ++RPGDV+++ + H E AL+A  E A++R   G GASWI+S  D AGMLPWMEIDR GL+AVLVREPTD+EAR+M RAALFP+IRDA LNP AAMRAYR
Sbjct:    1 MPVDYKLRNLRRLFGNANFLRVNADGGSA--GKHASGRRRGEATGAAASAEGKEDGSGKRERRTKVPGGIPRAFFSEQPPRPVRNKSAGGQLFTTHLFEKQKMKLYYGAMGDKKFKRYVDEARNCRRNTDAMLLRLLELRLDTFLYRTGLVKTPMQGRQWINHAQILVNGRPVNMKGNRLRPGDVVSVRDRHQEHALKASREAAELRAKLGLGASWILSDPDPAGMLPWMEIDRSGLAAVLVREPTDDEARAMARAALFPYIRDAKLNPHAAMRAYR 275          
BLAST of Gvermi7096.t1 vs. uniprot
Match: A0A7S1XDQ9_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XDQ9_9RHOD)

HSP 1 Score: 167 bits (423), Expect = 7.350e-48
Identity = 90/206 (43.69%), Postives = 128/206 (62.14%), Query Frame = 0
Query:   60 FFSEQ--PPRSVRNKAVSSQLYSIHLIEKQKMRLYYGAIRDSQFKKYVQKAAQTRHNVDAHLVRLLELRLDTFLYRTSFVKTPAQARQWIYHGHVLVNGDVVDVKSFQMRPGDVLTIAEHHFERALQACTENAQMRKGFGCGASWIVSRADVAGMLPWMEIDRVGLSAVLVREPTDEEARSMTRAALFPFIRDANLNPLAAMRAYR 263
            FF +   PPR    K  S   Y+  L+EKQKMR+YYG ++D  FK+YV++A ++R N   +L+  LE R+DT LYR+ FV T  Q +QWI HGHVLVNG  +D K+  MRPG+++ I      +A       AQ+R   G  A+W V +     MLP +E++R  +   ++R+PT EE  ++TRA +FP ++DANLNP  A+R YR
Sbjct:   21 FFQKPGVPPRPTAGKVASGVYYAKALLEKQKMRIYYGNMKDRVFKRYVEEAKRSRGNPVDYLLSRLESRVDTTLYRSGFVTTMQQGQQWISHGHVLVNGRTMDRKNGAMRPGNMIQIDPSFLAQAAMQAKMAAQIRAKAGGSAAWGVGQD---AMLPHLEVNRRTMCIAVIRDPTFEELMALTRAPMFPLVKDANLNPQWALRYYR 223          
BLAST of Gvermi7096.t1 vs. uniprot
Match: A0A5J4YYB0_PORPP (30S ribosomal protein S4 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YYB0_PORPP)

HSP 1 Score: 150 bits (379), Expect = 7.850e-41
Identity = 104/269 (38.66%), Postives = 142/269 (52.79%), Query Frame = 0
Query:    1 MPVNYQLKNLRRLF-----GEASFLRPTTDSPATPLGKVARVSRRTGSDPPQKRTKAAGGMPRAFFSEQPPRSVRNKAVSSQLYSIHLIEKQKMRLYYGAIRDSQFKKYVQKAAQTRH-NVDAHLVRLLELRLDTFLYRTSFVKTPAQARQWIYHGHVLVNGDVVDVKSFQMRPGDVLTIAEHHFERALQACTENAQMRKGFGCGASWIVSRADVAGMLPWMEIDRVGLSAVLVREPTDEEARSMTRAALFPFIRDANLNPLAAMRAYR 263
            M  +  LK ++RLF      EA  L    D+        AR  R   ++ PQK  +    M     +  P +    K+ S    +  LIEKQKMR YYG +RD +FK+ V++A ++   N    L+R LELRLDT LYRT  V +  Q+++ +  GHVLVNG      + ++R GDV  I             + A  R   G G SW+  R    GM+ ++E++R GLSAVLVREP  EE   +TRAA FP++RDANLNP  AM  Y+
Sbjct:    1 MARSVSLKRVQRLFVKEIESEARVLESYADA-----DNSARRPRWNLAEKPQKVQEMHAYM---VTNNAPRQGPNGKSASGMFGTQALIEKQKMRTYYGNMRDFKFKRLVRQARESGGTNPSEFLMRRLELRLDTMLYRTCMVWSMRQSQKLVKDGHVLVNGKRCTHSNRELRTGDVFAIHPSMIGTVAAIAIKVASRRMVMGLGQSWV--RNSPLGMVSYLEVNREGLSAVLVREPRAEELGVLTRAAFFPYLRDANLNPQRAMAYYK 259          
BLAST of Gvermi7096.t1 vs. uniprot
Match: A0A7C2V4P2_9AQUI (30S ribosomal protein S4 n=3 Tax=Aquificae TaxID=200783 RepID=A0A7C2V4P2_9AQUI)

HSP 1 Score: 114 bits (284), Expect = 2.670e-27
Identity = 57/155 (36.77%), Postives = 87/155 (56.13%), Query Frame = 0
Query:   79 YSIHLIEKQKMRLYYGAIRDSQFKKYVQKAAQTRHNVDAHLVRLLELRLDTFLYRTSFVKTPAQARQWIYHGHVLVNGDVVDVKSFQMRPGDVLTIAEHHFERALQACTENAQMRKGFGCGASWIVSRADVAGMLPWMEIDRVGLSAVLVREPTD 233
            Y + L+EKQK++L YG +R+ QFK+Y  +A++++ N    L++LLE RLD  +YR  F  T  QARQW+ HGH LVNG  VD+ S+++ PGD++ +      R +    EN Q              R D   + PW+E+D+      ++  P D
Sbjct:   52 YGLRLMEKQKLKLLYGGLREKQFKRYFDEASRSKGNTGQVLLQLLERRLDNVVYRLGFASTRRQARQWVAHGHFLVNGKKVDIPSYRVEPGDIIEVRPE--SRDIPQLLENIQ--------------RIDPRSIPPWLELDKDNFRGKVLDLPKD 190          
BLAST of Gvermi7096.t1 vs. uniprot
Match: A0A7C7KVU3_9BACT (30S ribosomal protein S4 n=1 Tax=Aquificae bacterium TaxID=2202151 RepID=A0A7C7KVU3_9BACT)

HSP 1 Score: 108 bits (270), Expect = 3.150e-25
Identity = 61/157 (38.85%), Postives = 90/157 (57.32%), Query Frame = 0
Query:   79 YSIHLIEKQKMRLYYGAIRDSQFKKYVQKAAQTRHNVDAHLVRLLELRLDTFLYRTSFVKTPAQARQWIYHGHVLVNGDVVDVKSFQMRPGDVLTIAEHHFERALQACTENAQMRKGFGCGASWIVSRADVAGMLPWMEIDRVGLSAVLVREPTDEE 235
            Y+  L+EKQK++ YYG +R+ QF +Y +KA + +     +L++LLE RLD  +YR  F  +    RQ + HGHVLVNG  VD  S+Q++PGDV+TI +           E   ++K      +W    +D  G+  W+E+DR    AV+  EPT EE
Sbjct:   54 YARQLMEKQKVKFYYG-VREEQFVRYFEKATRMKGRTGDNLLKLLESRLDNVVYRAGFAVSHRHGRQLVVHGHVLVNGKKVDRPSYQVKPGDVITIKDK--------TKEVPDVKK------AWF-ELSDKRGVPSWIEVDRENFKAVVKSEPTREE 194          
BLAST of Gvermi7096.t1 vs. uniprot
Match: A0A6C1BRQ7_9AQUI (30S ribosomal protein S4 n=1 Tax=Hydrogenobacter sp. T-8 TaxID=1632019 RepID=A0A6C1BRQ7_9AQUI)

HSP 1 Score: 107 bits (268), Expect = 6.050e-25
Identity = 64/203 (31.53%), Postives = 101/203 (49.75%), Query Frame = 0
Query:   31 LGKVARVSRRTGSDPPQKRTKAAGGMPRAFFSEQPPRSVRNKAVSSQLYSIHLIEKQKMRLYYGAIRDSQFKKYVQKAAQTRHNVDAHLVRLLELRLDTFLYRTSFVKTPAQARQWIYHGHVLVNGDVVDVKSFQMRPGDVLTIAEHHFERALQACTENAQMRKGFGCGASWIVSRADVAGMLPWMEIDRVGLSAVLVREPTD 233
            +G   R+ R+ G     K++ A   + R  F       V+ +      Y I L+EKQK++  YG +R+ QFK+Y  +A++++ N    L++LLE RLD  +YR  F  T  QARQWI HGH LVNG  VD+ S+++  GD++ +      R +    EN +                D   + PW+E+D+      ++  P D
Sbjct:    5 IGPQVRIDRKLGVVVSGKKS-APKILARRNFPPGQHGRVKGRRKKLTEYGIRLMEKQKLKFLYGGLREKQFKRYFDEASRSKGNTGQVLLQLLERRLDNVVYRLGFASTRRQARQWIVHGHFLVNGRKVDIPSYRVEVGDIIELKPS--SRDIPQVLENLE--------------NTDPRSVPPWLELDKDNYRGKVIDLPKD 190          
BLAST of Gvermi7096.t1 vs. uniprot
Match: A0A1M6RZE7_9AQUI (30S ribosomal protein S4 n=1 Tax=Thermocrinis minervae TaxID=381751 RepID=A0A1M6RZE7_9AQUI)

HSP 1 Score: 106 bits (264), Expect = 2.340e-24
Identity = 54/155 (34.84%), Postives = 84/155 (54.19%), Query Frame = 0
Query:   79 YSIHLIEKQKMRLYYGAIRDSQFKKYVQKAAQTRHNVDAHLVRLLELRLDTFLYRTSFVKTPAQARQWIYHGHVLVNGDVVDVKSFQMRPGDVLTIAEHHFERALQACTENAQMRKGFGCGASWIVSRADVAGMLPWMEIDRVGLSAVLVREPTD 233
            Y + L+EKQK++  YG +R+ QFK+Y ++A++ + N    L++LLE RLD  +YR  F  T  QARQWI HGH LVNG  V++ S+++  GDV+ +      R +    EN +                D   + PW+E+D+      ++  P D
Sbjct:   52 YGLRLMEKQKLKFLYGGLREKQFKRYFEEASRAKGNTGQVLLQLLERRLDNVVYRLGFASTRRQARQWIVHGHFLVNGKKVNIPSYRVEVGDVIEVKPS--SRDIPQLLENLE--------------NIDPRSIPPWLELDKENFRGKVIDLPKD 190          
BLAST of Gvermi7096.t1 vs. uniprot
Match: D3SQD9_THEAH (30S ribosomal protein S4 n=6 Tax=Thermocrinis TaxID=75905 RepID=D3SQD9_THEAH)

HSP 1 Score: 105 bits (261), Expect = 6.440e-24
Identity = 66/203 (32.51%), Postives = 102/203 (50.25%), Query Frame = 0
Query:   31 LGKVARVSRRTGSDPPQKRTKAAGGMPRAFFSEQPPRSVRNKAVSSQLYSIHLIEKQKMRLYYGAIRDSQFKKYVQKAAQTRHNVDAHLVRLLELRLDTFLYRTSFVKTPAQARQWIYHGHVLVNGDVVDVKSFQMRPGDVLTIAEHHFERALQACTENAQMRKGFGCGASWIVSRADVAGMLPWMEIDRVGLSAVLVREPTD 233
            +G  +R+ RR G     +++ A     R F   Q  R V+ +      Y I L+EKQK++  YG IR+ QFKKY   A++++ N    L++LLE RLD  +YR     T  QARQ++ HGH+LVNG  V++ S+ + PGDV+ +      R +    EN +                D   + PW+E+D+      ++  P D
Sbjct:    5 IGPWSRIDRRFGVVVSGRKSAARILAKRNFPPGQHGR-VKGRRRKLTEYGIRLMEKQKLKFLYGGIREKQFKKYFDMASKSKGNTGQVLLQLLERRLDNVVYRLGIACTRRQARQFVAHGHILVNGKKVNIPSYLVEPGDVIEVKPS--SRDIPQIIENLE--------------NMDPRSVPPWLELDKENFRGKVLDYPKD 190          
BLAST of Gvermi7096.t1 vs. uniprot
Match: A0A1D7XM31_9CLOT (30S ribosomal protein S4 n=1 Tax=Clostridium taeniosporum TaxID=394958 RepID=A0A1D7XM31_9CLOT)

HSP 1 Score: 102 bits (255), Expect = 3.730e-23
Identity = 59/168 (35.12%), Postives = 90/168 (53.57%), Query Frame = 0
Query:   68 SVRNKAVSSQLYSIHLIEKQKMRLYYGAIRDSQFKKYVQKAAQTRHNVDAHLVRLLELRLDTFLYRTSFVKTPAQARQWIYHGHVLVNGDVVDVKSFQMRPGDVLTIAEHHFERALQACTENAQMRKGFGCGASWIVSRADVAGMLPWMEIDRVGLSAVLVREPTDEE 235
            S RN A     Y I L+EKQ++R YYG + + QF  YV+KA + +      LV+LLE RLD  +YR  F  + AQARQ + HGH+LVN + VD+ SF ++ GD++++ EH          +N   ++ F          + +  + P++  +    S VL+R P   E
Sbjct:   33 SARN-AKKLSAYGIQLLEKQRLRAYYG-VMEKQFSNYVKKALKDKEQTGYALVKLLECRLDNLVYRLGFATSVAQARQMVVHGHILVNDNKVDIPSFNVKIGDIISLKEHS--------QKNKLFKENF---------LSQIHNVYPYLNKNEDNFSGVLMRYPERSE 181          
The following BLAST results are available for this feature:
BLAST of Gvermi7096.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3INK8_9FLOR5.930e-13975.3730S ribosomal protein S4 n=1 Tax=Gracilariopsis ch... [more]
R7QFH5_CHOCR6.590e-10759.93S4 domain-containing protein n=1 Tax=Chondrus cris... [more]
A0A7S1XDQ9_9RHOD7.350e-4843.69Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A5J4YYB0_PORPP7.850e-4138.6630S ribosomal protein S4 n=1 Tax=Porphyridium purp... [more]
A0A7C2V4P2_9AQUI2.670e-2736.7730S ribosomal protein S4 n=3 Tax=Aquificae TaxID=2... [more]
A0A7C7KVU3_9BACT3.150e-2538.8530S ribosomal protein S4 n=1 Tax=Aquificae bacteri... [more]
A0A6C1BRQ7_9AQUI6.050e-2531.5330S ribosomal protein S4 n=1 Tax=Hydrogenobacter s... [more]
A0A1M6RZE7_9AQUI2.340e-2434.8430S ribosomal protein S4 n=1 Tax=Thermocrinis mine... [more]
D3SQD9_THEAH6.440e-2432.5130S ribosomal protein S4 n=6 Tax=Thermocrinis TaxI... [more]
A0A1D7XM31_9CLOT3.730e-2335.1230S ribosomal protein S4 n=1 Tax=Clostridium taeni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002942RNA-binding S4 domainSMARTSM00363s4_6coord: 125..185
e-value: 2.7E-10
score: 50.2
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 126..172
e-value: 1.7E-14
score: 53.2
IPR002942RNA-binding S4 domainCDDcd00165S4coord: 126..183
e-value: 1.90083E-15
score: 67.2746
IPR001912Ribosomal protein S4/S9, N-terminalSMARTSM01390Ribosomal_S4_2coord: 29..124
e-value: 0.0017
score: 26.2
IPR001912Ribosomal protein S4/S9, N-terminalPFAMPF00163Ribosomal_S4coord: 32..124
e-value: 2.0E-7
score: 31.8
NoneNo IPR availableGENE3D1.10.1050.10Ribosomal Protein S4 Delta 41; Chain A, domain 1coord: 33..123
e-value: 7.1E-35
score: 122.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..58
NoneNo IPR availablePROSITEPS50889S4coord: 125..188
score: 14.110996
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 33..231
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 124..236
e-value: 7.1E-35
score: 122.5
IPR005709Ribosomal protein S4, bacterial-typePANTHERPTHR11831:SF437S RIBOSOMAL PROTEIN NAM9, MITOCHONDRIALcoord: 70..232
IPR022801Ribosomal protein S4/S9PANTHERPTHR1183130S 40S RIBOSOMAL PROTEINcoord: 70..232

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1633359..1634150 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7096.t1Gvermi7096.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24229 1633359..1634150 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi7096.t1 ID=Gvermi7096.t1|Name=Gvermi7096.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=264bp
MPVNYQLKNLRRLFGEASFLRPTTDSPATPLGKVARVSRRTGSDPPQKRT
KAAGGMPRAFFSEQPPRSVRNKAVSSQLYSIHLIEKQKMRLYYGAIRDSQ
FKKYVQKAAQTRHNVDAHLVRLLELRLDTFLYRTSFVKTPAQARQWIYHG
HVLVNGDVVDVKSFQMRPGDVLTIAEHHFERALQACTENAQMRKGFGCGA
SWIVSRADVAGMLPWMEIDRVGLSAVLVREPTDEEARSMTRAALFPFIRD
ANLNPLAAMRAYR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002942S4_RNA-bd
IPR001912Ribosomal_S4/S9_N
IPR036986S4_RNA-bd_sf
IPR005709Ribosomal_S4_bac-type
IPR022801Ribosomal_S4/S9