Gvermi7094.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi7094.t1
Unique NameGvermi7094.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length173
Homology
BLAST of Gvermi7094.t1 vs. uniprot
Match: A0A1R3IK88_COCAP (Zinc finger, RING-type n=2 Tax=Corchorus TaxID=93758 RepID=A0A1R3IK88_COCAP)

HSP 1 Score: 63.2 bits (152), Expect = 3.750e-9
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 0
Query:  105 PVVG-DTAGNGGGHVR-TQNKCTICLDMVNCGEKVRYLKNCSHSFHAKCIEKWICYANRCPLC 165
            PV+  D++G+GGG    T   C ICL     G+KVR L NCSH FHAKCI+ W+   + CPLC
Sbjct:  100 PVIAYDSSGSGGGLDNLTGTDCPICLGEFAQGDKVRILPNCSHGFHAKCIDIWLLSNSSCPLC 162          
BLAST of Gvermi7094.t1 vs. uniprot
Match: UPI0009E2290C (RING-H2 finger protein ATL8-like n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E2290C)

HSP 1 Score: 62.8 bits (151), Expect = 4.030e-9
Identity = 25/57 (43.86%), Postives = 38/57 (66.67%), Query Frame = 0
Query:  117 HVRTQN--KCTICLDMVNCGEKVRYLKNCSHSFHAKCIEKWICYANRCPLCCTPVVA 171
            H++ +   +C +CL  V  GEKVR+L +C H FHA CI++W+C    CP C +PV++
Sbjct:   62 HIKNEGIFECPVCLLSVEEGEKVRFLPDCGHGFHASCIDEWLCSRLTCPFCRSPVIS 118          
BLAST of Gvermi7094.t1 vs. uniprot
Match: A0A843WEL5_COLES (RING-type E3 ubiquitin transferase n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843WEL5_COLES)

HSP 1 Score: 60.1 bits (144), Expect = 4.910e-8
Identity = 28/64 (43.75%), Postives = 35/64 (54.69%), Query Frame = 0
Query:  108 GDTAGNGGGHVRTQNKCTICLDMVNCGEKVRYLKNCSHSFHAKCIEKWICYANRCPLCCTPVVA 171
            GD A  G      +++C +CL     GE VR L  C HSFHA CI+ W+C    CPLC   V+A
Sbjct:   87 GDAAAAGEKGGSDESQCAVCLSAFAEGEDVRRLPKCGHSFHAACIDAWLCARASCPLCRASVLA 150          
BLAST of Gvermi7094.t1 vs. uniprot
Match: UPI001920A64D (RING-H2 finger protein ATL39-like n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=UPI001920A64D)

HSP 1 Score: 59.7 bits (143), Expect = 4.980e-8
Identity = 25/56 (44.64%), Postives = 35/56 (62.50%), Query Frame = 0
Query:  111 AGNGGGH-VRTQNKCTICLDMVNCGEKVRYLKNCSHSFHAKCIEKWICYANRCPLC 165
            +GN G   +  + +C +CL +   G++VR L  C HSFHA CI+ W+CY   CPLC
Sbjct:   86 SGNMGSEDMSGEYECVVCLSVFEDGDEVRQLPRCKHSFHAPCIDMWLCYHYDCPLC 141          
BLAST of Gvermi7094.t1 vs. uniprot
Match: A0A1U7YUX1_NELNU (RING-type E3 ubiquitin transferase n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U7YUX1_NELNU)

HSP 1 Score: 61.2 bits (147), Expect = 5.280e-8
Identity = 26/67 (38.81%), Postives = 40/67 (59.70%), Query Frame = 0
Query:  105 PVVGDTAGNGGGHVRTQNKCTICLDMVNCGEKVRYLKNCSHSFHAKCIEKWICYANRCPLCCTPVVA 171
            PV+  ++   G  +  Q +C ICL  +  G+ VR+L NC H+FH +CI++W      CPLC +P+ A
Sbjct:   84 PVLTYSSKQSGSFLPDQTECAICLVQLEEGDIVRWLPNCRHAFHLRCIDQWFASHANCPLCRSPIAA 150          
BLAST of Gvermi7094.t1 vs. uniprot
Match: A0A2I0X6V8_9ASPA (RING-type E3 ubiquitin transferase n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0X6V8_9ASPA)

HSP 1 Score: 59.7 bits (143), Expect = 6.040e-8
Identity = 23/46 (50.00%), Postives = 31/46 (67.39%), Query Frame = 0
Query:  124 CTICLDMVNCGEKVRYLKNCSHSFHAKCIEKWICYANRCPLCCTPV 169
            C++CL     GEKVR+L +C H +HA CI+KW+C    CP C +PV
Sbjct:   76 CSVCLSSFEEGEKVRFLPDCGHGYHAVCIDKWLCTQLSCPFCRSPV 121          
BLAST of Gvermi7094.t1 vs. uniprot
Match: A0A6A2X894_HIBSY (RING-type E3 ubiquitin transferase n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2X894_HIBSY)

HSP 1 Score: 59.7 bits (143), Expect = 9.230e-8
Identity = 25/56 (44.64%), Postives = 35/56 (62.50%), Query Frame = 0
Query:  111 AGNGGGH-VRTQNKCTICLDMVNCGEKVRYLKNCSHSFHAKCIEKWICYANRCPLC 165
            +GN G   +  + +C +CL +   G++VR L  C HSFHA CI+ W+CY   CPLC
Sbjct:   86 SGNMGSEDMSGEYECVVCLSVFEDGDEVRQLPRCKHSFHAPCIDMWLCYHYDCPLC 141          
BLAST of Gvermi7094.t1 vs. uniprot
Match: A0A059CYP0_EUCGR (RING-type domain-containing protein n=2 Tax=Eucalyptus grandis TaxID=71139 RepID=A0A059CYP0_EUCGR)

HSP 1 Score: 58.2 bits (139), Expect = 1.300e-7
Identity = 29/66 (43.94%), Postives = 36/66 (54.55%), Query Frame = 0
Query:  109 DTAGNGG--GHVRTQNKCTICLDMVNCGEKVRYLKNCSHSFHAKCIEKWICYANRCPLCCTPVVAH 172
            D AG  G  G       C +CL+    GEK R L +CSHSFHA+CI+ W+     CP+C T VV  
Sbjct:   63 DYAGGIGDRGTSNGPGDCAVCLESFKVGEKCRSLPDCSHSFHAQCIDSWLLKTPICPICRTHVVVR 128          
BLAST of Gvermi7094.t1 vs. uniprot
Match: A0A843THJ9_COLES (RING-type E3 ubiquitin transferase n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843THJ9_COLES)

HSP 1 Score: 57.0 bits (136), Expect = 1.730e-7
Identity = 27/64 (42.19%), Postives = 34/64 (53.12%), Query Frame = 0
Query:  108 GDTAGNGGGHVRTQNKCTICLDMVNCGEKVRYLKNCSHSFHAKCIEKWICYANRCPLCCTPVVA 171
            GD A  G      +++C +CL     GE VR L  C  SFHA CI+ W+C    CPLC   V+A
Sbjct:   12 GDAAAAGEKGGSDESQCAVCLSAFAEGEDVRRLPKCGQSFHAACIDAWLCARASCPLCRASVLA 75          
BLAST of Gvermi7094.t1 vs. uniprot
Match: A0A4S4D2X1_CAMSI (RING-type domain-containing protein n=1 Tax=Camellia sinensis var. sinensis TaxID=542762 RepID=A0A4S4D2X1_CAMSI)

HSP 1 Score: 57.8 bits (138), Expect = 2.390e-7
Identity = 27/76 (35.53%), Postives = 43/76 (56.58%), Query Frame = 0
Query:   98 MVVEEFCPVVGDTAGNGGGHVRTQNKCTICLDMVNCGEKVRYLKNCSHSFHAKCIEKWICYANR-CPLCCTPVVAH 172
            +++ E  PVV       G    +   C +CL  +  GE++R+L NC H FH +C+++W+ +  + CPLC TP V H
Sbjct:   65 LLIRELLPVVKLEDSAAGDPPES---CAVCLYELEVGEEIRWLANCKHIFHRRCLDRWMDHDQKTCPLCRTPFVPH 137          
The following BLAST results are available for this feature:
BLAST of Gvermi7094.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1R3IK88_COCAP3.750e-950.79Zinc finger, RING-type n=2 Tax=Corchorus TaxID=937... [more]
UPI0009E2290C4.030e-943.86RING-H2 finger protein ATL8-like n=1 Tax=Phalaenop... [more]
A0A843WEL5_COLES4.910e-843.75RING-type E3 ubiquitin transferase n=1 Tax=Colocas... [more]
UPI001920A64D4.980e-844.64RING-H2 finger protein ATL39-like n=1 Tax=Hibiscus... [more]
A0A1U7YUX1_NELNU5.280e-838.81RING-type E3 ubiquitin transferase n=1 Tax=Nelumbo... [more]
A0A2I0X6V8_9ASPA6.040e-850.00RING-type E3 ubiquitin transferase n=1 Tax=Dendrob... [more]
A0A6A2X894_HIBSY9.230e-844.64RING-type E3 ubiquitin transferase n=1 Tax=Hibiscu... [more]
A0A059CYP0_EUCGR1.300e-743.94RING-type domain-containing protein n=2 Tax=Eucaly... [more]
A0A843THJ9_COLES1.730e-742.19RING-type E3 ubiquitin transferase n=1 Tax=Colocas... [more]
A0A4S4D2X1_CAMSI2.390e-735.53RING-type domain-containing protein n=1 Tax=Camell... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 124..165
e-value: 2.3E-4
score: 30.5
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 122..165
e-value: 2.0E-8
score: 34.4
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 124..165
score: 11.427062
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 109..171
e-value: 1.2E-13
score: 52.1
IPR002350Kazal domainPROSITEPS00282KAZAL_1coord: 143..166
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..29
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..29
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 30..172
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..21
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 123..170
NoneNo IPR availableTMHMMTMhelixcoord: 12..34

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1632024..1632636 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7094.t1Gvermi7094.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24229 1632024..1632636 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi7094.t1 ID=Gvermi7094.t1|Name=Gvermi7094.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=173bp
MFRTAADIALTCLLPVAMFALAHISLLMCAVCILCCHVAFKTVQLIQRVA
LVFCANQAMDSLQHVLQSVISGLHWMRTLLSLICSAVGEFCMMDEHGMVV
EEFCPVVGDTAGNGGGHVRTQNKCTICLDMVNCGEKVRYLKNCSHSFHAK
CIEKWICYANRCPLCCTPVVAH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR002350Kazal_dom