Gvermi7074.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi7074.t1
Unique NameGvermi7074.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length386
Homology
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BLAST of Gvermi7074.t1 vs. uniprot
Match: A0A2V3INK5_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INK5_9FLOR)

HSP 1 Score: 113 bits (283), Expect = 3.000e-25
Identity = 61/154 (39.61%), Postives = 90/154 (58.44%), Query Frame = 0 
Query:  228 RKSGSNRRKRYRCGYCHELGHNQKTCPLRPPHVPTSTSRSHTYKTSLPNLPQLHDLAAKLAEDLGRVFLEIAPTPPGEGWQPSQRISFDVVLEAANKGVMHANQSVVDANTDDEFESSLEHLQSAVHLMEKVATLIYKSAIIARIINRCQEDPA 381
            +K  S+RRK YRCGYCH LGHNQKTCP RPPH+  +T+        +  +        K+++++  +FLE A     +  Q +Q I+ D VLE  NK +  A+ +V  A TD  +  ++  LQ+AV L EKVA L+ +    A+II+R  E+P+
Sbjct:  140 KKRRSSRRKPYRCGYCHSLGHNQKTCPDRPPHLGRATNSKSLTSAQIQPI--------KVSDEIATLFLESAAATCTDDAQTAQHITSDTVLELVNKRITDASYAVASATTDTNYHDAITQLQAAVLLYEKVAFLVRRGIFPAQIISRDTEEPS 285
The following BLAST results are available for this feature:
BLAST of Gvermi7074.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3INK5_9FLOR3.000e-2539.61Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 204..224
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..195
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 196..213
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 216..231
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..232
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 226..261

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1481476..1482633 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7074.t1Gvermi7074.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24229 1481476..1482633 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi7074.t1 ID=Gvermi7074.t1|Name=Gvermi7074.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=386bp
MEEHHIDHQVKDQPEHQPEHQHPPEHQPEHQPEHQPERQPEHQPEHRPEH
QPEHRPEHQPEHQQEHQLDHQSEHQLHPHQSEHQSEQDSEHQFDHQPDHQ
PDHQPDHQPDHQPDHQPDHPLDHQLDHQLEHQSEHKPDHQPEHQPEHHPE
HQPGHQPDHQLDHQPEHQPEYQPEHPTEHRLEHQSVHHMEQSHTRQHSDQ
PQPAQQQQLLEQNLEGERDGLQRELPLRKSGSNRRKRYRCGYCHELGHNQ
KTCPLRPPHVPTSTSRSHTYKTSLPNLPQLHDLAAKLAEDLGRVFLEIAP
TPPGEGWQPSQRISFDVVLEAANKGVMHANQSVVDANTDDEFESSLEHLQ
SAVHLMEKVATLIYKSAIIARIINRCQEDPALSNE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036875Znf_CCHC_sf