Gvermi6942.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gvermi6942.t1
Unique Name	Gvermi6942.t1
Type	polypeptide
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	119

Homology

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BLAST of Gvermi6942.t1 vs. uniprot
Match: A0A2V3IRA1_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRA1_9FLOR)

HSP 1 Score: 177 bits (449), Expect = 5.920e-55
Identity = 83/118 (70.34%), Postives = 102/118 (86.44%), Query Frame = 0

Query:    1 MTLHPHDLSWKEERDRLAVESEFISIRLNGKVDADMALLRERIQTLGQKEKQWGEICSQFLSLSILTGIPLVDHHTGEPTFRAWLMLSLSAAVPLYVVALMVHWLQSTSIAFGNALPL 118
            MT+HP DLSW+ ERDRLA+ESEFIS R +G+VDADMA+LRER+Q LG+KEKQW +IC QFLSLS+LTG+ LVD HTGEPT RAW+  ++SAA+PLYVVAL V WL S+S++F +ALPL
Sbjct:   40 MTIHPQDLSWRNERDRLAIESEFISSRDSGEVDADMAMLRERMQLLGKKEKQWTQICEQFLSLSMLTGVALVDRHTGEPTARAWIFFTISAALPLYVVALAVQWLHSSSVSFSHALPL 157

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BLAST of Gvermi6942.t1 vs. uniprot
Match: A0A1X6P0H1_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P0H1_PORUM)

HSP 1 Score: 60.1 bits (144), Expect = 5.090e-9
Identity = 33/87 (37.93%), Postives = 49/87 (56.32%), Query Frame = 0

Query:   32 VDADMALLRERIQTLGQKEKQWGEICSQFLSLSILTGIPLVDHHTGEPTFRAWLMLSLSAAVPLYVVALMVHWLQSTSIAFGNALPL 118
            VD DM  LRER+Q L  +E++W  +  Q   L  L+G+ L D   GEPT  AW+  +LS AVP+Y++ +    L + + +     PL
Sbjct:   57 VDEDMGGLRERLQLLSTREREWAGVKEQLADLERLSGLTLTDAG-GEPTAAAWVFCALSLAVPVYLLWVAYGGLATAAGSLSGTTPL 142

The following BLAST results are available for this feature:

BLAST of Gvermi6942.t1 vs. uniprot

BLAST of Gvermi6942.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3IRA1_9FLOR	5.920e-55	70.34	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]
A0A1X6P0H1_PORUM	5.090e-9	37.93	Uncharacterized protein n=1 Tax=Porphyra umbilical...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 106..118
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 53..72
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 84..105
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..52
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 73..83
None	No IPR available	TMHMM	TMhelix		coord: 83..105

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24229	contig	ScGOVlb_24229:707929..708285 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6942.t1	Gvermi6942.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	mRNA	ScGOVlb_24229 707929..708285 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gvermi6942.t1 ID=Gvermi6942.t1|Name=Gvermi6942.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=119bp
MTLHPHDLSWKEERDRLAVESEFISIRLNGKVDADMALLRERIQTLGQKE
KQWGEICSQFLSLSILTGIPLVDHHTGEPTFRAWLMLSLSAAVPLYVVAL
MVHWLQSTSIAFGNALPL*