Gvermi6911.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6911.t1
Unique NameGvermi6911.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length417
Homology
BLAST of Gvermi6911.t1 vs. uniprot
Match: A0A2V3IXI7_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXI7_9FLOR)

HSP 1 Score: 318 bits (814), Expect = 4.520e-102
Identity = 176/381 (46.19%), Postives = 254/381 (66.67%), Query Frame = 0
Query:   36 ASSLSTPNTPASAPQPVRNKTRSRRGINAPQKSKRVPTYKKLQSGGRHTPQLSPRSNRNKQKALEPSEAQRHPGEKSEKGGSKENVQKQV-KKPEVTLKLSDLAVGEKLKGVVRNTVDHGAYINVGTERDGLVHLRDMSVDFVHVPSDLVREGDAVQVWVKYLDPAKKILGLTMIKPHLGFDSRIKVSDVKVDGRYRGVVERVTNFGAYVDIGAERQAFLHISGLWGECQRDTLDYLRLGQRIWVNVVDVDLPKSHIRLWARARGGQKLSETAETSHIPTQPKIDQMQDYVAPAPTRRIWEPETFVEDVNETENEQDLEKDDGLSEPDSIEDDFSDDEYSFAKDMDTWFKKRESSGRKG--ITGLQEIALMLNQETEFIDD 413
            A S+S P+TP+   + VRN+       NAP + KRVPTY+K+Q+  R  P    R  ++++ +     AQ     + ++  +K + Q  + K+P      SD+ +GE+L GVVRNTV HGAY++VG E+DGLVH+RDM+VDFVH P+D+VR GD V VWVK+++ +K++LGLTM+KPHLGF+SRIK+ D+   GRY+GV+ER+TN+GAYVDIGAERQAFLH++ LWG   R+TLD+LRLGQ+IWV+V +VD  ++HIRLWAR +    L+ T E   IP   +  +++D   P PT R W       DVN+T +    + ++G  E DS++ ++ +DE+SFA+D   W  +  +  RK      L+E+A M ++ TEFIDD
Sbjct:   36 ALSVSQPSTPSK--KSVRNRRTDESRKNAP-RGKRVPTYRKMQNRHRQGPAFHRREQQDRKLSEIADGAQSETQSQIQENPNKTDEQPPLPKRP-----FSDIRLGERLFGVVRNTVPHGAYVDVGAEKDGLVHVRDMAVDFVHTPTDIVRSGDTVTVWVKFVNASKRVLGLTMVKPHLGFESRIKMKDIVEGGRYQGVIERITNYGAYVDIGAERQAFLHVAALWGALPRETLDFLRLGQKIWVHVAEVDTQRNHIRLWARGKDDLPLTYTTEILTIPVHSE-QRVEDAPVPTPTLRAW-------DVNKTGDSDVNQVEEGSEEDDSVQHEYEEDEFSFAEDDSEWLDESITGKRKPHQTDNLREVAHMFDEATEFIDD 400          
BLAST of Gvermi6911.t1 vs. uniprot
Match: A0A1X6P2E1_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P2E1_PORUM)

HSP 1 Score: 158 bits (400), Expect = 5.360e-41
Identity = 86/186 (46.24%), Postives = 114/186 (61.29%), Query Frame = 0
Query:  134 LSDLAVGEKLKGVVRNTVDHGAYINVGTERDGLVHLRDMSVDFVHVPSDLVREGDAVQVWVKYLDPAKKILGLTMIKPHLGFDS--------RIKVSDVKVDGRYRGVVERVTNFGAYVDIGAERQAFLHISGLWGECQRDTLDYLRLGQRIWVNVVDVDLPKSHIRLWARARGG----QKLSETA 307
            L  L  G++L G V N V HGAY++VG   DGLVHLRDMSV+FVH P D++  GD V+V+VKY +     L L++++P     +        R ++ DV V  R  G V RV+NFGAYVD+GA    F+H+S L+G   R TL+ LRLGQ +WV V  VD+ +S I+L AR R      Q L+ TA
Sbjct:  117 LDALVAGQRLDGTVTNLVKHGAYVDVGATTDGLVHLRDMSVEFVHEPEDILAPGDTVEVYVKYAEEVTGRLALSLLRPRPSVATPLPQAARGRTRLVDVAVGSRVLGTVRRVSNFGAYVDVGAAMDGFVHVSLLYGRRPRRTLEELRLGQELWVVVDAVDVARSAIKLRARGRSSYNREQPLTATA 302          
BLAST of Gvermi6911.t1 vs. uniprot
Match: A0A0M8KAN0_9CHLR (Small subunit ribosomal protein S1 n=2 Tax=Ardenticatenia TaxID=1382928 RepID=A0A0M8KAN0_9CHLR)

HSP 1 Score: 130 bits (327), Expect = 4.310e-31
Identity = 65/175 (37.14%), Postives = 104/175 (59.43%), Query Frame = 0
Query:  129 EVTLKLSDLAVGEKLKGVVRNTVDHGAYINVGTERDGLVHLRDMSVDFVHVPSDLVREGDAVQVWVKYLDPAKKILGLTMIKPHL-------GFDSRIKVSDVKVDGRYRGVVERVTNFGAYVDIGAERQAFLHISGLWGECQRDTLDYLRLGQRIWVNVVDVDLPKSHIRLWAR 296
            E+T+ + +L  G +LKG+VR+T D+GA++++G E DGLVH+ ++   FV    D+V EGD V VWVK +D  +K + LTMI P+          D ++++ D++    + G+V  + +FGA+VDIGAE    +HIS L  E      D + +GQ + V ++ +D  +  I L  R
Sbjct:   71 EITVHMDELTPGMELKGIVRSTQDYGAFVDIGAETDGLVHISELKDGFVEKVEDVVSEGDEVTVWVKEIDLERKRISLTMIDPNAPRESQREADDGKLRLRDLEEGQEFTGIVTSIVDFGAFVDIGAETDGLVHISELSEERVNRVEDVVEVGQEVKVRIIGIDRKRKRISLSMR 245          
BLAST of Gvermi6911.t1 vs. uniprot
Match: A0A5J4YU14_PORPP (30S ribosomal protein S1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YU14_PORPP)

HSP 1 Score: 124 bits (311), Expect = 7.920e-29
Identity = 67/203 (33.00%), Postives = 113/203 (55.67%), Query Frame = 0
Query:  134 LSDLAVGEKLKGVVRNTVDHGAYINVGTERDGLVHLRDMSVDFVHVPSDLVREGDAVQVWVKYLDPAKKILGLTMIKPHLGFDSRIKVSDVKVDGRYRGVVERVTNFGAYVDIGAERQAFLHISGLWGECQRDTLDYLRLGQRIWVNVVDVDLPKSHIRLWARARGGQK---------LSETAETSHIPTQPKI--DQMQDYV 325
            L    +G+K+ G V   V  GA++++G  + GL+H+RDMS +FV  P D+V     V+V++KYLD  ++ L L+++ P         +++  +    +G V+RVTN+G ++D+GA   AFLH+S +WG   R+T++ +R G+ +   V  +D  KS +R+ ARA    K         L +  E    P+Q     D+ +DY+
Sbjct:   96 LEHFQMGQKVTGKVFRLVPFGAFVDIGATKAGLLHVRDMSTEFVDRPEDVVSNKQVVEVYIKYLDVEQQKLALSLL-PRTATSRDKNLANFALGEEVKGTVQRVTNYGVFLDVGASCDAFLHVSDIWGRRPRETMESMRFGETVRAWVSHIDETKSFLRVSARASRKDKKAARSDSEALVDITEVFKRPSQSSANADETKDYM 297          
BLAST of Gvermi6911.t1 vs. uniprot
Match: A0A7S0MIS4_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MIS4_9CRYP)

HSP 1 Score: 121 bits (304), Expect = 3.890e-28
Identity = 64/162 (39.51%), Postives = 94/162 (58.02%), Query Frame = 0
Query:  134 LSDLAVGE-KLKGVVRNTVDHGAYINVGTERDGLVHLRDMSVDFVHVPSDLVREGDAVQVWVKYLDPAKKILGLTMIKPHLGFDSRIKVSDVKVDGRYRGVVERVTNFGAYVDIGAERQAFLHISGL---WGECQRDTLDYLRLGQRIWVNVVDVDLPKSHI 291
            L DL  G+  +KG+VRN    GA+++VG ERDG VH+ D+S +F+H PSD +R G  +  WVKY+D A+  LGLTMI    G      + ++ V       + R+T+FG +VDI A+   F+H + L        R +LD L +GQ + V V +VDL +  +
Sbjct:   82 LKDLQYGQGPIKGIVRNVESFGAFVDVGAERDGFVHVSDISTEFIHQPSDFLRSGKQIDCWVKYVDEAQGKLGLTMIPRKHG---ETPLEEIAVGSELGAKILRITSFGIFVDINAQADGFMHSTKLPRRRNSASRVSLDELSIGQTLGVRVTEVDLVRRRV 240          
BLAST of Gvermi6911.t1 vs. uniprot
Match: A0A7C4ZKQ2_9CHLR (S1 RNA-binding domain-containing protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C4ZKQ2_9CHLR)

HSP 1 Score: 117 bits (292), Expect = 3.160e-26
Identity = 60/166 (36.14%), Postives = 99/166 (59.64%), Query Frame = 0
Query:  132 LKLSDLAVGEKLKGVVRNTVDHGAYINVGTERDGLVHLRDMSVDFVHVPSDLVREGDAVQVWVKYLDPAKKILGLTMIKPHLGFDSRIKVSDVKVDGRYRGVVERVTNFGAYVDIGAERQAFLHISGLWGECQRDTLDYLRLGQRIWVNVVDVDLPKSHIRLWARA 297
            L + +L +G++L G V+N  D GA++++G  +DGLVH+ +++   V   +D+V +G  V+VWVK +D  +  + LTMIKP       +K+ DV  D    GVV R+  +GA+VDIG +R   +HIS +  +  +   D L +GQ++ V V+ V+  K  + L  +A
Sbjct:   51 LSIHNLQIGQRLTGKVKNIADFGAFVDIGIAQDGLVHISELAKQNVEKVTDVVSQGQEVEVWVKKVDTKRGRISLTMIKP-----IALKLKDVAEDAEIEGVVTRLEPYGAFVDIGTDRDGLVHISQITYDYIKHPEDALTVGQKVKVKVLKVNRKKRQVDLSIKA 211          
BLAST of Gvermi6911.t1 vs. uniprot
Match: A0A523Y1S3_9CHLR (S1 RNA-binding domain-containing protein n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=A0A523Y1S3_9CHLR)

HSP 1 Score: 115 bits (287), Expect = 4.690e-26
Identity = 67/181 (37.02%), Postives = 100/181 (55.25%), Query Frame = 0
Query:  134 LSDLAVGEKLKGVVRNTVDHGAYINVGTERDGLVHLRDMSVDFVHVPSDLVREGDAVQVWVKYLDPAKKILGLTMIKPHLGFDSRIKVSDVKVDGRYRGVVERVTNFGAYVDIGAERQAFLHISGLWGECQRDTLDYLRLGQRIWVNVVDVDLPKSHIRLWARARGGQKLSETAETSHIPT 314
            L DL    KL+G V      GA+++VG ER+GLVH+  +    V+   D+V+EG  V+VW+  +DP    L LTMIKP      ++K   +K   + +G V R+  FGA+VD+GAER   +H+S L  E   D  D +++G  I V+VVD++  K  IRL  +    +   +   T  +PT
Sbjct:   13 LVDLKPSMKLEGQVTKLGLFGAFVDVGAEREGLVHISMLKRGHVNRAEDVVQEGQKVEVWIHRVDPNAGRLELTMIKP-----IQLKWDKIKPGLKLKGEVVRLEKFGAFVDVGAERPGLVHVSELSTEYVSDPSDVVKVGDEIEVSVVDINRKKRQIRLSMKEVALEVEDDEEATDEVPT 188          
BLAST of Gvermi6911.t1 vs. uniprot
Match: A0A524PD43_9CHLR (S1 RNA-binding domain-containing protein (Fragment) n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=A0A524PD43_9CHLR)

HSP 1 Score: 113 bits (283), Expect = 1.040e-25
Identity = 57/154 (37.01%), Postives = 93/154 (60.39%), Query Frame = 0
Query:  144 KGVVRNTVDHGAYINVGTERDGLVHLRDMSVDFVHVPSDLVREGDAVQVWVKYLDPAKKILGLTMIKPHLGFDSRIKVSDVKVDGRYRGVVERVTNFGAYVDIGAERQAFLHISGLWGECQRDTLDYLRLGQRIWVNVVDVDLPKSHIRLWARA 297
            KGVV      GA++++GTE  GL+H+  +    V+   D ++EGD V+VW++ +D + K + LT+IKP       ++  ++KV    +G V R+ NFGA+VDIGAER   +H+S +  E  +D  D +++G  + V +V++D  K  IRL  +A
Sbjct:    1 KGVVTKIEIFGAFVDIGTEVPGLIHISQLKRGHVNRVGDEIKEGDEVEVWIQKIDQSAKRIELTLIKP-----VSLQWQNLKVGTTLQGEVVRIENFGAFVDIGAERSGLVHVSEMGEEYVKDPRDLVKIGDEVNVTIVEIDRKKKQIRLSMKA 149          
BLAST of Gvermi6911.t1 vs. uniprot
Match: A0A7S2V5P7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5P7_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.060e-25
Identity = 75/197 (38.07%), Postives = 110/197 (55.84%), Query Frame = 0
Query:  126 KKPEVTLKLSDLAVGEKLKGVVRNTVDHGAYINVGTERDGLVHLRDM-SVDFVHVPSDLVREGDAVQVWVKYLDPAKKILGLTM--------------IKPHLGFDSRIKVSDVKVDGRYRGVVERVTNFGAYVDIGAERQAFLHISGLWGECQRDTLDYLRL------------GQRIWVNVVDVDLPKSHIRLWA 295
            KK  V+  LS+L  G++L G VRN    GA+++VG E+DGL+H++DM S  +V    ++ + GD V V VK++D  K++LGLTM              +   L    R  + +++ D +  GVVERVT+FGA+VDIGAE QAFLHI           LDY R             GQR+ + V +V+L K+ +++ A
Sbjct:  132 KKRVVSKPLSELQAGDRLNGTVRNVEKFGAFVHVGAEKDGLLHIKDMCSAQWVSRADEVFKSGDEVSVQVKFVDAEKRLLGLTMKELDDQGMPMIPEEVASALANLDRQSLKNLEEDDQVWGVVERVTSFGAFVDIGAEVQAFLHI-----------LDYPRRVKAASATKSFHRGQRLRLYVKEVELDKNRVKVTA 317          
BLAST of Gvermi6911.t1 vs. uniprot
Match: A0A523YWY0_9CHLR (S1 RNA-binding domain-containing protein n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=A0A523YWY0_9CHLR)

HSP 1 Score: 113 bits (282), Expect = 2.950e-25
Identity = 62/185 (33.51%), Postives = 101/185 (54.59%), Query Frame = 0
Query:  134 LSDLAVGEKLKGVVRNTVDHGAYINVGTERDGLVHLRDMSVDFVHVPSDLVREGDAVQVWVKYLDPAKKILGLTMIKPHLGFDSRIKVSDVKVDGRYRGVVERVTNFGAYVDIGAERQAFLHISGLWGECQRDTLDYLRLGQRIWVNVVDVDLPKSHIRLWARARGGQKLSETAETSHIPTQPKI 318
            L DL   +KL G +      GA+++VG E  GL+H+  +    ++   D+V +GD V VWV  +DP    L LT+IKP       +K  D++   +Y G V R+  FGA++DIGAER   +H+S +  E   D  + +++G+++ V+V++VD  K  IRL  +A    +  +      +PT  +I
Sbjct:   21 LKDLKPAQKLHGKISKIELFGAFVDVGLEHQGLIHISQLKRGQINRVDDIVHQGDEVDVWVLRVDPTADRLDLTLIKP-----VGLKWKDIQPGNKYSGEVIRLEKFGAFIDIGAERPGLVHVSEMRDEYVSDPGELVKVGEKVDVSVLEVDSKKRQIRLSMKAAEMVETLDDEPQEVLPTAMEI 200          
The following BLAST results are available for this feature:
BLAST of Gvermi6911.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IXI7_9FLOR4.520e-10246.19Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A1X6P2E1_PORUM5.360e-4146.24Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A0M8KAN0_9CHLR4.310e-3137.14Small subunit ribosomal protein S1 n=2 Tax=Ardenti... [more]
A0A5J4YU14_PORPP7.920e-2933.0030S ribosomal protein S1 n=1 Tax=Porphyridium purp... [more]
A0A7S0MIS4_9CRYP3.890e-2839.51Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A7C4ZKQ2_9CHLR3.160e-2636.14S1 RNA-binding domain-containing protein n=1 Tax=A... [more]
A0A523Y1S3_9CHLR4.690e-2637.02S1 RNA-binding domain-containing protein n=1 Tax=A... [more]
A0A524PD43_9CHLR1.040e-2537.01S1 RNA-binding domain-containing protein (Fragment... [more]
A0A7S2V5P7_9STRA1.060e-2538.07Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A523YWY0_9CHLR2.950e-2533.51S1 RNA-binding domain-containing protein n=1 Tax=A... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022967RNA-binding domain, S1SMARTSM00316S1_6coord: 225..296
e-value: 2.1E-6
score: 37.3
coord: 138..209
e-value: 4.4E-11
score: 52.8
IPR003029S1 domainPFAMPF00575S1coord: 138..202
e-value: 3.1E-9
score: 37.0
coord: 225..293
e-value: 7.6E-10
score: 39.0
IPR003029S1 domainPROSITEPS50126S1coord: 140..209
score: 15.363928
IPR003029S1 domainPROSITEPS50126S1coord: 227..296
score: 13.294056
NoneNo IPR availableGENE3D2.40.50.140coord: 122..210
e-value: 1.3E-15
score: 59.0
coord: 216..298
e-value: 1.1E-12
score: 49.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 340..371
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..61
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..95
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 96..127
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..127
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 339..371
NoneNo IPR availablePANTHERPTHR1072430S RIBOSOMAL PROTEIN S1coord: 131..212
coord: 219..297
NoneNo IPR availablePANTHERPTHR10724:SF10S1 RNA-BINDING DOMAIN-CONTAINING PROTEIN 1coord: 131..212
coord: 219..297
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..10
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 16..416
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 11..15
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 221..293
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 132..209

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:447059..448309 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6911.t1Gvermi6911.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24229 447059..448309 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6911.t1 ID=Gvermi6911.t1|Name=Gvermi6911.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=417bp
MLAFSAVVPVRLVLRENSVCGRSRPPPLSPTRCAPASSLSTPNTPASAPQ
PVRNKTRSRRGINAPQKSKRVPTYKKLQSGGRHTPQLSPRSNRNKQKALE
PSEAQRHPGEKSEKGGSKENVQKQVKKPEVTLKLSDLAVGEKLKGVVRNT
VDHGAYINVGTERDGLVHLRDMSVDFVHVPSDLVREGDAVQVWVKYLDPA
KKILGLTMIKPHLGFDSRIKVSDVKVDGRYRGVVERVTNFGAYVDIGAER
QAFLHISGLWGECQRDTLDYLRLGQRIWVNVVDVDLPKSHIRLWARARGG
QKLSETAETSHIPTQPKIDQMQDYVAPAPTRRIWEPETFVEDVNETENEQ
DLEKDDGLSEPDSIEDDFSDDEYSFAKDMDTWFKKRESSGRKGITGLQEI
ALMLNQETEFIDDEQS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022967S1_dom
IPR003029S1_domain
IPR012340NA-bd_OB-fold