Gvermi6905.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6905.t1
Unique NameGvermi6905.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length258
Homology
BLAST of Gvermi6905.t1 vs. uniprot
Match: A0A2V3IWD6_9FLOR (RING-type E3 ubiquitin transferase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWD6_9FLOR)

HSP 1 Score: 354 bits (908), Expect = 9.370e-122
Identity = 166/208 (79.81%), Postives = 186/208 (89.42%), Query Frame = 0
Query:   50 MGENESISGHLTRAQQRNQTGSQDASEKKDENPFECHVCLDAPREPVVTPCGHLYCWPCLYRWLRMNGENAQCPVCKSVVSRSTVIPIYGRGGSTSRAQIDEGETPVPPRPSGHREQPTRGMQGVPHFGVHHPTFGRFNHYGAGYENLGLSAFGFFPSLFGLQIAYPHMNEPPREEPQQNQQEDGFPDIVAKIFLLLTVFIAVIITTF 257
            M  N S+  HLT+A+Q +   S + +EKK+EN FECHVCL+APREPVVTPCGHLYCWPCL+RWLRM G+NAQCPVCK+ +SRS+VIPIYGRGGS+SRA+ +EG   VPPRPSGHREQP RGM GVPHFGVHHPTFGRFN YGAGYEN+GLSAFGFFP+LFG+QIAYPHMNEPPREEPQQN+QEDG PDIVAKIFLLLTVFIAVIITTF
Sbjct:    1 MATNNSVPEHLTQARQTSTATSSEVTEKKEENLFECHVCLEAPREPVVTPCGHLYCWPCLFRWLRMQGQNAQCPVCKAAISRSSVIPIYGRGGSSSRARNEEG---VPPRPSGHREQPPRGMPGVPHFGVHHPTFGRFNPYGAGYENVGLSAFGFFPNLFGMQIAYPHMNEPPREEPQQNEQEDGLPDIVAKIFLLLTVFIAVIITTF 205          
BLAST of Gvermi6905.t1 vs. uniprot
Match: A0A5J4YRT6_PORPP (RING-type E3 ubiquitin transferase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YRT6_PORPP)

HSP 1 Score: 139 bits (350), Expect = 4.080e-36
Identity = 70/164 (42.68%), Postives = 95/164 (57.93%), Query Frame = 0
Query:   68 QTGSQDASEKKDENPFECHVCLDAPREPVVTPCGHLYCWPCLYRWLRMNGENAQ---------CPVCKSVVSRSTVIPIYGRGGSTSRAQIDEGETPVPPRPSGHREQPTR------GMQGVPHFGVHHPTFGRFNHYGAGYENLGLSAFGFFPSLFGLQIAYP 216
            + GS   +  +  +PFEC++C D PR+PVVT CGHLYCWPCL+RW+ +   +           CPVCKSVV +STVIPIYGR  S ++   +     VPPRP G R +  +      G+   P+FGV  P  GRF+ +   Y +   +AFG FP +FG  + YP
Sbjct:   77 EAGSAGDAPAETASPFECNICFDLPRDPVVTQCGHLYCWPCLFRWMNVGPSSGAARHPTAPTLCPVCKSVVQKSTVIPIYGRNSSENKDPRESPVEDVPPRPLGQRSEAPQVEARPAGINFPPYFGV--PN-GRFSAHENAYGSFSFTAFGLFPQIFGFYMNYP 237          
BLAST of Gvermi6905.t1 vs. uniprot
Match: M2XYA1_GALSU (RING-type E3 ubiquitin transferase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XYA1_GALSU)

HSP 1 Score: 126 bits (317), Expect = 6.410e-32
Identity = 71/200 (35.50%), Postives = 100/200 (50.00%), Query Frame = 0
Query:   75 SEKKDENP-FECHVCLDAPREPVVTPCGHLYCWPCLYRWLRMNGENAQCPVCKSVVSRSTVIPIYGRGGSTSRAQIDEGETPVPPRPSGHREQ------------------PTRGMQGVPHFG------VHHPTFGRFNHYGAGYENLGLSAFGFFPSLFGLQIAYPHMNEPPREE---PQQNQQEDGFPDIVAKIFLLL 246
            SEK+  +  F+CH+C D+P +PVVTPCGHLYCW C+Y+W+  + +   CP+CKS + +  +IPIYGR G        +    +P RPSG R +                  P     G P +       VHH  FG F+          +SAFG FPSLFGLQ  YP    PP+     P+   +E      V+++ L++
Sbjct:   43 SEKETHSSLFDCHICFDSPNDPVVTPCGHLYCWSCIYKWMAAHPDCPSCPLCKSSIEKDKIIPIYGRNGQDQVDPRTKVIPDIPARPSGQRTELPRSSSTSQSSGGGAFHSPHSPFYGSPFYPGPFSSPVHHSNFGPFS----------VSAFGPFPSLFGLQFTYP----PPQSTGSVPETMTEEQANQAFVSRLLLVM 228          
BLAST of Gvermi6905.t1 vs. uniprot
Match: UPI000873AF17 (E3 ubiquitin-protein ligase RNF185-like n=1 Tax=Anoplophora glabripennis TaxID=217634 RepID=UPI000873AF17)

HSP 1 Score: 122 bits (307), Expect = 5.100e-31
Identity = 73/177 (41.24%), Postives = 96/177 (54.24%), Query Frame = 0
Query:   76 EKKDENPFECHVCLDAPREPVVTPCGHLYCWPCLYRWLRMNGENAQCPVCKSVVSRSTVIPIYGRGGSTSRAQIDEGETPVPPRPSGHREQPTRGMQGVPHFGV----HHPTFGRFNHYGAGYENLGLSAFGFFPSLFGLQIAYPHMNEPPREEPQQNQQEDGFPDIVAKIFLLLTV 248
            EKKD+  FEC++CLD  R+ VV+ CGHL+CWPCL++WL        CPVCK+ +S+  V+P+YGRG   S  Q D  E  VPPRP+G R +P  G    P FG      H +FG           +G   FGFF S   L    P  +  PR   QQ+ +E      ++KIFL L +
Sbjct:   26 EKKDDQMFECNICLDTARDAVVSMCGHLFCWPCLHQWLETRPNRQVCPVCKAAISKEKVVPLYGRG---STKQEDPREK-VPPRPAGQRTEPEPGTS-FPGFGFGDNGFHMSFG-----------IGAFPFGFFTST--LNFGDPRPSAAPRGT-QQHMEEQ----FLSKIFLWLAI 179          
BLAST of Gvermi6905.t1 vs. uniprot
Match: UPI001ABEC2FE (E3 ubiquitin-protein ligase RNF5 n=2 Tax=Bufo TaxID=8383 RepID=UPI001ABEC2FE)

HSP 1 Score: 121 bits (304), Expect = 8.160e-31
Identity = 64/146 (43.84%), Postives = 84/146 (57.53%), Query Frame = 0
Query:   83 FECHVCLDAPREPVVTPCGHLYCWPCLYRWLRMNGENAQCPVCKSVVSRSTVIPIYGRGGSTSRAQIDEGETPVPPRPSGHREQP-TRGMQGVPHFGV--HHPTFGRFNHYGAGYENLGLSAFGFFPSLFGLQIAYPHMNEPPREE 225
            +EC++CL+  REPVV+ CGHLYCWPCLY+WL    E  +CPVCK+ +SR  VIPIYGRG S  +    +     PPRP G R +P TR  +G+P F     H +FG           +G   FGFF ++F     +P    PPR +
Sbjct:   12 YECNICLETAREPVVSVCGHLYCWPCLYQWLETRPERQECPVCKAWISRENVIPIYGRGDSNRQ----DPRLKTPPRPQGQRPEPETRAAEGLPAFTDTGFHMSFG-----------IGAFPFGFFTTVFNTN-DFP---SPPRAD 138          
BLAST of Gvermi6905.t1 vs. uniprot
Match: A0A7S0BU62_9RHOD (RING-type E3 ubiquitin transferase n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BU62_9RHOD)

HSP 1 Score: 122 bits (307), Expect = 2.130e-30
Identity = 69/186 (37.10%), Postives = 93/186 (50.00%), Query Frame = 0
Query:   83 FECHVCLDAPREPVVTPCGHLYCWPCLYRWLRMNGENAQCPVCKSVVSRSTVIPIYGRGGSTSR--AQIDEGETPVPPRPSGHR-EQPTR--------GMQGVPHFGVHHPTFGRFNHYGAGYENLGLSAFGFFPSLFGLQIAYPHM---NEPPREEPQQNQQ----EDGFPDIVAKIFLLLTVFI 250
            FEC++C + P +PVVT CGHLYCW CL++W++       CPVCKS + +S VIP+YGRG   S+   +    E  +PPRP GHR E P          G  G+P     +P FG F+             F   PSLFGL   YP     N P      Q Q+    +    D+++K+ L   +FI
Sbjct:   64 FECNICFETPHDPVVTECGHLYCWRCLFKWMQTKSAYPLCPVCKSKIEKSKVIPVYGRGMQDSKDPREATASEERLPPRPRGHRTEVPVTNGQMNFGGGAYGIPQNRFGNPAFGTFS-------------FTLVPSLFGLHFQYPQASFGNSPDGAPAAQQQRVTSADQEQHDLISKLLLAFALFI 236          
BLAST of Gvermi6905.t1 vs. uniprot
Match: UPI00026594EB (E3 ubiquitin-protein ligase RNF185 n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI00026594EB)

HSP 1 Score: 120 bits (302), Expect = 2.210e-30
Identity = 69/172 (40.12%), Postives = 94/172 (54.65%), Query Frame = 0
Query:   78 KDENPFECHVCLDAPREPVVTPCGHLYCWPCLYRWLRMNGENAQCPVCKSVVSRSTVIPIYGRGGSTSRAQIDEGETPVPPRPSGHREQPTRGMQGVPHFGVHHPTFGRFNHYGAGYENLGLSAFGFFPSLFGLQIAYPHMNEPPREE---PQQNQQEDGFPDIVAKIFLLL 246
            +D   FEC++CLD  +  V++ CGHL+CWPCLY+WL    +   CPVCK+ +SR  VIP+YGRGGS    + D  E  +PPRP GHR +P     G    G H   FG   H+ +    +G   FGFF S F L     +  E    +   P  +Q +D    +V+K+FL L
Sbjct:    9 EDTATFECNICLDTAKNAVISMCGHLFCWPCLYQWLETRPQGQVCPVCKAGISRDKVIPLYGRGGS----KTDPREK-LPPRPQGHRTEPEADYAGPG--GGHRYVFGDNPHFLS--FGIGAFPFGFFASSFNLAGGAGNPMEHQHRDAAGPADHQMQD---QLVSKLFLWL 168          
BLAST of Gvermi6905.t1 vs. uniprot
Match: A0A1I8JNJ7_9PLAT (RING-type E3 ubiquitin transferase n=3 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8JNJ7_9PLAT)

HSP 1 Score: 121 bits (303), Expect = 2.240e-30
Identity = 69/184 (37.50%), Postives = 92/184 (50.00%), Query Frame = 0
Query:   71 SQDASEKKDENPFECHVCLDAPREPVVTPCGHLYCWPCLYRWLRMNGENAQCPVCKSVVSRSTVIPIYGRGGSTSRAQIDEGETPVPPRPSGHREQPTRGMQGVPHFGVHHPTFGRFN--HYGAGYENLGLSAFGFFPSLFGLQIAYPHMNEPPREEPQQNQQEDGFPDIVAKIFLLLTVFIAV 252
            S D  +      FEC++CL+   EPVV+ CGHL+CW C+YRW+   G +  CPVCKS +SR  VIP+YGRGGS       +  + VPPRP G R +P  G       G+H    G F   H G      G+  F F  + FG        N       Q N +ED F   ++K+FL + +   V
Sbjct:   18 SADQEKPSASQQFECNICLETATEPVVSHCGHLFCWACVYRWMETQGRSPSCPVCKSGISRDKVIPLYGRGGS---GNTTDPRSRVPPRPQGQRSEPEAGG------GLHGFADGLFGQQHGGTFQFTFGIGGFPF--AFFGTNFNMNGQNRNRDAFGQVNTEEDAF---LSKVFLYIAIIFVV 187          
BLAST of Gvermi6905.t1 vs. uniprot
Match: UPI000E6E1036 (E3 ubiquitin-protein ligase RNF185-like n=1 Tax=Ctenocephalides felis TaxID=7515 RepID=UPI000E6E1036)

HSP 1 Score: 121 bits (304), Expect = 2.850e-30
Identity = 65/173 (37.57%), Postives = 93/173 (53.76%), Query Frame = 0
Query:   76 EKKDENPFECHVCLDAPREPVVTPCGHLYCWPCLYRWLRMNGENAQCPVCKSVVSRSTVIPIYGRGGSTSRAQIDEGETPVPPRPSGHREQPTRGMQGVPHFGV----HHPTFGRFNHYGAGYENLGLSAFGFFPSLFGLQIAYPHMNEPPREEPQQNQQEDGFPDIVAKIFL 244
            +KKD+  FEC++CLD  ++ VV+ CGHL+CWPC++ WL+       CPVCK+ +S+  VIP+YGRG +      ++    VPPRP+G R +P  G    P FG      H +FG           +G   FGFF S F      P  +  PR  PQ  +++      ++KIFL
Sbjct:   52 DKKDDQMFECNICLDTAKDAVVSLCGHLFCWPCIHTWLQTRPNRQVCPVCKAAISKDKVIPLYGRGSTKQ----EDPRNKVPPRPAGQRTEPEAGSN-FPGFGFGDGGFHMSFG-----------IGAFPFGFFTSTFNF--GEPRPSAAPRGTPQFEEEQ-----FLSKIFL 201          
BLAST of Gvermi6905.t1 vs. uniprot
Match: A0A8C5PSL3_9ANUR (RING-type E3 ubiquitin transferase n=1 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5PSL3_9ANUR)

HSP 1 Score: 119 bits (299), Expect = 4.540e-30
Identity = 68/170 (40.00%), Postives = 91/170 (53.53%), Query Frame = 0
Query:   83 FECHVCLDAPREPVVTPCGHLYCWPCLYRWLRMNGENAQCPVCKSVVSRSTVIPIYGRGGSTSRAQIDEGETPVPPRPSGHREQP-TRGMQGVPHFGV--HHPTFGRFNHYGAGYENLGLSAFGFFPSLFGLQIAYPHMNEPPREEPQQNQQEDGFPDIVAKIFLLLTVF 249
            +EC++CL+  REPVV+ CGHLYCWPCL++WL    +  +CPVCK+ VSR  VIPIYGRGG+  +    +     PPRP G R +P  R   G+P F     H +FG           +G   FGFF ++F     Y   + P  E      +  G PD    +FL + VF
Sbjct:   12 YECNICLETAREPVVSVCGHLYCWPCLHQWLETRPDRQECPVCKAGVSRENVIPIYGRGGTNQQ----DPRLKTPPRPPGQRPEPENRAAGGLPGFTDTGFHMSFG-----------VGAFPFGFFTTVFNTNDFY---SGPRAETGLAQGRFFGLPD---SLFLFIAVF 160          
The following BLAST results are available for this feature:
BLAST of Gvermi6905.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IWD6_9FLOR9.370e-12279.81RING-type E3 ubiquitin transferase n=1 Tax=Gracila... [more]
A0A5J4YRT6_PORPP4.080e-3642.68RING-type E3 ubiquitin transferase n=1 Tax=Porphyr... [more]
M2XYA1_GALSU6.410e-3235.50RING-type E3 ubiquitin transferase n=1 Tax=Galdier... [more]
UPI000873AF175.100e-3141.24E3 ubiquitin-protein ligase RNF185-like n=1 Tax=An... [more]
UPI001ABEC2FE8.160e-3143.84E3 ubiquitin-protein ligase RNF5 n=2 Tax=Bufo TaxI... [more]
A0A7S0BU62_9RHOD2.130e-3037.10RING-type E3 ubiquitin transferase n=1 Tax=Rhodoso... [more]
UPI00026594EB2.210e-3040.12E3 ubiquitin-protein ligase RNF185 n=1 Tax=Galendr... [more]
A0A1I8JNJ7_9PLAT2.240e-3037.50RING-type E3 ubiquitin transferase n=3 Tax=Macrost... [more]
UPI000E6E10362.850e-3037.57E3 ubiquitin-protein ligase RNF185-like n=1 Tax=Ct... [more]
A0A8C5PSL3_9ANUR4.540e-3040.00RING-type E3 ubiquitin transferase n=1 Tax=Leptobr... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 85..125
e-value: 4.8E-10
score: 49.4
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 85..126
score: 13.699024
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 47..138
e-value: 1.1E-19
score: 72.2
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 84..131
e-value: 8.3E-12
score: 44.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 150..169
NoneNo IPR availablePANTHERPTHR12313:SF0FI06431P-RELATEDcoord: 61..231
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..195
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 219..237
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 196..218
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 257..257
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 238..256
NoneNo IPR availableCDDcd16745RING-HC_AtRMA_likecoord: 83..127
e-value: 3.0427E-26
score: 95.0635
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 80..138
NoneNo IPR availableTMHMMTMhelixcoord: 193..215
NoneNo IPR availableTMHMMTMhelixcoord: 235..254
IPR045103E3 ubiquitin-protein ligase RNF5/RNF185-likePANTHERPTHR12313E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATEDcoord: 61..231
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 100..109

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:405620..406476 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6905.t1Gvermi6905.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24229 405620..406476 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6905.t1 ID=Gvermi6905.t1|Name=Gvermi6905.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=258bp
MCKLTVAKSKWLSCILVPWATAAEPAAYVSDPFPASPPSSPISGVSSRVM
GENESISGHLTRAQQRNQTGSQDASEKKDENPFECHVCLDAPREPVVTPC
GHLYCWPCLYRWLRMNGENAQCPVCKSVVSRSTVIPIYGRGGSTSRAQID
EGETPVPPRPSGHREQPTRGMQGVPHFGVHHPTFGRFNHYGAGYENLGLS
AFGFFPSLFGLQIAYPHMNEPPREEPQQNQQEDGFPDIVAKIFLLLTVFI
AVIITTF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR045103RNF5/RNF185-like
IPR017907Znf_RING_CS