Gvermi6897.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6897.t1
Unique NameGvermi6897.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length200
Homology
BLAST of Gvermi6897.t1 vs. uniprot
Match: A0A2V3IUH1_9FLOR (Polyketide_cyc domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUH1_9FLOR)

HSP 1 Score: 238 bits (607), Expect = 5.490e-77
Identity = 124/199 (62.31%), Postives = 149/199 (74.87%), Query Frame = 0
Query:    1 MRGSSNVAFA-TSPMLLRRRSFPRVAPLAPVRAPPTFATPKAEMVRVSVPLKIEAPNIYCFELFSDLSKMPEWSSALEAVERDTEDPSFSEWKFAWNGIRLSWRAKDVENLDNHNTEIPAIRWRSVSGLVHTGEVQFESLQQSV-TNMIMTIDYDIESLFARIMRSSLVSNFVEGAIESDLSKFRSYALRKYRHEKISG 197
            M  + N AFA +SP L +   F   A +   RA P F+ P  +MVRVSVPLKIEAPN YC+ LF+DLS MPEWSS LEAVERD +DP FS+WKF+WNGIRL WRAKDV N + ++ + P + W+SVSGLVHTG VQF  L+Q   T MI+T+ YDI++L A IM+SSLVSNFV+ AIE+DLSKFRSYALRKYR  KIS 
Sbjct:    1 MHPTRNAAFAFSSPFLPKATPFSS-AHVTSTRAAPKFSAPTMQMVRVSVPLKIEAPNQYCYSLFADLSNMPEWSSTLEAVERDAQDPLFSDWKFSWNGIRLKWRAKDVLNDEQNHDDAPEVCWKSVSGLVHTGVVQFHPLEQDKSTTMILTVHYDIDNLLATIMQSSLVSNFVQSAIENDLSKFRSYALRKYRRAKISS 198          
BLAST of Gvermi6897.t1 vs. uniprot
Match: UPI001E1E07DE (uncharacterized 17.2 kDa protein in melC2-rnhH intergenic region-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E07DE)

HSP 1 Score: 150 bits (380), Expect = 1.730e-42
Identity = 74/162 (45.68%), Postives = 97/162 (59.88%), Query Frame = 0
Query:   35 TFATPKAEMVRVSVPLKIEAPNIYCFELFSDLSKMPEWSSALEAVERDTEDPSFSEWKFAWNGIRLSWRAKDVENLDNHNTEIPAIRWRSVSGLVHTGEVQFESLQQSVTNMIMTIDYDIESLFARIMRSSLVSNFVEGAIESDLSKFRSYALRKYRHEKIS 196
            T  T   + V+V VP+ +E P    F LF+DL  M +WSS L  V RD  D + S W F WNG+RLSW A+D + +     E+  I W SV GL H G V F  L  + T + MT+DYD+ SL A IM +  + NFVE AI++DL KFR+YALR  R  K++
Sbjct:   47 TPGTATMKFVQVRVPVPVEVPREMAFGLFADLDSMSQWSSTLAKVSRDAHDHTLSHWNFEWNGVRLSWSARDKDRI-----ELERISWESVDGLTHKGRVDFVELGPTATELTMTVDYDVASLLAVIMETRFIQNFVESAIKADLEKFRTYALRMQRRAKMN 203          
BLAST of Gvermi6897.t1 vs. uniprot
Match: A0A6H2NQT1_9CYAN (Polyketide_cyc domain-containing protein n=2 Tax=Pseudanabaenales TaxID=2881377 RepID=A0A6H2NQT1_9CYAN)

HSP 1 Score: 84.7 bits (208), Expect = 1.950e-17
Identity = 42/141 (29.79%), Postives = 79/141 (56.03%), Query Frame = 0
Query:   47 SVPLKIEAPNIYCFELFSDLSKMPEWSSALEAVERDTEDPSFSEWKFAWNGIRLSWRAKDVENLDNHNTEIPAIRWRSVSGLVHTGEVQFESLQQSVTNMIMTIDYDIESLFARIMRSSLVSNFVEGAIESDLSKFRSYAL 187
            SV + ++ P    + L+SDL +MP W   +++V    ++P  SEWK A  G+  +WR+K + NL  H      I+W ++ GL + G ++F   ++  + + +T+ Y + ++  + M    +   VE  ++SDL++FR YA+
Sbjct:    8 SVVVDVDIPVETSWALWSDLEQMPRWMKWIDSVRVPEDNPDLSEWKLASRGLEFTWRSK-ITNLVTHQI----IQWEAIDGLPNRGAIRFYDRKEGKSTVKLTVSYAVPTI-VKWMDGLFLGRLVEATLQSDLNRFRDYAM 142          
BLAST of Gvermi6897.t1 vs. uniprot
Match: UPI00168975C7 (SRPBCC family protein n=1 Tax=Pseudanabaena sp. FACHB-2040 TaxID=2692859 RepID=UPI00168975C7)

HSP 1 Score: 79.7 bits (195), Expect = 1.540e-15
Identity = 45/141 (31.91%), Postives = 80/141 (56.74%), Query Frame = 0
Query:   47 SVPLKIEAPNIYCFELFSDLSKMPEWSSALEAVERDTEDPSFSEWKFAWNGIRLSWRAKDVENLDNHNTEIPAIRWRSVSGLVHTGEVQFESLQQSVTNMIMTIDYDIESLFARIMRSSLVSNFVEGAIESDLSKFRSYAL 187
            SV + ++ P    + L+SDL +MP W   +++V    E+P  S WK A  G+  +W ++ + NL         I+W SV GL + G ++F   + S T + +T+ YD+ ++  + M +  +   VEG +++DL++FR+YAL
Sbjct:    8 SVLVDVDVPVEMAWGLWSDLEQMPRWMKWIDSVTVLPENPELSRWKLATRGLEFTWLSR-ITNLVPEQI----IQWESVDGLPNRGAIRFYDRKGSTT-VKLTVSYDVPAI-VKWMDNLFLGRVVEGELQADLNRFRTYAL 141          
The following BLAST results are available for this feature:
BLAST of Gvermi6897.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IUH1_9FLOR5.490e-7762.31Polyketide_cyc domain-containing protein n=1 Tax=G... [more]
UPI001E1E07DE1.730e-4245.68uncharacterized 17.2 kDa protein in melC2-rnhH int... [more]
A0A6H2NQT1_9CYAN1.950e-1729.79Polyketide_cyc domain-containing protein n=2 Tax=P... [more]
UPI00168975C71.540e-1531.91SRPBCC family protein n=1 Tax=Pseudanabaena sp. FA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019587Polyketide cyclase/dehydrasePFAMPF10604Polyketide_cyc2coord: 43..184
e-value: 2.0E-8
score: 34.7
IPR023393START-like domain superfamilyGENE3D3.30.530.20coord: 43..193
e-value: 6.1E-22
score: 80.0
NoneNo IPR availablePANTHERPTHR33824POLYKETIDE CYCLASE/DEHYDRASE AND LIPID TRANSPORT SUPERFAMILY PROTEINcoord: 34..191
NoneNo IPR availableSUPERFAMILY55961Bet v1-likecoord: 43..190

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:387747..388346 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6897.t1Gvermi6897.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24229 387747..388346 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6897.t1 ID=Gvermi6897.t1|Name=Gvermi6897.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=200bp
MRGSSNVAFATSPMLLRRRSFPRVAPLAPVRAPPTFATPKAEMVRVSVPL
KIEAPNIYCFELFSDLSKMPEWSSALEAVERDTEDPSFSEWKFAWNGIRL
SWRAKDVENLDNHNTEIPAIRWRSVSGLVHTGEVQFESLQQSVTNMIMTI
DYDIESLFARIMRSSLVSNFVEGAIESDLSKFRSYALRKYRHEKISGCV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019587Polyketide_cyclase/dehydratase
IPR023393START-like_dom_sf