Gvermi6880.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gvermi6880.t1
Unique Name	Gvermi6880.t1
Type	polypeptide
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	610

Homology

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BLAST of Gvermi6880.t1 vs. uniprot
Match: A0A2V3IM16_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IM16_9FLOR)

HSP 1 Score: 352 bits (903), Expect = 2.080e-110
Identity = 248/591 (41.96%), Postives = 326/591 (55.16%), Query Frame = 0

Query:   41 MFMITDTSSSSPLIKRRSMHSSPAQPLEKKQMESPVSYTSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSQN----QQKCGAVGARSLAAPTAQPPKASALPHSVRHKKQISFADNGVHESGTSKRIEDRSSTMKPRKSITAGFTPPPSKIPTRKRRTPSYARSTKASRRRLDWTKVSSAPKHLDEHESVPKVRKLDFSKTIPVSPEVLHRKTGRIRKVPSPRKSLGFQPNPPPRYLGKPRPTVRPTAKSEAVLAGRARTAPVWPTPSFSVRKPGRTEAKPFSLGSVELHEICSKKIQAKRKMEEQEDRRRRNVQPVKLHHDILKGPTFVPNLDNKVLTVPVDPVPWASERRKRTLAFEAAQRARVEEMDAMREQAERMREIADEERLREEYELKRFRARPVPRSHYNPDTPPKRRAFVAVMQTKEKSAREIEVDVNDELESIFSNLAINGDTETTLTFDRQDEKVRRCVSLRATDRKDLYSIVEET---------PIVEESSEHLEIVQNAMAVN---------EAEKENIVPRLTKNLEMQKASQKQPKRPSLGPIRLFNEIRNTLFGR 609
            MF ITDTS  SPLI+ R +HS+  +  +KKQ  +P S TSA                                                S +    Q++ G+  A S +       K++  P   +    +     G HE+ T K   D  S+ KPRKSIT    P PS+IP+ +RRTP YARSTKASRRR +             + +     ++DF+KTIP SPEVL RK  R  K  SPR+   F+  P PRYL  PRP VRPTAKSEA+L G A +AP+   P  +  K   T  KPF L SVELHE   KKI AKRK E++E  RRR + P+ L+ ++L+GPTFVP LD K LT+PVD +PWA+ERR+RTLA+EAAQRAR+EEM+AM+E A+R RE+A+EERLRE+YE K+FR RPVPRSHY PDTPPKR+A +AV++ KE  AR +E +  +ELES+FS LA++ + E   T    +  +       AT +      +E            ++  S E+ +     +  N         E  KENI+P        QK  ++Q  +  LGP+RLFNEIRNTL GR
Sbjct:    1 MFAITDTSPGSPLIQHRRIHSNFKEQPDKKQFGTPNSCTSAVTESPPVSQSATHCSLRHSRPHTRVRFDDTSTARSSGSVTPVPSRTTLSGHDTTPQKQIGSTPATSTSY-IRNLQKSAVTPVVEKRSTLVQSESFGEHETVTLKSATDFFSSEKPRKSITDNVKPLPSRIPSSRRRTPGYARSTKASRRRSEMRSALFLQSQRKHNNTSKPTTEIDFTKTIPKSPEVLRRKFARTPKEVSPRRRTTFKAKPVPRYLTMPRPVVRPTAKSEAILHGLASSAPM--PPVLAACKLSGTVPKPFKLASVELHEARMKKICAKRKAEQEEAERRRVLHPLALNREMLEGPTFVPCLDKKNLTMPVDLLPWAAERRERTLAYEAAQRARIEEMEAMKEIAQRQRELAEEERLREDYERKKFRPRPVPRSHYYPDTPPKRKAAIAVIRIKEDIARRMECE-EEELESVFSALAVSQNLENFSTLKTPENLLSGNDPSSATSKTAEKVGIENAFSSERGRSKQVINTSKENTDSDSQVVPKNDSLKEGNAIEVGKENIIPV---GEAKQKDRRRQGTQVVLGPMRLFNEIRNTLLGR 584

The following BLAST results are available for this feature:

BLAST of Gvermi6880.t1 vs. uniprot

BLAST of Gvermi6880.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IM16_9FLOR	2.080e-110	41.96	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 422..445
None	No IPR available	COILS	Coil	Coil	coord: 345..365
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 177..191
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..219
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..106

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24229	contig	ScGOVlb_24229:342222..344051 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6880.t1	Gvermi6880.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	mRNA	ScGOVlb_24229 342222..344051 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gvermi6880.t1 ID=Gvermi6880.t1|Name=Gvermi6880.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=610bp
MSDHTTTTSFQMSFDHEDSFLTALSSADDRTTEPTGASTKMFMITDTSSS
SPLIKRRSMHSSPAQPLEKKQMESPVSYTSAVTHSPAVSQSATSNDNKTV
HNRVTFHSGLVHSSTSIALAPSDSLSPNSSQNQQKCGAVGARSLAAPTAQ
PPKASALPHSVRHKKQISFADNGVHESGTSKRIEDRSSTMKPRKSITAGF
TPPPSKIPTRKRRTPSYARSTKASRRRLDWTKVSSAPKHLDEHESVPKVR
KLDFSKTIPVSPEVLHRKTGRIRKVPSPRKSLGFQPNPPPRYLGKPRPTV
RPTAKSEAVLAGRARTAPVWPTPSFSVRKPGRTEAKPFSLGSVELHEICS
KKIQAKRKMEEQEDRRRRNVQPVKLHHDILKGPTFVPNLDNKVLTVPVDP
VPWASERRKRTLAFEAAQRARVEEMDAMREQAERMREIADEERLREEYEL
KRFRARPVPRSHYNPDTPPKRRAFVAVMQTKEKSAREIEVDVNDELESIF
SNLAINGDTETTLTFDRQDEKVRRCVSLRATDRKDLYSIVEETPIVEESS
EHLEIVQNAMAVNEAEKENIVPRLTKNLEMQKASQKQPKRPSLGPIRLFN
EIRNTLFGR*