Gvermi6865.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6865.t1
Unique NameGvermi6865.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length553
Homology
BLAST of Gvermi6865.t1 vs. uniprot
Match: R7QHG5_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHG5_CHOCR)

HSP 1 Score: 353 bits (905), Expect = 1.110e-111
Identity = 230/496 (46.37%), Postives = 279/496 (56.25%), Query Frame = 0
Query:   35 SRRRRFAAYSLAFACMLAMSLLLDVRRAAVSRRAPKLQLTLPARTSLQSL----DHHSPDSTAADAPPADAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVA-PLSAPVSNLNPNLSDQELRDDVDQLIAHV--DEQQXXXXXXXXXXXXXXXQLSNATA------------AQTNASAALQSLHSPHSLHAAPPTPRPAPVNASEIDVRLNSQQYFDDAQARLARMLADPGTNALIDENELRTLQALQLQATRGDCEHASDREP-TLFKTDAEAASNLDIERSDPLWGAWCLFLGSYKTDAMRDFVTKQQLLEHRVAALRERLPDDGANYTHADAAPFDALAASLDDVMAPEHQSALRANIDRILSHLRDLDVRYLAALSLQATFGDCAPYSAATTAAAAQSRQAVAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXLRVLREPLLEQTALRRQGAQWGAWCVLQGKKRATAAAQLAQRVDLLVDQLSKSEA 510
            SRRRR   YS+AFA MLAMS +LDVRRAA+  R  K+QL+LP+ +SL SL    DH     +AAD  P +                                   A P   PV   +P LS+QEL+DDVDQLIAHV  +E+                    AT              QT A+  L     P    A P         A   +VRLNS++ F  +Q RL  +LAD      +DEN+LRTL+AL LQATRGDCE  S  E  +LFKTDAEAASN+DIER DPLWGAWCLF+GSYKTDAMRD+VTKQ+++E ++   +       AN T A A+ FD  AA+LDDVM PE QSA+R  +D I +HLR+ DVRYLAAL+LQATFGDC PY +   AAA +    V                              LR L EPLL+Q  +RRQGAQWGAWCVLQGKKR  AA++L+QRVDLLV+QLSKS+A
Sbjct:   69 SRRRRLILYSVAFATMLAMSSVLDVRRAALKHRHSKVQLSLPSASSLSSLPNVDDHQESPVSAADLHPNEKNPSVSLRPGDPYLPDADTHTANLSAPTVAKGQVAADPDQPPVVKGDPVLSEQELKDDVDQLIAHVAQEEENGAANATTPTSPLPDPPADPATENKPDPAVPVPKPVQTIANTFLGLAADPPPAAATPDGSAQPNTTADGTEVRLNSEESFSSSQKRLQVLLADDSVKRFVDENDLRTLEALALQATRGDCEQRSGSEGGSLFKTDAEAASNVDIERHDPLWGAWCLFMGSYKTDAMRDYVTKQRVIEEKILTAKGSAD---ANVT-AVASAFDPHAATLDDVMTPEQQSAMREKMDTIAAHLREYDVRYLAALALQATFGDCGPYGSEAVAAAKEPESTV-----------------------------ELRKLAEPLLDQIVVRRQGAQWGAWCVLQGKKRTLAASELSQRVDLLVNQLSKSQA 531          
BLAST of Gvermi6865.t1 vs. uniprot
Match: A0A7S1TK85_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TK85_9RHOD)

HSP 1 Score: 75.9 bits (185), Expect = 6.970e-11
Identity = 71/306 (23.20%), Postives = 118/306 (38.56%), Query Frame = 0
Query:  233 QQYFDDAQARLARMLADPGTNALIDENELRTLQALQLQATRGDCEHASDREP--TLFKTDAEAASNLDIERSDPLWGAWCLFLGSYKTDAMRDFVTKQQLLE---------------------------HRVAALRERLPDDGANYTHADAAPFDALAASLDDVMAPEHQSALRANIDRILSHLRDLDVRYLAALSLQATFGDCAPYSAATTAAAAQSRQAVAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXLRVLREPLLEQTALRRQGAQWGAWCVLQGKKRATAAAQLAQRVDLLVDQLSKSE 509
            QQ  +  Q++ A +    G      E E   +QA+ LQ + GDCE  SD E   +LFKT  E+ ++ ++ER+ PLWGAWC+  G  + D M++++ K++ L+                           +  AA  E +  +G   T  +    D+ A  ++++ A   +   R       + + DL+ RY+ AL LQ   G C+                                                R   +  LE  +++R  A WGAWC+     +  A  +  +R   L D   K +
Sbjct:  251 QQARERVQSQAASLAEVAG------EAEYLAMQAMALQISHGDCERTSDDEEHKSLFKTATESEAD-EVERTSPLWGAWCILRGRNRLDLMKEYLAKEEYLQAQRRRALESHERELANVPAVPVVEADNNTFAARNETIHQEGKTGTEQE----DSEAFGVEEIEAELLEPRTRVKELERENLVGDLEARYMEALYLQTLKGSCS------------------------------------------------RDKSKFELESLSVKRDTALWGAWCMFHDLSQEDAKVEYLRREGYLRDLKRKMD 497          
The following BLAST results are available for this feature:
BLAST of Gvermi6865.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
R7QHG5_CHOCR1.110e-11146.37Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S1TK85_9RHOD6.970e-1123.20Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 151..182
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 521..552
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..225
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 164..204
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..138
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 26..30
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 31..39
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 40..57
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..30
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 58..552
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 15..25
NoneNo IPR availableTMHMMTMhelixcoord: 40..57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:242474..244132 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6865.t1Gvermi6865.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24229 242474..244132 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6865.t1 ID=Gvermi6865.t1|Name=Gvermi6865.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=553bp
MAAKRRALAMPLKRAAAAAAAAGAAAPDSPDVRASRRRRFAAYSLAFACM
LAMSLLLDVRRAAVSRRAPKLQLTLPARTSLQSLDHHSPDSTAADAPPAD
AAADTAAVAAHTSPPPSSAPPPSPPSTPADPPPVVAPLSAPVSNLNPNLS
DQELRDDVDQLIAHVDEQQQQQQQQQQQQQQQHHQLSNATAAQTNASAAL
QSLHSPHSLHAAPPTPRPAPVNASEIDVRLNSQQYFDDAQARLARMLADP
GTNALIDENELRTLQALQLQATRGDCEHASDREPTLFKTDAEAASNLDIE
RSDPLWGAWCLFLGSYKTDAMRDFVTKQQLLEHRVAALRERLPDDGANYT
HADAAPFDALAASLDDVMAPEHQSALRANIDRILSHLRDLDVRYLAALSL
QATFGDCAPYSAATTAAAAQSRQAVAAGSSAAGASAAAAAAAAADAAAAD
ARADRLRVLREPLLEQTALRRQGAQWGAWCVLQGKKRATAAAQLAQRVDL
LVDQLSKSEAVAEAEAEAEAEAAAAAAGAAAPAERAGRRADERAGDGGGG
GS*
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