Gvermi6789.t2 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6789.t2
Unique NameGvermi6789.t2
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length736
Homology
BLAST of Gvermi6789.t2 vs. uniprot
Match: A0A2V3IXL1_9FLOR (TAF4 domain-containing protein n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXL1_9FLOR)

HSP 1 Score: 498 bits (1282), Expect = 2.900e-160
Identity = 354/748 (47.33%), Postives = 433/748 (57.89%), Query Frame = 0
Query:    1 MITRPQLLQSVSNFVKQSTPAAKDVDVIKDFKAWYEHEYEIQKQRS----RHTQAQLQNQVRHQPTSGQ-INRGSNVPLHSGSQTIRTSIAPQTVSTARGQVKQEPQRSNIVRTAGKSIGAKPEPMRLVPGARAVVPKNNG-----GRAVSADNIGGRQFPVNGVPRPPPMPTPASSNLMMHSSV-TPQGRVNQVVASKFPDGRPNSLPHTVAQKAVGSVPQVAGKSIGGKSLLHTNAIIQAKQKQLRRPPQKSVAKTTIRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPGGNVQISFAPVQLQAQLPAKRILENNTSSSPSNTAKKVKTAPKVSKTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPMPSGA-LPPAGPTPMAPGNPNADVV-QKKVRRQVDLKEINLVDNVVDIEDEEVKLNVDANGKRQAVEEVVQYSPDMIVSGPVLRKKMQSIAKRHGIHENVNKEAMEIMSLAVRERLACILESLKTIASVRVGAEKGQWGRVETGLNVREKLKRAREDEERALQVAAEMRVRRRKEQREADARRVAGEAAKNDKSARDSSAAAEAERKEKLALEKKRKESSSQRDALSGLVRDFDRRRRRASAKPLAPLKPLGK-SGLPPLARRPNSDGSGRSGLKPLGSLDRLKDLGPLVKLGGKSNSPAPRGLGRDPVAAQVRLRVTLMDCVFLFESERNTKKSSLLYKWYARLPNG 734
            +I+RPQL QSV+ FVKQS PAAKDVDVI+DFKAWYEHEYE+Q+QR+    R    + QNQV  Q    Q ++R  +  +H  SQ +R ++APQ + +AR Q+K E     + R +GK+IG KP  +R V   R V P+  G     G++++  +IGG     +G+     +    SS+ M+  +  T Q    Q VAS  P  R  S P    +     +PQ AGKSIGGKSLL      Q+K K  RRP QK+  K  ++T                                                        N+Q+ +     Q+ LP KR+L+N +SSSP N  K+ K APK SK                                    RP   GA L  +G    APG    D   QKKVRR  DLKEINLVDNVVDIEDEEVKL VDA+GK Q VE+VVQYS DMI++GP LRKKM +IAKR  + E   KEAME+MSLAVRERLA ILESLK IA+ R+ + K QWG V TG+N+REKL+R R+DEERALQVAAEMRV+RRKE                                 KLALEKK KESSSQRDA+SGL+R+FDRRRRRA AKPLAPLKPL K  GLPP+ +RPNS+  GR GLKPLGSLD LK  GPL KL G+SNS  PRGLG+ PV   V+LRVTL DC+FLFES+RNT+KS+L++KWYARL  G
Sbjct:  287 LISRPQLFQSVATFVKQSNPAAKDVDVIRDFKAWYEHEYEMQRQRTLDQRRQGHQEDQNQVPSQEAPTQTVSRVVSHAVHGISQAVRPNVAPQHMVSARSQMKAEQAVIGVPRPSGKTIGTKPVAIRGVAVNR-VPPQAPGVGRGPGKSIANKSIGG-----SGLQGAVIVANSVSSHAMVQKTTPTGQSANKQTVASAMPVSRTESSPKGPQRV----IPQ-AGKSIGGKSLLPNKNTAQSKPKPPRRPAQKTTPKGPVKTPPKGAGKGKSPAAYPFHGGMPS--------------------------------SSNLQVGYH-AHAQSHLPGKRVLDNASSSSPPNALKRAKPAPKPSKAPLGKKKPAAAVGNPGPGKGARPPVPKLDPKNRAGKRPAAPGAGLVHSGGASTAPGVQVLDGAGQKKVRRHEDLKEINLVDNVVDIEDEEVKLKVDASGKPQTVEDVVQYSSDMILAGPRLRKKMGTIAKRTDMTEGFTKEAMEVMSLAVRERLASILESLKPIATSRLDSAKEQWGTVATGMNIREKLERMRQDEERALQVAAEMRVKRRKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLALEKKXKESSSQRDAMSGLIREFDRRRRRA-AKPLAPLKPLSKPGGLPPIPKRPNSESFGRPGLKPLGSLDSLKAAGPLFKL-GRSNSAVPRGLGKAPVQTNVKLRVTLRDCLFLFESDRNTRKSTLIHKWYARLQCG 988          
BLAST of Gvermi6789.t2 vs. uniprot
Match: R7Q6Z9_CHOCR (TAF4 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q6Z9_CHOCR)

HSP 1 Score: 258 bits (660), Expect = 8.760e-71
Identity = 275/787 (34.94%), Postives = 375/787 (47.65%), Query Frame = 0
Query:    2 ITRPQLLQSVSNFVKQSTPAAKDVDVIKDFKAWYEHEYEIQKQRSRHTQAQL-QNQVRH--QPTSGQINRGSNVPLH---SGSQTIRTSIAPQTVSTARGQVKQEPQRSNIVRTAGKSIGAKPEPMRL-VPGARAVVPKNNGGRAVSADNIGGRQF-----PVNGVPRPPPMPTPASSNLMMHSSVTPQGRVNQV-VASKFPDGRPNSLPHTVAQKAVGSVPQVAGKSIGGKSLLHTNAIIQA---------KQKQLRRPPQKSVAKTTIRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPGGNVQISFAPVQLQAQLPA--KRILENNTSSSPSNTAKKVKTAPKVSK--TTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPMPSG-----ALPPAGPTPMAPGNPNADVVQKKVRRQVDLKEINLVDNVVDIEDEEVKLNVDANGKRQAVEEVVQYSPDMIVSGPVLRKKMQSIAKRHGIHENVNKEAMEIMSLAVRERLACILESLKTIASVRVGAEKGQWGRVETGLNVREKLKRAREDEERALQVAAEMRVRRRKEQREADARRVAGEAAKNDKSARDSSAAAEAERKEKLALEKKRKESSSQRDALSGLVRDFDRRRRR-ASAKPLAPLKPL----GKSG--------LPPLARRPNSDGSGRSGLKPLGS-------LDRLKDLGPLVKLGGKSNSPAPRGLGRDPVAA------QVRLRVTLMDCVFLFESERNTKKSSLLYKWYARL 731
            I R +LL+SV+ FV+ S P A  +D+I++FK WYE E+E QK +S   + ++ Q Q +H  Q    Q+ +   +PLH      Q  R++      + A+ Q               K+ G + + +   +    A +P   GG+++S   +  R+      P  G  R  P   P   ++   S + P   +    VA K P     ++P       V  +  VAGK++ G   L  N +            K K  R+ P K+ AKT+                              XXXXXXXXXXXXXX           +P   V    A     A  P   KR  +  + S   ++ KK K   K SK  T                                     M SG     A    G +  APG        +K +R  D  E+NLV++VVD++DE  KL  DA      V E++ Y P M++SGP LR KMQ  AKR+ + EN++K+AMEI+SLAV+ERL  +LESLK IA VR+ A K  W     G NV EKL+  REDEER+L VAAE+RV+R+KEQ E +A+++AGEA                  KEK+ALEKKRKE+SSQRDALSGLV   D+RR++ A+ K LA L PL     KSG        LPP+ +  +S G      K +G+       L++LK L PLV LGG   S  P   G +P A       Q +L +TL DC+FL ESE+NT+KSS +YKWYARL
Sbjct:  164 IPRQKLLESVARFVRDSCPQAFGIDLIREFKEWYESEFERQKAQSGRGERKVPQQQFQHVGQQQRRQVVQNKQIPLHIHQMKQQQARSAALQPPGANAKMQYSMPGTVPGRAAVGSKASGKEAQLINPHIVKKEAQLPGKTGGKSISRKTVPSRKTSSPNTPKVGASRAAPGKAPGVRSIGGKSILRPPSTLPAAHVALKGPTA--TNVPK------VSVMGGVAGKAVTGSKGLLANKLPAGLVHKVAPGTKPKGPRKAPVKNAAKTSX-----------------------------XXXXXXXXXXXXXXKTISKGSVVRQKPSLPVISGSAGAGSAAVAPGSIKRPFDAGSGSPTGSSMKKPKXXXKASKGPTNRRKAGPFPSSTDPNRPTKPQPARIDTAKGRTGPGTNMGSGGGSALATGKGGSSNSAPGGTGPGTQVRKAKRVDD--ELNLVNDVVDLDDEVDKLGEDAGVVNTEVIEIIDYDPGMLLSGPALRTKMQVTAKRYALSENISKDAMEIVSLAVQERLRNLLESLKGIARVRIEANKESWNTEYFGQNVHEKLELMREDEERSLTVAAELRVKRKKEQEEREAKKLAGEAXXXXXXXXXXXXXXXXXXKEKIALEKKRKENSSQRDALSGLVAGIDKRRKKPATGKGLAGLAPLLPPITKSGGSRTSGSSLPPIPKLVSSAGGDSMSNKSVGTNGKKIDQLEKLKALCPLVSLGGPRTSSMP---GTEPSAKKDVPKPQPKLPLTLRDCIFLMESEQNTRKSSHIYKWYARL 908          
BLAST of Gvermi6789.t2 vs. uniprot
Match: R7QKK4_CHOCR (TAF4 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QKK4_CHOCR)

HSP 1 Score: 145 bits (366), Expect = 3.080e-32
Identity = 128/327 (39.14%), Postives = 190/327 (58.10%), Query Frame = 0
Query:  428 LVDNVVDIEDEEVKLNVDANGKRQAVEEVVQYSPDMIVSGPVLRKKMQSIAKRHGIHENVNKEAMEIMSLAVRERLACILESLKTIASVRVGAEKGQWGRVETGLNVREKLKRAREDEERALQVAAEMRVRRRKEQREADARRVA----GEAAKNDKSARDSSAAAEAERKEKLALEKKRKESSSQRDALSGLVRDFDRRRRRA-------SAKPLAPL-KPLGK-----SGLPPLARRPNSDGSGRSGLKPLGSLDRLKDLGPLVKLGGK---SNSPAPRGLGRDPVAAQVRLR---VTLMDCVFLFESERNTKKSSLLYKWYARL 731
            L+ NVVD++ EE  L  D         E V Y+  ++++   L K++++ A+R+ + E+V+++AMEI+SLAV ERL  ILESLK  +SVRV A+K  W        VREKL R  E+EER+L   A++R++++KE  + +A RV+    GE  +NDK+ R    A++A RK ++A EK  + S++ + ALSG++    + RR+A       S+K L PL K  GK     S LPPL  R  S G  +     L   DR  +   L+K+GG    + S  P+G+    VA + + R   +TL DC+FL ESE+ T++S  LYKWY RL
Sbjct:  707 LLGNVVDLDYEESFLAHDEKTAGDGDMEAVGYNDGLLLTANALGKRIKAAARRNHLKESVSRDAMEIISLAVCERLKSILESLKVASSVRVDADKDLWTTAVPDETVREKLGRLFEEEERSLDEKAKLRLKKKKELADIEAMRVSKMVIGE--ENDKTPR--LVASKAGRKARIAREKSLETSNNHKKALSGVLAGIQKMRRKANFEKPLGSSKALLPLIKGSGKLQNITSILPPLPTRNVSGGIIQRRTDELDRTDRKHE--GLLKMGGPETTNRSHLPKGI----VAVRRKKRKYGLTLKDCLFLMESEQTTRRSYALYKWYGRL 1023          
BLAST of Gvermi6789.t2 vs. uniprot
Match: A0A5J4YTN7_PORPP (TAF4 domain-containing protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YTN7_PORPP)

HSP 1 Score: 65.5 bits (158), Expect = 3.350e-7
Identity = 108/396 (27.27%), Postives = 172/396 (43.43%), Query Frame = 0
Query:  391 PSGALP-----PAGPTPM----APGNPNADVVQKKVRRQV--DLKEINLVDNV-VDIEDEEVKLNVDANGKRQAVEEVVQYSPDMIVSGPVLRKKMQSIAKRHGIHENVNKEAMEIMSLAVRERLACILESLKTIASVRVGAEKGQWGRVETGL---NVREKLKRAREDEERALQVAAEMRVRRRKEQREADARRVAGEAAKNDKSARDSSAAAEAERKEKLALEKKRK-ESSSQRDA-LSGLVRDFDRRRRRASAKPLAPL------KPLGKSGLPPLARRPNSDGSGRSGLKP-----LGSLDRLKDLGPLVKLGGKSN--------------------SPAPRGLG-------RDPVAAQVRLRVTLMDCVFLFESERNTKKSSLLYKWYARL 731
            P G++P     P+G + M    + G   A V QKK  R+   + +E++++    +D+E+E+  + VD +   Q   E+       +V+   + K M+ + +R      V +E +EI+SLAVRERL  +LE L  I++ R    +  WG   T     +VR +L + R++E R L V  E R RR++E   A+   V  E    D++ R    A  AE K    +EKKR+ ES  Q +A L+ ++    +RR+ A +    P         LG   + P A     DG+   G  P      GS   + D      +  K                      +  P GLG         P     R  +++ DC+FL E +R+  KS+ L     +L
Sbjct:  611 PDGSMPGQPHLPSGTSGMVKLHSTGASAAPVAQKKAERKARTEDEELDVMYAAGIDVENEDEDVFVDEDEHTQG--ELEPEDVGKLVNSGSVEKIMERVVRRTRGVRQVRRECVEILSLAVRERLQSLLERLNQISNARQEVSRKLWGAKATTYAVKDVRGELDKLRKEEVRQLDVLMEGRKRRQQELEAAENGGVIPE----DRTPRPDDNAKRAENK--AVIEKKRQDESLKQTNATLTNILGGLKKRRKSAPSAGAPPSLAAGGSSSLGAGSVAPAAGSVGGDGN--DGKPPRLFSDAGSTGAMSDDSATASVHNKITDGEASVGSRDAAQPPLLPVRATVPAGLGGPLPLRQTQPQLQMQRDPISIRDCIFLMERDRHMNKSARLMLMMCKL 996          
The following BLAST results are available for this feature:
BLAST of Gvermi6789.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IXL1_9FLOR2.900e-16047.33TAF4 domain-containing protein n=2 Tax=Gracilariop... [more]
R7Q6Z9_CHOCR8.760e-7134.94TAF4 domain-containing protein n=1 Tax=Chondrus cr... [more]
R7QKK4_CHOCR3.080e-3239.14TAF4 domain-containing protein n=1 Tax=Chondrus cr... [more]
A0A5J4YTN7_PORPP3.350e-727.27TAF4 domain-containing protein n=1 Tax=Porphyridiu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 589..609
NoneNo IPR availableCOILSCoilCoilcoord: 535..555
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 560..666
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 325..414
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 325..362
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 236..250
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 236..268
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 560..628
IPR007900Transcription initiation factor TFIID component TAF4, C-terminalPFAMPF05236TAF4coord: 433..726
e-value: 4.1E-17
score: 62.9
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 465..512
e-value: 1.2E-6
score: 30.1
IPR045144Transcription initiation factor TFIID component TAF4PANTHERPTHR15138TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4coord: 451..729

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2304744..2306951 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6789.t2Gvermi6789.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_88 2304744..2306951 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6789.t2 ID=Gvermi6789.t2|Name=Gvermi6789.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=736bp
MITRPQLLQSVSNFVKQSTPAAKDVDVIKDFKAWYEHEYEIQKQRSRHTQ
AQLQNQVRHQPTSGQINRGSNVPLHSGSQTIRTSIAPQTVSTARGQVKQE
PQRSNIVRTAGKSIGAKPEPMRLVPGARAVVPKNNGGRAVSADNIGGRQF
PVNGVPRPPPMPTPASSNLMMHSSVTPQGRVNQVVASKFPDGRPNSLPHT
VAQKAVGSVPQVAGKSIGGKSLLHTNAIIQAKQKQLRRPPQKSVAKTTIR
TSPKGAGKGKSPAAYPFKTAVHPAAHAGAHVGAHVGAHVGAHTGAHAGVH
AGIRPGGNVQISFAPVQLQAQLPAKRILENNTSSSPSNTAKKVKTAPKVS
KTTTSKKKPSPAVANSLLSKGARPPILKPDQRNKGAKRPMPSGALPPAGP
TPMAPGNPNADVVQKKVRRQVDLKEINLVDNVVDIEDEEVKLNVDANGKR
QAVEEVVQYSPDMIVSGPVLRKKMQSIAKRHGIHENVNKEAMEIMSLAVR
ERLACILESLKTIASVRVGAEKGQWGRVETGLNVREKLKRAREDEERALQ
VAAEMRVRRRKEQREADARRVAGEAAKNDKSARDSSAAAEAERKEKLALE
KKRKESSSQRDALSGLVRDFDRRRRRASAKPLAPLKPLGKSGLPPLARRP
NSDGSGRSGLKPLGSLDRLKDLGPLVKLGGKSNSPAPRGLGRDPVAAQVR
LRVTLMDCVFLFESERNTKKSSLLYKWYARLPNGK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007900TAF4_C
IPR009072Histone-fold
IPR045144TAF4