Gvermi6787.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6787.t1
Unique NameGvermi6787.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length155
Homology
BLAST of Gvermi6787.t1 vs. uniprot
Match: A0A2V3IXI8_9FLOR (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXI8_9FLOR)

HSP 1 Score: 263 bits (673), Expect = 1.840e-88
Identity = 122/150 (81.33%), Postives = 138/150 (92.00%), Query Frame = 0
Query:    7 MRTVG---RLAPRTSRMFSTNPDHTINVLSGIPEKHAMRRVRIYRPAKVATQQGRGSLTQMWKMSFEKLEGDDRWTNPLMGWTSTGDPLSNMGMSFPSKEAAMHYAERNGYEFSVVEPAEEKQHVKPIAPFKRSMVHHWRHSGTPVYDSD 153
            MR +G   RLAPR +R+ STN DHTINVLSGIP+KHA RRVRI+RPAKVATQQGRGS+TQMWKM+FEK+EGDDRWTNPLMGWTSTGDPLSNMGM+FP+KEAA+ YAERNGY F+VVEPA+EK H+KPIAPFKR+MVHHWRHSGTPVY+ D
Sbjct:    4 MRGIGNLRRLAPRATRLMSTNSDHTINVLSGIPDKHAARRVRIFRPAKVATQQGRGSITQMWKMTFEKIEGDDRWTNPLMGWTSTGDPLSNMGMAFPTKEAAIQYAERNGYGFTVVEPAQEKPHLKPIAPFKRAMVHHWRHSGTPVYEGD 153          
BLAST of Gvermi6787.t1 vs. uniprot
Match: R7QMJ9_CHOCR (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMJ9_CHOCR)

HSP 1 Score: 240 bits (612), Expect = 3.520e-79
Identity = 112/153 (73.20%), Postives = 129/153 (84.31%), Query Frame = 0
Query:    1 MSSSQWMRTVGRLAPRTSRMFSTNPDHTINVLSGIPEKHAMRRVRIYRPAKVATQQGRGSLTQMWKMSFEKLEGDDRWTNPLMGWTSTGDPLSNMGMSFPSKEAAMHYAERNGYEFSVVEPAEEKQHVKPIAPFKRSMVHHWRHSGTPVYDSD 153
            MS S W  ++ RLAP  SR  S++ D ++NVLSGIP+KHA RRVRI+RPAKVATQQGRG LTQMW++ FEK+EGDDRWTNPLMGWTSTGDPLSNMGM FP+KEAAM YAERNGYE+ V+EP EEKQ V+ IAPFKR+MVHHWRH   PVY+ D
Sbjct:    1 MSLSGWRASMTRLAPMASRQLSSSRDASVNVLSGIPDKHAARRVRIHRPAKVATQQGRGGLTQMWRLQFEKIEGDDRWTNPLMGWTSTGDPLSNMGMPFPTKEAAMKYAERNGYEYKVIEPEEEKQQVRKIAPFKRAMVHHWRHEA-PVYEGD 152          
BLAST of Gvermi6787.t1 vs. uniprot
Match: M1VJG6_CYAM1 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=2 Tax=cellular organisms TaxID=131567 RepID=M1VJG6_CYAM1)

HSP 1 Score: 161 bits (408), Expect = 8.150e-48
Identity = 78/152 (51.32%), Postives = 101/152 (66.45%), Query Frame = 0
Query:    2 SSSQWMRTVGRLAPRTS-RMFSTNPDHTINVLSGIPEKHAMRRVRIYRPAKVATQQGRGSLTQMWKMSFEKLEGDDRWTNPLMGWTSTGDPLSNMGMSFPSKEAAMHYAERNGYEFSVVEPAEEKQHVKPIAPFKRSMVHHWRHSGTPVYDS 152
            +S  W   + R  P +  R    +    +  +SG P++H  RR+RIYRPA+ ATQQGRGS TQ+WK  FE  +G  RWTNPLMGW S+GDPLS   ++F SKEAA+ YAE+ G+++ V +P EE  H + IAPF RSMVHHWRH G P Y +
Sbjct:    8 ASGLWKHILQRQNPLSGQRRLFEDTRGALGRVSGTPDEHRSRRLRIYRPARSATQQGRGSRTQLWKAEFEVQDGFGRWTNPLMGWYSSGDPLSQTTLTFSSKEAAIQYAEKYGFQYVVYDPHEEPLHERKIAPFTRSMVHHWRHEGIPRYST 159          
BLAST of Gvermi6787.t1 vs. uniprot
Match: A0A7S3EMI8_9RHOD (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EMI8_9RHOD)

HSP 1 Score: 160 bits (406), Expect = 2.290e-47
Identity = 74/132 (56.06%), Postives = 96/132 (72.73%), Query Frame = 0
Query:   24 NPDHTINVLSGIPEKHAMRRVRIYRPAKVATQQGRGSLTQMWKMSFEKLEGD-DRWTNPLMGWTSTGDPLSNMGMSFPSKEAAMHYAERNGYEFSVVEPAEEKQHVKPIAPFKRSMVHHWRHSGTPVYDSDK 154
            NP   I +LSG PE+H  R VRIYRPA+ A QQG+ S    W + FEK +GD DRWTNPLMGWTSTGDPL+N+ +SFP++EAA+ YA RNG+ +++ +   EK++V+    F RSMVH WRH+  PVY+ DK
Sbjct:   59 NPHDKIFMLSGAPEEHVSRHVRIYRPARSAMQQGKKSKNATWHLKFEKTDGDVDRWTNPLMGWTSTGDPLTNLNVSFPTQEAAVEYAVRNGFHYTIEDRLPEKENVRKFQAFGRSMVHQWRHNQIPVYEDDK 190          
BLAST of Gvermi6787.t1 vs. uniprot
Match: M2Y480_GALSU (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y480_GALSU)

HSP 1 Score: 160 bits (404), Expect = 3.400e-47
Identity = 68/127 (53.54%), Postives = 93/127 (73.23%), Query Frame = 0
Query:   28 TINVLSGIPEKHAMRRVRIYRPAKVATQQGRGSLTQMWKMSFEKLEGDDRWTNPLMGWTSTGDPLSNMGMSFPSKEAAMHYAERNGYEFSVVEPAEEKQHVKPIAPFKRSMVHHWRHSGTPVYDSDK 154
            ++ V+SG+PEKH  RRV+IY+P + ATQQGRGS   +WK+ FEKLE  DRWTNPLMGWTSTGDPLS   + FP +E+A+ YA R G  + + EP EE++H++    + +SMVH W H+G P Y+ ++
Sbjct:   54 SLGVISGVPEKHLKRRVKIYKPPRTATQQGRGSKYAVWKLEFEKLEEGDRWTNPLMGWTSTGDPLSQTAVYFPDRESAIEYARRYGLSYIIYEPEEEEEHIRSFNAYGKSMVHQWNHNGIPKYEDEE 180          
BLAST of Gvermi6787.t1 vs. uniprot
Match: A0A7S1TKT9_9RHOD (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TKT9_9RHOD)

HSP 1 Score: 156 bits (395), Expect = 1.030e-45
Identity = 70/128 (54.69%), Postives = 95/128 (74.22%), Query Frame = 0
Query:   26 DHTINVLSGIPEKHAMRRVRIYRPAKVATQQGRGSLTQMWKMSFEKLEGDDRWTNPLMGWTSTGDPLSNMGMSFPSKEAAMHYAERNGYEFSVVEPAEEKQHVKPIAPFKRSMVHHWRHSGTPVYDSD 153
            D  + V +G P +H  RR+RIYRPA+V+TQQG+G+ + +W+  FEK+EG DRWTNPLMGWTST DPLSN  +SF SKE A+ YA R GY+++V EP   K++++  + + +SMVH WRH   PV+DSD
Sbjct:   60 DTDLGVATGHPTEHLQRRLRIYRPARVSTQQGKGATSVLWRAEFEKIEGADRWTNPLMGWTSTADPLSNTSLSFASKEEAIEYATRYGYKYTVFEPEHSKENLRKFSAYGKSMVHQWRHK-IPVFDSD 186          
BLAST of Gvermi6787.t1 vs. uniprot
Match: A0A5J4YTN4_PORPP (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YTN4_PORPP)

HSP 1 Score: 152 bits (384), Expect = 1.460e-44
Identity = 70/147 (47.62%), Postives = 99/147 (67.35%), Query Frame = 0
Query:    5 QWMRTVGRLAPRTSRMFSTNPDHTINVLSGIPEKHAMRRVRIYRPAKVATQQGRGSLTQMWKMSFEKLEGDDRWTNPLMGWTSTGDPLSNMGMSFPSKEAAMHYAERNGYEFSVVEPAEEKQHVKPIAPFKRSMVHHWRHSGTPVYD 151
            QW     R+  R  R  +T+ +  +  +SG+PE+H  RR+RI++PA   TQQG+G  T++W   +EKLEG DRWTNPLMGWTSTGDP+SN+ + FP KE+A+ YAE+ GY++ V E  +  ++V+    + +SMVH WRH   P YD
Sbjct:    6 QWRHA--RVLLRAQRGVTTDENAAMGAISGVPEEHLKRRLRIFQPASATTQQGKGVRTKLWVAIYEKLEGGDRWTNPLMGWTSTGDPVSNLRLEFPDKESAIQYAEKYGYKYVVSEREQRSENVRKFGAYGKSMVHQWRHK-PPKYD 149          
BLAST of Gvermi6787.t1 vs. uniprot
Match: A0A7J7IMA9_9RHOD (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IMA9_9RHOD)

HSP 1 Score: 150 bits (380), Expect = 1.520e-43
Identity = 73/141 (51.77%), Postives = 94/141 (66.67%), Query Frame = 0
Query:   12 RLAPRTSRMFSTNPDHTINVLSGIPEKHAMRRVRIYRPAKVATQQGRGSLTQMWKMSFEKLEGDDRWTNPLMGWTSTGDPLSNMGMSFPSKEAAMHYAERNGYEFSVVEPAEEKQHVKPIAPFKRSMVHHWRHSGTPVYDS 152
            +L  R  R FS      +  +SG P++H  RR+RI+RPA+   QQGRGS TQ+WK  FE  +G  RWTNPLMGW S+GDPLS   ++F SKEAA+ YAE+ G+++ V +P EE  H + I PF R+MVHHWRH   P Y S
Sbjct:   22 QLTRRHWRRFSEEHG-ALGRVSGTPDEHRTRRLRIFRPARSPVQQGRGSRTQLWKAEFEVQDGFGRWTNPLMGWYSSGDPLSQTTLTFSSKEAAIQYAEKYGFQYIVYDPHEEPIHERKIVPFGRAMVHHWRHEAIPQYSS 161          
BLAST of Gvermi6787.t1 vs. uniprot
Match: A0A7S1TN47_9RHOD (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TN47_9RHOD)

HSP 1 Score: 129 bits (325), Expect = 1.140e-35
Identity = 57/103 (55.34%), Postives = 78/103 (75.73%), Query Frame = 0
Query:   51 KVATQQGRGSLTQMWKMSFEKLEGDDRWTNPLMGWTSTGDPLSNMGMSFPSKEAAMHYAERNGYEFSVVEPAEEKQHVKPIAPFKRSMVHHWRHSGTPVYDSD 153
            +V+TQQG+G+ + +W+  FEK+EG DRWTNPLMGWTST DPLSN  +SF SKE A+ YA R GY+++V EP   K++++  + + +SMVH WRH   PV+DSD
Sbjct:   42 RVSTQQGKGATSVLWRAEFEKIEGADRWTNPLMGWTSTADPLSNTSLSFASKEEAIEYATRYGYKYTVFEPEHSKENLRKFSAYGKSMVHQWRHK-IPVFDSD 143          
BLAST of Gvermi6787.t1 vs. uniprot
Match: A0A7S0G1Y0_9RHOD (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial (Fragment) n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G1Y0_9RHOD)

HSP 1 Score: 120 bits (301), Expect = 8.220e-32
Identity = 56/103 (54.37%), Postives = 75/103 (72.82%), Query Frame = 0
Query:   24 NPDHTINVLSGIPEKHAMRRVRIYRPAKVATQQGRGSLTQMWKMSFEKLEGD-DRWTNPLMGWTSTGDPLSNMGMSFPSKEAAMHYAERNGYEFSVVEPAEEK 125
            NP + I +LSG P++H  R VRIYRPA+ A QQG+ S    W + F K +GD DRWTNPLMGWTSTGDPL+N+ +SF ++EAA+ YA RNG+ +++ +   EK
Sbjct:   62 NPHNRIFMLSGAPDEHVSRHVRIYRPARSAMQQGKKSKNATWHLEFAKTDGDVDRWTNPLMGWTSTGDPLTNLNVSFRTQEAAVKYAIRNGFHYTIEDRLPEK 164          
The following BLAST results are available for this feature:
BLAST of Gvermi6787.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IXI8_9FLOR1.840e-8881.33NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
R7QMJ9_CHOCR3.520e-7973.20NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
M1VJG6_CYAM18.150e-4851.32NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A7S3EMI8_9RHOD2.290e-4756.06NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
M2Y480_GALSU3.400e-4753.54NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A7S1TKT9_9RHOD1.030e-4554.69NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A5J4YTN4_PORPP1.460e-4447.62NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A7J7IMA9_9RHOD1.520e-4351.77NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A7S1TN47_9RHOD1.140e-3555.34NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A7S0G1Y0_9RHOD8.220e-3254.37NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038532NADH dehydrogenase ubiquinone Fe-S protein 4-like superfamilyGENE3D3.30.160.190atu1810 like domaincoord: 39..124
e-value: 1.0E-30
score: 107.3
IPR006885NADH dehydrogenase ubiquinone Fe-S protein 4, mitochondrialPFAMPF04800ETC_C1_NDUFA4coord: 43..129
e-value: 8.9E-29
score: 99.6
IPR006885NADH dehydrogenase ubiquinone Fe-S protein 4, mitochondrialPANTHERPTHR12219NADH-UBIQUINONE OXIDOREDUCTASEcoord: 27..127
NoneNo IPR availablePANTHERPTHR12219:SF8NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 4, MITOCHONDRIALcoord: 27..127

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2280185..2280798 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6787.t1Gvermi6787.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_88 2280185..2280798 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6787.t1 ID=Gvermi6787.t1|Name=Gvermi6787.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=155bp
MSSSQWMRTVGRLAPRTSRMFSTNPDHTINVLSGIPEKHAMRRVRIYRPA
KVATQQGRGSLTQMWKMSFEKLEGDDRWTNPLMGWTSTGDPLSNMGMSFP
SKEAAMHYAERNGYEFSVVEPAEEKQHVKPIAPFKRSMVHHWRHSGTPVY
DSDK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038532NDUFS4-like_sf
IPR006885NADH_UbQ_FeS_4_mit