Gvermi6764.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6764.t1
Unique NameGvermi6764.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length248
Homology
BLAST of Gvermi6764.t1 vs. uniprot
Match: A0A2V3J6Q8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6Q8_9FLOR)

HSP 1 Score: 283 bits (725), Expect = 1.990e-93
Identity = 137/226 (60.62%), Postives = 172/226 (76.11%), Query Frame = 0
Query:   22 RYIRRTGLNIPVVISNELRGLIGGNDISNRSQILSDLGKYIRENNLYINGEKKRVLCDERLSAVFKVTGEVSSRDFFRLLKPHLTDPSALGPEYETRAKEYFEKYLEERGARASWLAPRRYTDPRGKNSIAAQKELRKQRQGMFAEVYIDPCLRPLCNGKSYLSRPDALKAVWAYIKKHGLQDARNRRRIRVSDTLRDALRLPEIEWLDSFKLGSYVFRLMSKSEK 247
            +Y+R+TG+N P+V+S+ELR L G  +ISNRSQ+LS++GKYIR NNLY    +K V+CD  LSA+    G +  +D  R +K HLTDPS +GPEYE RA ++FEKYL  RGA ASW AP R  DPRG NS  AQ+ LR++ QGMFAEVYI+ CLRPLCNG +Y+SRP  LK+VWAYIK + LQD   RRRI VS+TLRDALRLP++EW+D+F+LG YVF+L S   K
Sbjct:   23 KYVRKTGMNAPLVLSDELRALTGLGEISNRSQVLSEIGKYIRANNLYAMEGRKFVVCDSLLSALLNTEGTILFQDIQRFIKHHLTDPSEMGPEYEARAIDFFEKYLAARGALASWHAPHRTKDPRGLNSAEAQRRLRERGQGMFAEVYIEQCLRPLCNGNTYMSRPAILKSVWAYIKNNNLQDPSKRRRILVSETLRDALRLPDVEWIDTFQLGGYVFKLTSSRRK 248          
BLAST of Gvermi6764.t1 vs. uniprot
Match: A0A7S1T5Y0_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T5Y0_9RHOD)

HSP 1 Score: 76.3 bits (186), Expect = 5.170e-13
Identity = 59/202 (29.21%), Postives = 96/202 (47.52%), Query Frame = 0
Query:   32 PVVISNELRGLIGGNDISNRSQILSDLGKYIRENNLYINGEKKRVLCDERLSAVFKVTGEVSSRDFFRLLKPH------LTDPSALGPEYETRA----KEYFEKYLEERGARA------SWLAPRRYTDPRGKNSIAAQKELRKQRQGMFAEVYIDPCLRPLCNGKSYLSRPDALKAVWAYIKKHGLQDARNRRRIRVSDTL 217
            PVV+ +     + G D+  R++I   +  Y +E  L  +G+ + ++ DERL   F+       R+   LL         +  P   G E+  RA    +E  E+  E+ G+RA        +  +  + PR K+   +  ELR   +G+F  + +   L+ L  G   +SRPD +KA+W YI+KH LQD +N R  R  + L
Sbjct:   18 PVVVGHPKLQEVVGADLLPRNEITRRVAAYAKEQGLIHSGDPRTIVLDERLREAFR-------RETLTLLGVSAAVAGLVKKPEEAGAEFVERALRMEQEMIEEDEEKGGSRAMKKTGKGRVEDKALSTPRRKSKEQSTSELRASGKGIFVPLAVSETLQELV-GAPTMSRPDIMKAIWVYIRKHELQDPKNGRLFRCDEKL 211          
BLAST of Gvermi6764.t1 vs. uniprot
Match: A0A1S4BHN3_TOBAC (upstream activation factor subunit spp27-like isoform X1 n=12 Tax=Nicotiana TaxID=4085 RepID=A0A1S4BHN3_TOBAC)

HSP 1 Score: 74.3 bits (181), Expect = 7.180e-12
Identity = 63/227 (27.75%), Postives = 112/227 (49.34%), Query Frame = 0
Query:   25 RRTGLNIPVVISNELRGLIGGNDISNRSQILSDLGKYIRENNLYINGEKKRVLCDERLSAVFKVTGEVSSRDFFRLLKPHL-----TDPSALGPEYETRAKEYFEKYLEERGARASWLAPRRYTDPRGKNSIAAQKELRKQR--QGMFAEVYI-DPCLRPLCNGKSYLSRPDALKAVWAYIKKHGLQDARNRRRIRVSDTLRDALRLPEIEWLDSFKLGSYVFRLMS 243
            ++ G N P  +S +L+ L+G +++  R +++  +  YIRE NL     K+++LCDE LS +F+    +      ++L  H+      D S       ++ K   +K L ++G   +   P+             QKE R++R   G  A V + D  ++   NG+  L+R D +K +W YIK++ LQD  +++ I   +      RL E+  +DSF  G  V +L++
Sbjct:  117 KKGGFNKPCALSPQLQKLVGESELG-RPEVVKKIWAYIREKNLQNPQNKRKILCDEVLSEIFRAK-TIDMFQMNKVLSKHIWPIDEEDGSFSLTHPASQVKSSVKKRLPKQGREEALDEPK-------------QKEKRQKRGGSGFLAPVRLSDALVKFFGNGEKALTRADVIKRIWQYIKENELQDPSDKKTIICDE------RLKELFQVDSFH-GFTVTKLLT 321          
BLAST of Gvermi6764.t1 vs. uniprot
Match: A0A1R3HUW5_COCAP (Uncharacterized protein n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3HUW5_COCAP)

HSP 1 Score: 74.7 bits (182), Expect = 9.830e-12
Identity = 65/248 (26.21%), Postives = 117/248 (47.18%), Query Frame = 0
Query:    3 RDTNTCLPPPIQGQKSPEPRYIRRTGLNIPVV--ISNELRGLIGGNDISNRSQILSDLGKYIRENNLYINGEKKRVLCDERLSAVFKVTGEVSSRDFFRLLKPHLTDPSALGPEYETRAKEYFEKYLEERGARASWLAPRRYTDPRGKNSIAAQKELRKQRQGMFAEVYI-DPCLRPLCNGKSYLSRPDALKAVWAYIKKHGLQDARNRRRIRVSDTLRDALRLPEIEWLDSFKLGSYVFRLMSKSEK 247
            RD NT      +  K    + +++ G     +  +S +L+  IG ++++ R++++  L  YIRE NL    +K+ +LCDE L A+F+V   ++     + L  H+   +    + +    E   K   ERGA           +P+ K     +K  +K   G  A + + D  ++    G++ LSR D +K +W YIK++ LQD  ++RRI   D L++   L E++    F +   +     K E+
Sbjct:  277 RDGNTRRSKNKRSSKVDNHKAVKKRGGGFTKLCSLSPQLQAFIGESELA-RTEVVKRLWNYIREKNLQNPKDKRNILCDESLRAIFRVN-TINMFQMNKALSKHIWPLNEEDAQADLAKSERKPKQGRERGA----------YEPKQK-----EKRQKKGPSGFLAPLPLSDALMKFFGTGENALSRADVVKRMWEYIKQNDLQDPSDKRRIICDDKLKE---LFEVDSFTGFTISKLLTTHFIKMEE 504          
BLAST of Gvermi6764.t1 vs. uniprot
Match: A0A7J9GPB7_9ROSI (Uncharacterized protein n=1 Tax=Gossypium harknessii TaxID=34285 RepID=A0A7J9GPB7_9ROSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.260e-11
Identity = 58/214 (27.10%), Postives = 107/214 (50.00%), Query Frame = 0
Query:   35 ISNELRGLIGGNDISNRSQILSDLGKYIRENNLYINGEKKRVLCDERLSAVFKVTGEVSSRDFFRLLKPHLTDPSALGPEYETRAKEYFEKYLEERGARASWLAPRRYTDPRGKNSIAAQKELRKQRQGMFAEVYI-DPCLRPLCNGKSYLSRPDALKAVWAYIKKHGLQDARNRRRIRVSDTLRDALRLPEIEWLDSFKLGSYVFRLMSKSEK 247
            +S +L+  IG ++++ R++++  L  YIRE NL    +K+ VLCD+ L A+F+V   ++     + L  H+   +    + ++   E   K   ER A           +P+ K     +K+ +K   G  A + + D  ++    G++ LSR D +K +W YIK++ LQD  ++RRI   D L++   L E++  + F +   +     K E+
Sbjct:   21 LSPQLQAFIGESELA-RTEVVKRLWTYIREKNLQDPKDKRNVLCDDSLYALFRVKS-INMFQMNKALSKHIWPLNEEEVQADSAKTERKSKQARERVA----------DEPKQK-----EKKQKKGASGFLAPLPLSDALVKFFATGENALSRADVVKKMWEYIKQNDLQDPSDKRRILCDDKLKE---LFEVDSFNGFAMTKLLTTHFIKMEQ 214          
BLAST of Gvermi6764.t1 vs. uniprot
Match: A0A6P6AEP3_DURZI (DNA ligase 1 isoform X3 n=1 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P6AEP3_DURZI)

HSP 1 Score: 73.6 bits (179), Expect = 1.840e-11
Identity = 56/201 (27.86%), Postives = 101/201 (50.25%), Query Frame = 0
Query:   35 ISNELRGLIGGNDISNRSQILSDLGKYIRENNLYINGEKKRVLCDERLSAVFKVTGEVSSRDFFRLLKPHLTDPSALGPEYETRAKEYFEKYLEERGARASWLAPRRYTDPRGKNSIAAQKELRKQRQGMFAEVYI-DPCLRPLCNGKSYLSRPDALKAVWAYIKKHGLQDARNRRRIRVSDTLRDALRLPEIEWLDSFKL 234
            +S +L+  IG  +++ R++++  L  YIRE NL     ++ +LCDE L A+F+V   ++     + L  H+   +      ++   E   K   ERGA           +P+ K     +K+ +K   G  A + + D  ++    G++ LSR D +K +W YIK++ LQD  ++RRI   D L++   L E++  + F +
Sbjct:  198 LSPQLQAFIGEPELA-RTEVVKRLWTYIREKNLQDPNNRRNILCDESLHALFRVNS-INMFQMNKALSKHIWPLNEEDAHADSTKMERKSKQARERGA----------NEPKQK-----EKKQKKAGSGFLAPLPLSDALVKFFGTGENALSRADVVKRMWEYIKQNDLQDPSDKRRILCDDKLKE---LFEVDSFNGFTI 378          
BLAST of Gvermi6764.t1 vs. uniprot
Match: A0A6P6AEQ8_DURZI (DNA ligase 1 isoform X2 n=2 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P6AEQ8_DURZI)

HSP 1 Score: 73.6 bits (179), Expect = 2.080e-11
Identity = 56/201 (27.86%), Postives = 101/201 (50.25%), Query Frame = 0
Query:   35 ISNELRGLIGGNDISNRSQILSDLGKYIRENNLYINGEKKRVLCDERLSAVFKVTGEVSSRDFFRLLKPHLTDPSALGPEYETRAKEYFEKYLEERGARASWLAPRRYTDPRGKNSIAAQKELRKQRQGMFAEVYI-DPCLRPLCNGKSYLSRPDALKAVWAYIKKHGLQDARNRRRIRVSDTLRDALRLPEIEWLDSFKL 234
            +S +L+  IG  +++ R++++  L  YIRE NL     ++ +LCDE L A+F+V   ++     + L  H+   +      ++   E   K   ERGA           +P+ K     +K+ +K   G  A + + D  ++    G++ LSR D +K +W YIK++ LQD  ++RRI   D L++   L E++  + F +
Sbjct:  240 LSPQLQAFIGEPELA-RTEVVKRLWTYIREKNLQDPNNRRNILCDESLHALFRVNS-INMFQMNKALSKHIWPLNEEDAHADSTKMERKSKQARERGA----------NEPKQK-----EKKQKKAGSGFLAPLPLSDALVKFFGTGENALSRADVVKRMWEYIKQNDLQDPSDKRRILCDDKLKE---LFEVDSFNGFTI 420          
BLAST of Gvermi6764.t1 vs. uniprot
Match: A0A0D2SMM3_GOSRA (Uncharacterized protein n=2 Tax=Gossypium TaxID=3633 RepID=A0A0D2SMM3_GOSRA)

HSP 1 Score: 72.0 bits (175), Expect = 7.290e-11
Identity = 61/226 (26.99%), Postives = 111/226 (49.12%), Query Frame = 0
Query:   25 RRTGLNIPVVISNELRGLIGGNDISNRSQILSDLGKYIRENNLYINGEKKRVLCDERLSAVFKVTGEVSSRDFFRLLKPHL--TDPSALGPEYETRAKEYFEKYLEERGARASWLAPRRYTDPRGKNSIAAQKELRKQRQGMFAEVYI-DPCLRPLCNGKSYLSRPDALKAVWAYIKKHGLQDARNRRRIRVSDTLRDALRLPEIEWLDSFKLGSYVFRLMSKSEK 247
            RR G      +S +L+  IG ++++ R++++  L  YIRE NL    +K+ VLCD+ L A+F+V   ++     + L  H+   +   +  + ++   E   K   ER A           +P+ K     +K+ +K   G  A + + D  ++    G++ LSR D +K +W YIK++ LQD  ++RRI   D L++   L E++  + F +   +     K E+
Sbjct:  248 RRGGFTKLCSLSPQLQAFIGESELA-RTEVVKRLWTYIREKNLQDPKDKRNVLCDDSLYALFRVKS-INMFQMNKALSKHIWPLNEEEVTVQADSAKTERKSKQARERVA----------DEPKQK-----EKKQKKGASGFLAPLPLSDALVKFFATGENALSRADVVKKMWEYIKQNDLQDPSDKRRILCDDKLKE---LFEVDSFNGFAMTKLLTTHFIKMEQ 453          
BLAST of Gvermi6764.t1 vs. uniprot
Match: A0A1U8LJ87_GOSHI (YTH domain-containing protein 1 isoform X1 n=53 Tax=Gossypium TaxID=3633 RepID=A0A1U8LJ87_GOSHI)

HSP 1 Score: 70.9 bits (172), Expect = 1.940e-10
Identity = 58/216 (26.85%), Postives = 108/216 (50.00%), Query Frame = 0
Query:   35 ISNELRGLIGGNDISNRSQILSDLGKYIRENNLYINGEKKRVLCDERLSAVFKVTGEVSSRDFFRLLKPHL--TDPSALGPEYETRAKEYFEKYLEERGARASWLAPRRYTDPRGKNSIAAQKELRKQRQGMFAEVYI-DPCLRPLCNGKSYLSRPDALKAVWAYIKKHGLQDARNRRRIRVSDTLRDALRLPEIEWLDSFKLGSYVFRLMSKSEK 247
            +S +L+  IG ++++ R++++  L  YIRE NL    +K+ VLCD+ L A+F+V   ++     + L  H+   +   +  + ++   E   K   ER A           +P+ K     +K+ +K   G  A + + D  ++    G++ LSR D +K +W YIK++ LQD  ++RRI   D L++   L E++  + F +   +     K E+
Sbjct:  320 LSPQLQAFIGESELA-RTEVVKRLWTYIREKNLQDPKDKRNVLCDDSLYALFRVKS-INMFQMNKALSKHIWPLNEEEVAVQADSAKTERKSKQARERVAE----------EPKQK-----EKKQKKGASGFLAPLPLSDALVKFFATGENALSRADVVKKMWEYIKQNDLQDPSDKRRILCDDKLKE---LFEVDSFNGFAMTKLLTTHFIKMEQ 515          
BLAST of Gvermi6764.t1 vs. uniprot
Match: A0A4S4CYX2_CAMSI (Uncharacterized protein n=5 Tax=Camellia sinensis TaxID=4442 RepID=A0A4S4CYX2_CAMSI)

HSP 1 Score: 70.1 bits (170), Expect = 2.250e-10
Identity = 66/228 (28.95%), Postives = 113/228 (49.56%), Query Frame = 0
Query:   25 RRTGLNIPVVISNELRGLIGGNDISNRSQILSDLGKYIRENNLYINGEKKRVLCDERLSAVFKVTGEVSSRDFFRL---LKPHLTDPSALGPEYETRAKEYFEKYLEERGAR-ASWLAPRRYTDPRGKNSIAAQKELRKQRQGMFAEVYI-DPCLRPLCNGKSYLSRPDALKAVWAYIKKHGLQDARNRRRIRVSDTLRDALRLPEIEWLDSFKLGSYVFRLMSKSEK 247
            R  G N P  +S +L+ L+G  +++ R +++  +  +IRE +L     ++++LCDE L A+F+V    +S D F++   L  H+          ++R KE   K   E   R  S+  P    +P  K  +  QK   K+  G  A + + D  +     G+S LSR D +K +W YIKK+ LQD  ++RRI   + L++   L E++    F +   +     K+E+
Sbjct:  122 RGGGFNKPCGLSPQLQKLVGVPELA-RPEVVKKIWAHIREKDLQDPKNRRKILCDEALRAIFRV----NSIDMFQMNKVLSKHIWPIDEEDVPVKSRQKEKQSKRGREGENRNLSFKGP---NEPDRK--VKQQKG--KKGSGFLAPLPLSDALVNFFGTGESELSRADVVKRMWEYIKKNDLQDPSDKRRILCDEKLKE---LFEVDSFHGFTVSKLLAAHFIKAEQ 334          
The following BLAST results are available for this feature:
BLAST of Gvermi6764.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J6Q8_9FLOR1.990e-9360.62Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A7S1T5Y0_9RHOD5.170e-1329.21Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A1S4BHN3_TOBAC7.180e-1227.75upstream activation factor subunit spp27-like isof... [more]
A0A1R3HUW5_COCAP9.830e-1226.21Uncharacterized protein n=1 Tax=Corchorus capsular... [more]
A0A7J9GPB7_9ROSI1.260e-1127.10Uncharacterized protein n=1 Tax=Gossypium harkness... [more]
A0A6P6AEP3_DURZI1.840e-1127.86DNA ligase 1 isoform X3 n=1 Tax=Durio zibethinus T... [more]
A0A6P6AEQ8_DURZI2.080e-1127.86DNA ligase 1 isoform X2 n=2 Tax=Durio zibethinus T... [more]
A0A0D2SMM3_GOSRA7.290e-1126.99Uncharacterized protein n=2 Tax=Gossypium TaxID=36... [more]
A0A1U8LJ87_GOSHI1.940e-1026.85YTH domain-containing protein 1 isoform X1 n=53 Ta... [more]
A0A4S4CYX2_CAMSI2.250e-1028.95Uncharacterized protein n=5 Tax=Camellia sinensis ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019835SWIB domainSMARTSM00151swib_2coord: 29..110
e-value: 0.0026
score: 15.9
coord: 164..247
e-value: 1.5E-4
score: 29.0
IPR003121SWIB/MDM2 domainPFAMPF02201SWIBcoord: 170..221
e-value: 1.6E-11
score: 43.9
coord: 32..105
e-value: 2.6E-14
score: 52.8
IPR003121SWIB/MDM2 domainPROSITEPS51925SWIB_MDM2coord: 28..107
score: 17.122971
IPR003121SWIB/MDM2 domainPROSITEPS51925SWIB_MDM2coord: 163..244
score: 15.4401
IPR036885SWIB/MDM2 domain superfamilyGENE3D1.10.245.10SWIB/MDM2 domaincoord: 158..247
e-value: 3.9E-11
score: 44.8
coord: 24..114
e-value: 1.6E-14
score: 55.6
IPR036885SWIB/MDM2 domain superfamilySUPERFAMILY47592SWIB/MDM2 domaincoord: 25..113
IPR036885SWIB/MDM2 domain superfamilySUPERFAMILY47592SWIB/MDM2 domaincoord: 159..238
NoneNo IPR availablePANTHERPTHR13844SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY Dcoord: 26..108
coord: 152..222
NoneNo IPR availableCDDcd10567SWIB-MDM2_likecoord: 33..105
e-value: 5.34558E-13
score: 60.6349
NoneNo IPR availableCDDcd10567SWIB-MDM2_likecoord: 180..238
e-value: 2.39018E-15
score: 66.7981

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2213409..2214152 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6764.t1Gvermi6764.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_88 2213409..2214152 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6764.t1 ID=Gvermi6764.t1|Name=Gvermi6764.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=248bp
MNRDTNTCLPPPIQGQKSPEPRYIRRTGLNIPVVISNELRGLIGGNDISN
RSQILSDLGKYIRENNLYINGEKKRVLCDERLSAVFKVTGEVSSRDFFRL
LKPHLTDPSALGPEYETRAKEYFEKYLEERGARASWLAPRRYTDPRGKNS
IAAQKELRKQRQGMFAEVYIDPCLRPLCNGKSYLSRPDALKAVWAYIKKH
GLQDARNRRRIRVSDTLRDALRLPEIEWLDSFKLGSYVFRLMSKSEK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019835SWIB_domain
IPR003121SWIB_MDM2_domain
IPR036885SWIB_MDM2_dom_sf