Gvermi6753.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6753.t1
Unique NameGvermi6753.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length534
Homology
BLAST of Gvermi6753.t1 vs. uniprot
Match: A0A2V3J501_9FLOR (F-box domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J501_9FLOR)

HSP 1 Score: 436 bits (1121), Expect = 2.340e-144
Identity = 246/529 (46.50%), Postives = 355/529 (67.11%), Query Frame = 0
Query:   14 PHPRKPLPSLPRHIWSRILSLLTTPTALATAAQTTYDWHTEISSPHFDHVWRRVWDLQSKRSSESLLQTPW-NLLSPWRRQVLASHHLQSIAAPGAGPRSARLIFVPPRYQTDGTPSPEDRLAGVSSSFDVLDVFGRAVVTHAFAESVLIAFEYAVALIRRPPPLRARSARKAAPSPRPSLHYDNSSPVQGIFRFSPLKSKP---SVLAIT-SCSVLCIDVHTARNRAALSHTVLETFLLQHGLPTTVASSSDDKYALVGFDSGIIKVIEIEHPSRKNTLLLREGIDILVANEKYAVACSSMRPIALRVWNLSNGACLLSFTQASEGWESVDMIAALCPLTNVNRFLLWHGGMYTKLSTLHISFGMLLPGIDVCSSSRSD--GVPGEEENDSESVQTGICKLALLADEKDVVLSTSHRAIVVSLSSHFGMG--QKEFYGPRGALLALSTDDRVFVSADGNAFGRLGMQVSGRASLASSPKMQVWNIDDGELKSEIRLPSTATSLSVCADIVAVVCGSVGKAVILFAGGL 533
            PHP  PLPSLP  +W+ ILS LT+P  L +A+ TT  W+ EI S HFD VWR VWD  +  SS +LL+ PW  L S WR QV AS++L+ +++P +   SAR +++PPRYQ DGT  P DRL     + D+ DV G+A+V HAFA    +AFE+ +AL+RR   L  R+ R++ PS    L+Y+ +S V GI   S L++ P   S+LA++ + ++LCI V+  ++RA +S  +L++F  ++G    V +S+D+KYA+VGF SGI++V++I   +RK+TL +REG DI+VA+ K+ V  SS +PIAL VW +S+G C+ SFT  S GW ++  IAA+ P  + + F++W+G    KLS L +  G  L   D+    R        E E+ + S Q G CK+AL  D++   L+TS+R ++V ++S  G     K+  G R AL+A+STDDRV V+A+GNAFGRLG+QVSG+ASLA SP++QVWN +   L+SEIRLPS A+SLSVCAD++ V+CGS+G+A+++FAG L
Sbjct:   51 PHPNTPLPSLPIQVWAHILSYLTSPNHLCSASLTTTHWYNEIISNHFDRVWRTVWDQHATISSNALLKIPWARLPSNWRHQVSASYNLERLSSPQS---SARTLYIPPRYQRDGTVLPSDRLHCTPCNVDLEDVLGKALVAHAFASCAFVAFEHGIALVRRRT-LSLRNNRQSCPS----LYYERNSFVSGISILS-LRAMPPNASLLALSGNGTLLCITVNPDKHRA-ISWRILDSFASENGAVLNVCASADNKYAVVGFLSGIVRVVDIAKGTRKHTLCMREGADIVVASRKWVVGSSSFQPIALSVWRISDGTCVHSFTHESPGWRNIITIAAIEPGNSDDHFIIWNGR--DKLSVLDVERGTFLFSTDIKPRFRRQLRSAVEEAEHGAGSAQLGTCKMALSGDKRFAALATSNRVLIVRVASCLGDSTMHKQLDGARRALVAMSTDDRVVVTAEGNAFGRLGVQVSGKASLAESPRLQVWNAETQTLRSEIRLPSAASSLSVCADVITVICGSIGQALVVFAGKL 567          
BLAST of Gvermi6753.t1 vs. uniprot
Match: R7Q0C6_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q0C6_CHOCR)

HSP 1 Score: 266 bits (681), Expect = 3.990e-79
Identity = 185/533 (34.71%), Postives = 282/533 (52.91%), Query Frame = 0
Query:   19 PLPSLPRHIWSRILSLLTTPTALATAAQTTYDWHTEISSPHFDHVWRRVWDLQSKRSSESLLQTPWNLLSPWRRQVLASHHL----QSIAAPGAGPRSARLIFVPPRYQTDGTPSPEDRLAGVSSSFDVLDVFGRAVVTHAFAESVLIAFEYAVALIRRPPPL------RARSARKAAPSPRPSLHYDNSSPVQGIFRFS--PLKSKPSVLAITSCSVLC---IDVHTARNRAALSHTVLETFLLQHGLPTTVASSSDDKYALVGFDSGIIKVIEIEHPSRKNTLLLREGIDILVANEKYAVACSSMRPIALRVWNLSNGACLLSFTQASEGWESVDMIAALCPLTNVNRFLLWHGGMYTKLSTLHISFGMLLPGIDV------CSSSRSDGVPGEEENDSESVQTGICKLALLADEKDVVLSTSHRAIVVSLS-SHFGMGQKEFYGPRGALLALSTDDRVFVSADGNAFGRLGMQVSGRASLASSPKMQVWNIDDGELKSEIRLPSTATSLSVCADIVAVVCGSVGKAVILF 529
            PLP+LP  +   I   L T   L   AQ +  ++ E+++ H D +WRRVW   ++   ++LL     +   WR+QV AS HL    +++  P    R A ++FVPPRY  DG+  P+DR+     + DV DV GRAV   A    V++ FE  +A ++R  P       R + AR  +   R +L Y+N   +  +  FS  P     +++A  S  VL    +D    + +  L  T++++F+ +      V +S D  YALVGF SG ++V+ I     +  L++RE  +++VAN ++ +A +S  PIA  VW + +G     FT  S GWE +  IA L        F +W+G  ++ +  L+   G     I V      C  S ++    E E+ + S   G  K+ + AD K  V++TS+RA VV LS +      ++  G + ALLALSTDDRV V+A+ N FG LG +V GRASLAS P ++ W++  G L+ +I  PST TS+S   DIVA V G+VG+ ++ F
Sbjct:    4 PLPALPPELLPLICRHLVTARDLCALAQVSSPFNHELTAAHADPLWRRVWLHLARLPPDALLWA--RVAGSWRQQVAASFHLARLPRALQDPPPPARPA-VLFVPPRYAPDGSVRPDDRVRTSPRNIDVEDVLGRAVAVVALGFCVVVGFEKGIAFLKRNAPQKPAATPRGKFARLRSLE-RATLFYENQPQLGAVLMFSHQPQGDNGTIVAAMSTDVLIRIDVDQDNPKAKRPLKWTIIDSFM-EIAAVVEVTTSEDGVYALVGFASGRVRVVHIAQGGCRRVLVMRESAEMIVANGRWLLAANSFPPIACGVWEIEDGRPAHDFTCTSIGWEEITSIAGLSATRTDYLFAIWNG--HSAIRILNAKTGDFCRIIRVNSTFLRCPRSATE----EAEHGAVSPHVGRRKMIMSADRKTAVVATSNRAFVVPLSPAARPQEMRQLDGAKRALLALSTDDRVLVTAESNVFGSLGSRVLGRASLASEPLLRFWDVASGRLQGDIVTPSTVTSVSTAGDIVAAVAGAVGQVMVAF 525          
The following BLAST results are available for this feature:
BLAST of Gvermi6753.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J501_9FLOR2.340e-14446.50F-box domain-containing protein n=1 Tax=Gracilario... [more]
R7Q0C6_CHOCR3.990e-7934.71Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 180..530
e-value: 3.0E-5
score: 25.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..21
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
IPR001810F-box domainPROSITEPS50181FBOXcoord: 17..67
score: 8.755626
IPR011047Quinoprotein alcohol dehydrogenase-like superfamilySUPERFAMILY50998Quinoprotein alcohol dehydrogenase-likecoord: 210..521
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 13..68

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2158423..2160024 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6753.t1Gvermi6753.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_88 2158423..2160024 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6753.t1 ID=Gvermi6753.t1|Name=Gvermi6753.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=534bp
MAGPTSHRTAPPPPHPRKPLPSLPRHIWSRILSLLTTPTALATAAQTTYD
WHTEISSPHFDHVWRRVWDLQSKRSSESLLQTPWNLLSPWRRQVLASHHL
QSIAAPGAGPRSARLIFVPPRYQTDGTPSPEDRLAGVSSSFDVLDVFGRA
VVTHAFAESVLIAFEYAVALIRRPPPLRARSARKAAPSPRPSLHYDNSSP
VQGIFRFSPLKSKPSVLAITSCSVLCIDVHTARNRAALSHTVLETFLLQH
GLPTTVASSSDDKYALVGFDSGIIKVIEIEHPSRKNTLLLREGIDILVAN
EKYAVACSSMRPIALRVWNLSNGACLLSFTQASEGWESVDMIAALCPLTN
VNRFLLWHGGMYTKLSTLHISFGMLLPGIDVCSSSRSDGVPGEEENDSES
VQTGICKLALLADEKDVVLSTSHRAIVVSLSSHFGMGQKEFYGPRGALLA
LSTDDRVFVSADGNAFGRLGMQVSGRASLASSPKMQVWNIDDGELKSEIR
LPSTATSLSVCADIVAVVCGSVGKAVILFAGGL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR001810F-box_dom
IPR011047Quinoprotein_ADH-like_supfam
IPR036047F-box-like_dom_sf