Gvermi6718.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6718.t1
Unique NameGvermi6718.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length623
Homology
BLAST of Gvermi6718.t1 vs. uniprot
Match: A0A2V3J4U2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4U2_9FLOR)

HSP 1 Score: 647 bits (1669), Expect = 4.260e-225
Identity = 325/599 (54.26%), Postives = 444/599 (74.12%), Query Frame = 0
Query:   17 SLLPSRVANRILSSPAIFLQPKRYCLAPREDIVPSLAKAVEGERKSAAEALPVTIPKTLPNTRENRSVKPSDLYNALVHEGESRHLSKIWADAIAVTTDGSKVPEKDDSNWKKRLEQCRMDGNSDNALNIVTEINEEGYLISARTAVIVIETCIAAGEYEGAEHVLAILKSFPNDHPTRTTQSVCMARTLLAMSFTSRGWYERALQVIGFPNERFVTVDAKLIGTLNELGLGRDSLAWGVLLKALTKIGRAETAVAVVDVAMRQGVGMTDSLLHLTIDSLRVLNRWKDAEWLFTKALEKGIKPSEMTLGSILMSLTSRDARTVVAKTRIEEIVNMAKHPSPRFMKTAIMALTSVGLVEKAENLFHEVGQSHPSGVPDEETFGNLMAGYGNHLQLMPAEVADEVLANGKLEEVNKKADQLWGLYLKHHRTLKIGSLRLSQRNMMIGNYLRVKIRSYRIKEAVDILEVLVVSRDMYPTLNVGIGHICSTLGAIELCCDVLQLERLTEIMRQGGIKHDMRSLAFAVGTYVGDGNLSAALKLVEQHFADVTENETVSSQFRNHHPQLLFRRMQTLRSALRDSGIKKLKTLDDSLRNFERRHAM 615
            SL P R+ ++     + F Q + + LA     VPSLAK +  ER  A +A  V+IP T   ++++ SV+ SDLY ALV+E ESRH +K+W +A+AVT DGS++ E +D++++KRLE+        + L ++++I  +GY  SAR  ++ IE CIA  +YE AEH L+IL + P DH TRT + VC+A+TLLA S+TS G YE AL+V+GFPN+ F   D +L   LN +GLGRD+LAWGVL+K+LTK+G AETA+AVVDV+MRQGVGMTDSLLHLTIDSLR L+RW++A+WLFT A+EKG+KPSE+TLGSIL++LT + AR VV + R+EEIV+MAKHPSP+FMK A+MALTSVGL+E+AE LF+EVG     GV +E+ FG LM GYGN+LQL+  E  D V  N K EE+NKKAD LW ++++H+        +   +NM++ NY+RVK R ++ KEAVDILE +V++R+ YP L V  GHIC+ LGA+EL CDV QL RL  IM+   I HDMRSLAF++GT++GDGNL+AAL+LV++H A+V + ET+S QFR HHP LL RR++TLR+ LRD+GI  ++ L+D++R+  R++ +
Sbjct:   17 SLSPCRILSKDWRRQSTFSQFQSHYLATSGGDVPSLAKVISTERVRATDAPQVSIPNTPIRSKKSHSVRASDLYTALVYEEESRHHAKLWVEAMAVTQDGSRISEVEDADYRKRLERNDSQQIPRDPLGVISDITRKGYTPSARAFIMAIEACIATEQYESAEHALSILDALPRDHATRTPRLVCIAKTLLAFSYTSTGLYEEALRVMGFPNKPFARGDKQLTEILNSIGLGRDTLAWGVLVKSLTKLGSAETAIAVVDVSMRQGVGMTDSLLHLTIDSLRKLHRWREADWLFTTAVEKGVKPSEITLGSILLTLTGKSARRVVDRARVEEIVDMAKHPSPKFMKVALMALTSVGLMERAEALFYEVGHHQEDGVLNEDIFGYLMTGYGNYLQLLTVEEIDHVTVNRKYEEINKKADLLWEMHVQHYGHQVARRSKREAKNMLLRNYIRVKTRCFKAKEAVDILEQVVLNREKYPMLEVSTGHICTVLGAVELSCDVEQLTRLMHIMQVANINHDMRSLAFSIGTHIGDGNLTAALELVKEHLAEVMKRETISMQFRQHHPILLARRLETLRNGLRDAGIGNVEYLEDAVRSLRRKNVV 615          
BLAST of Gvermi6718.t1 vs. uniprot
Match: R7QUU2_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QUU2_CHOCR)

HSP 1 Score: 268 bits (684), Expect = 3.760e-80
Identity = 148/364 (40.66%), Postives = 228/364 (62.64%), Query Frame = 0
Query:  242 LNELGLGRDSLAWGVLLKALTKIGRAETAVAVVDVAMRQGVGMTDSLLHLTIDSLRVLNRWKDAEWLFTKALEKGIKPSEMTLGSILMSLTSRDARTVVAKTRIEEIVNMAKHPSPRFMKTAIMALTSVGLVEKAENLFHEVGQSHPSGVPDEETFGNLMAGYGNHLQL-MPAEVADEVLANGKLEEVNKKADQLWGLYLKHHRTLKIGSLRLSQ-RNMMIGNYLRVKIRSYRIKEAVDILEVLVVSRDMYPTLNVGIGHICSTLGAIELCCDVLQLERLTEIMRQGGIKHDMRSLAFAVGTYVGDGNLSAALKLVEQHFADVTENETVSSQFRNHHPQLLFRRMQTLRSALRDSGIKKLKTLD 603
            L+EL LGRD++AWGVL+KALTK+G    AVAVVDVA+ + VG+TDSL+HLTID+LR L R + AEWLF +A++KG++P E T+ S+L++LTS+  +  +   RIE++V+M   P+PRF  TA++ LT+ G +++ E LF ++ +    G P E  F  LMAGY  H ++   +  A+E     ++   ++  +Q W  +L+ + + K  S  L + R   +  YLRV+   +R+  AVD+L+   V+      L V  G +   LGA+E+ CDV ++ R+ ++M   G++HD+R+L F VGT++GDGN+ AALKLV      +          R +H  L  RR+  LRSAL ++G+ K+K L+
Sbjct:   21 LDELKLGRDTVAWGVLVKALTKLGHPGVAVAVVDVALARDVGLTDSLVHLTIDALRALGRPRQAEWLFDEAVQKGLQPRERTVASLLLTLTSKAEKRTLDTARIEQLVDMVPEPTPRFRNTALLVLTAAGSLQRFEKLFKDIAEE---GTPSEHAFSALMAGYEKHFKVGWESGGAEEDTTKARMAVADRVEEQ-WEAFLQAYGSSKPRSKVLKRVRGAFLHRYLRVQTMCFRLGNAVDVLKR--VADGEIIGLEVSAGQVNGVLGAVEMACDVREMRRVLDVMESIGVRHDVRTLTFCVGTHLGDGNVDAALKLVRNEAPRLLAGGYQDEMLRQYHWGLFERRLDMLRSALEEAGVGKVKDLE 378          
The following BLAST results are available for this feature:
BLAST of Gvermi6718.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J4U2_9FLOR4.260e-22554.26Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QUU2_CHOCR3.760e-8040.66Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 123..354
e-value: 9.3E-15
score: 56.8
NoneNo IPR availablePANTHERPTHR47934PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIALcoord: 134..327
coord: 246..406

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2084572..2086440 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6718.t1Gvermi6718.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_88 2084572..2086440 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6718.t1 ID=Gvermi6718.t1|Name=Gvermi6718.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=623bp
MSGRLHALLRFSSECSSLLPSRVANRILSSPAIFLQPKRYCLAPREDIVP
SLAKAVEGERKSAAEALPVTIPKTLPNTRENRSVKPSDLYNALVHEGESR
HLSKIWADAIAVTTDGSKVPEKDDSNWKKRLEQCRMDGNSDNALNIVTEI
NEEGYLISARTAVIVIETCIAAGEYEGAEHVLAILKSFPNDHPTRTTQSV
CMARTLLAMSFTSRGWYERALQVIGFPNERFVTVDAKLIGTLNELGLGRD
SLAWGVLLKALTKIGRAETAVAVVDVAMRQGVGMTDSLLHLTIDSLRVLN
RWKDAEWLFTKALEKGIKPSEMTLGSILMSLTSRDARTVVAKTRIEEIVN
MAKHPSPRFMKTAIMALTSVGLVEKAENLFHEVGQSHPSGVPDEETFGNL
MAGYGNHLQLMPAEVADEVLANGKLEEVNKKADQLWGLYLKHHRTLKIGS
LRLSQRNMMIGNYLRVKIRSYRIKEAVDILEVLVVSRDMYPTLNVGIGHI
CSTLGAIELCCDVLQLERLTEIMRQGGIKHDMRSLAFAVGTYVGDGNLSA
ALKLVEQHFADVTENETVSSQFRNHHPQLLFRRMQTLRSALRDSGIKKLK
TLDDSLRNFERRHAMGGSSASG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf