Gvermi6679.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6679.t1
Unique NameGvermi6679.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length246
Homology
BLAST of Gvermi6679.t1 vs. uniprot
Match: A0A2V3IXE5_9FLOR (Nucleoporin-like protein amo1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXE5_9FLOR)

HSP 1 Score: 277 bits (708), Expect = 4.600e-90
Identity = 162/258 (62.79%), Postives = 184/258 (71.32%), Query Frame = 0
Query:    1 MVVCRYYREGRCRYGDACKFEHRDPED-GDLLTNDPFAAPPSKPNRSNKPTHDSQPQWPLSVIGSRDDLSKGNDLSGDISPEEMRALAYSMAARGVSPQVSQRESEMVAAHRAKVDALSRGGMQTHAPLGSNTIQMRDPFAGDDAFSSAFGGQNNTAG-MAMEHEHTMGNPFSAQPAGNPFGHPAPYA-----------QQQQQPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSAPQFGFANVPETAPPPRFY 245
            MVVC+YY+ GRCRYGD+CKFEH DP   G   +NDPF+   SKPNR++K   D+QPQWPLSVIGSRDDLS GN+LSGD+SPEE+RALAYSMA RG+SPQVSQ+E +MVA HRAKVDALSRGG+QTHAP+GSNTIQM+DPFA D  FS  F   +N    MAM+      N F +QP GNPFG  AP+            QQQ QPSXXXXXXXXXXXX                   FSA QFGFANVPETAPPP+FY
Sbjct:   58 MVVCKYYQAGRCRYGDSCKFEHIDPPGRGGFSSNDPFSPSSSKPNRNSKHA-DAQPQWPLSVIGSRDDLSHGNELSGDVSPEELRALAYSMAPRGISPQVSQKEGQMVAEHRAKVDALSRGGLQTHAPVGSNTIQMQDPFAEDGGFSGGFHAPSNQGSQMAMDQAAQGRNQFGSQPVGNPFGQGAPFGHPPQGSQFQPTQQQSQPSXXXXXXXXXXXXSQNITPAQEQQ--------FSAAQFGFANVPETAPPPQFY 306          
BLAST of Gvermi6679.t1 vs. uniprot
Match: UPI000D1C3FFE (zinc finger CCCH domain-containing protein 16 n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C3FFE)

HSP 1 Score: 72.8 bits (177), Expect = 1.960e-11
Identity = 65/213 (30.52%), Postives = 92/213 (43.19%), Query Frame = 0
Query:    2 VVCRYYREGRCRYGDACKFEHRDPEDGDLLTNDPFAAPPSKP-NRSNKP-----------THDSQPQWPLSVIGSRDDLSKGNDLSGDISPEEMRALAYSMAARGVSPQ-VSQRESEMVAAHRAKVDALSRGGMQTHAPLGSNTIQMRDPFAGDDAFSSAFGGQNNTAGMAMEHEHTMGN---------PFSAQPAGNPFGHPAPYAQQQQQP 192
            VVCR ++ G CR+G  CKF H+  + G    N    AP   P +R N P           T++    W L+       L   ND+SGD S EE+RA+AY  A +G+  + ++ RE+ M  A  A+ DAL R   +  A  G + +Q   P A    F       N+      + +  MG          P   QPA   F  P+P+  Q   P
Sbjct:    7 VVCRDFQRGTCRFGAHCKFLHQQ-QAGFGRQNQAVQAPVQAPEHRCNDPRACKERIRDDFTNERPSYWRLTCYAHWKHLP--NDISGDTSFEELRAMAYESALQGMPLRDITSREAYMFRAKEAEFDALKRDPYKGPASKGFSNVQP-SPLASSTIFGKLVP-NNSPISQMFKQDTNMGGFGNGPVISPPQQIQPAAFSFPSPSPFPAQSVFP 214          
BLAST of Gvermi6679.t1 vs. uniprot
Match: A0A5J4YNU7_PORPP (C3H1-type domain-containing protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YNU7_PORPP)

HSP 1 Score: 66.2 bits (160), Expect = 1.290e-9
Identity = 41/123 (33.33%), Postives = 60/123 (48.78%), Query Frame = 0
Query:    1 MVVCRYYREGRCRYGDACKFEHRDPEDGDLLTNDPFAAPPSKPNRSNKPTHDSQPQWPLSVIGSRDDLSKGND--------------LSGDISPEEMRALAYSMAARGVSPQ-VSQRESEMVA 108
            MVVC+Y+++GRC+YGDAC+FEH  P  G     + F  P +           SQP +    +    D  +G                + GD+SP+E+RA AY+   +G + Q V Q E+  VA
Sbjct:    1 MVVCKYWQQGRCQYGDACRFEHVGP--GGQAQGNAFGQPAAP---------QSQPMFGGGAMNGHADTYRGRGAVAARGVSRARRCLVKGDVSPDELRAEAYAAVLKGATAQQVVQHEASRVA 112          
BLAST of Gvermi6679.t1 vs. uniprot
Match: A0A6H0Y129_9PEZI (C3H1-type domain-containing protein n=1 Tax=Peltaster fructicola TaxID=286661 RepID=A0A6H0Y129_9PEZI)

HSP 1 Score: 64.7 bits (156), Expect = 2.420e-8
Identity = 46/127 (36.22%), Postives = 60/127 (47.24%), Query Frame = 0
Query:    3 VCRYYREGRCRYGDACKFEHRDPEDGDLLTNDPFAAPPSKPN-RSNK-----------------------PTHDSQPQWPLSVIG-SRDDLSKGNDLSGDISPEEMRALAYSMAARGVSPQVSQRES 104
            VC++Y EGRCR+GD CK+EH + +       + FAA  S+P  RSN                           D +P WPLS  G  RD   +  D   + SPEEMR L Y   A G + + +QRES
Sbjct:    8 VCQFYLEGRCRFGDGCKYEHPNDQ---AQNQNRFAALGSQPRGRSNAFGANSTETTKQSMFAVTAEGIKLELTDERPIWPLSSYGPGRDAPRQLLDAEFEQSPEEMRLLHYMALANGNTQETAQRES 131          
BLAST of Gvermi6679.t1 vs. uniprot
Match: A0A8E2EB34_9PEZI (C3H1-type domain-containing protein n=1 Tax=Lepidopterella palustris CBS 459.81 TaxID=1314670 RepID=A0A8E2EB34_9PEZI)

HSP 1 Score: 62.8 bits (151), Expect = 1.080e-7
Identity = 52/166 (31.33%), Postives = 75/166 (45.18%), Query Frame = 0
Query:    1 MVVCRYYREGRCRYGDACKFEH--RDPEDGDLLTNDPFAAPPSKPNRSN-----------------KPTHDS----QPQWPLSVIG-SRDDLSKGNDLSGDISPEEMRALAYSMAARGVSPQVSQRESEMVAAHRAKVD-ALSR-GGMQTHAPLGSNTIQMRDPFA 140
            MVVC+Y+R+G CR+GD CKFEH       G+     P     ++P+RS+                 K   D     +P WPLS  G  RD   +  + + ++SPEEMR   Y   A G   Q  Q E ++    + ++D AL+   G   +   G+N    R  FA
Sbjct:    1 MVVCKYFRDGNCRFGDRCKFEHIPSSAPSGNRFA--PLQNDRNQPSRSDFGARGGTQKQWPYSLDPKTVKDDLTTDRPVWPLSAYGPGRDAPRQLIEGALEVSPEEMRLQFYHAKAAGQEAQAVQMEGQLARQAQHQIDNALNNLDGACQYIADGANVHPNRIDFA 164          
BLAST of Gvermi6679.t1 vs. uniprot
Match: A0A899FWQ6_9ASCO (C3H1-type domain-containing protein n=1 Tax=Pneumocystis wakefieldiae TaxID=38082 RepID=A0A899FWQ6_9ASCO)

HSP 1 Score: 62.0 bits (149), Expect = 1.560e-7
Identity = 38/103 (36.89%), Postives = 56/103 (54.37%), Query Frame = 0
Query:    1 MVVCRYYREGRCRYGDACKFEHRDPEDGDLLTNDPFAAPPSKPNRSNKPTHD---------SQPQWPLSVIGSRDDLSKG--NDLSG-DISPEEMRALAYSMA 91
            MV+CR++ EGRCRYG +C+ EH++PE+G     +       K + +N    +         + P+W  +  G+     KG  N +SG DISPEE+RA AY  A
Sbjct:    1 MVICRFFLEGRCRYGSSCRNEHQNPENGVFFRPNRPILESFKSSATNHIISEDAIREDLGKNHPEWLFTSYGT----GKGHPNLISGKDISPEELRAFAYECA 99          
BLAST of Gvermi6679.t1 vs. uniprot
Match: A0A6A6PQ34_9PEZI (C3H1-type domain-containing protein n=1 Tax=Neohortaea acidophila TaxID=245834 RepID=A0A6A6PQ34_9PEZI)

HSP 1 Score: 60.1 bits (144), Expect = 8.560e-7
Identity = 41/121 (33.88%), Postives = 61/121 (50.41%), Query Frame = 0
Query:    3 VCRYYREGRCRYGDACKFEHRDPEDGDLLTNDPFAAPPSKPN----RSNKPTHDSQPQWPLSVIGSRDDLSKGNDLSGDI--SPEEMRALAYSMAARGVSPQVSQRESEMVAAHRAKVDAL 117
            VC +Y EGRC++GD C+F H  P D +  T  P  + P   +    +S+    D +P WPLS  G   D  +   L G +  SPEE+R   Y +AA G + Q    E+E ++   A+   +
Sbjct:   24 VCNFYLEGRCKFGDNCRFYH-PPRDSN--TTRPGQSLPYHLSVEGIKSDLTPGDERPSWPLSAYGPGKDAPR-QLLEGALEQSPEELRVQYYLVAATGAAEQYQLTETEALSQANAQAQQI 140          
BLAST of Gvermi6679.t1 vs. uniprot
Match: A0A074Y799_AURSE (C3H1-type domain-containing protein n=1 Tax=Aureobasidium subglaciale (strain EXF-2481) TaxID=1043005 RepID=A0A074Y799_AURSE)

HSP 1 Score: 58.5 bits (140), Expect = 2.870e-6
Identity = 43/131 (32.82%), Postives = 62/131 (47.33%), Query Frame = 0
Query:    3 VCRYYREGRCRYGDACKFEH---RDPEDG----DLLTNDPFAAPPSKPNR----SNKPTH------------DSQPQWPLSVIGSRDD----LSKGNDLSGDISPEEMRALAYSMAARGVSPQVSQRESEM 106
            VC +Y++GRC++GD CKFEH     P+D     + L N    + P  P R    S++ T+            + +P+WP S  G   D    L  G  L  ++SPEEMR + Y  AA G      Q E ++
Sbjct:   19 VCSFYQQGRCKFGDNCKFEHPGANRPQDSGNRFNALGNQGNQSRPPAPGRGQHYSSQNTYGVTKDGIEGDLRNEKPKWPFSAYGPGRDAPIQLFGGYPL--EMSPEEMRVMYYEAAASGNPQPAIQAEQQL 147          
BLAST of Gvermi6679.t1 vs. uniprot
Match: UPI0008523FDE (nuclear pore complex protein DDB_G0274915-like isoform X1 n=2 Tax=Cyphomyrmex costatus TaxID=456900 RepID=UPI0008523FDE)

HSP 1 Score: 58.2 bits (139), Expect = 3.830e-6
Identity = 55/202 (27.23%), Postives = 78/202 (38.61%), Query Frame = 0
Query:    1 MVVCRYYREGRCRYGDACKFEHRDPEDGDLLTNDPFAAPPSKPNRSNKPTHDSQPQWPLSVIGSRDDLSKGNDLSG--DISPEEMRALAYSMAARGVSPQVSQRESEMVAAHRAKVDALSR-------------GGMQTHAPLG--SNT------------IQMRDPFAGDDAF-----SSAFGGQNNTAGMAMEHEHTMGN 168
            MV+C+YYR+G CRYG  C+FEH +   G+  T D      +K         +   QW LS       L +   + G  D+SPEE+R   Y+    G+  Q      ++    +AK + L               G  Q  + LG  +NT            +Q  +PF           SS FG  NN       +  T GN
Sbjct:    1 MVICKYYRQGNCRYGQYCQFEHINHFAGNTKTEDDIVILVAK----EVLFAERGGQWLLSCFAP---LKERPCIPGMEDLSPEEVRWETYNAQKNGMGEQAKLHFQQLCQEMKAKREVLKNPTRETMTMLKKILGSGQKVSQLGLVNNTSANNVFGNTTYNVQNNNPFGXXXXXXXXXTSSIFGKSNNNTASVFNNTATFGN 195          
BLAST of Gvermi6679.t1 vs. uniprot
Match: A0A6A4XCH0_AMPAM (Nucleoporin-like protein 2 n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4XCH0_AMPAM)

HSP 1 Score: 57.0 bits (136), Expect = 4.450e-6
Identity = 57/179 (31.84%), Postives = 74/179 (41.34%), Query Frame = 0
Query:    1 MVVCRYYREGRCRYGDACKFEH--RDPEDGD-----LLTNDPFAAP--PSKPNR------SNKPTHDSQPQWPLSVIGSRDDLSKGNDLSG--DISPEEMRALAYSMAARGVSPQVSQRESEMVAAHRAKVDALSRGG--MQTHAPLGSNTIQMRDPFAGDD-AFSSAFGGQNNTAGMA 159
            MVVC YY +G CRYGD C+F+H  + P  G           P AA   PS  N       +     ++  QWP S       L     + G  D+SPEE+RA AY            Q  +  VA +R K  +L      M+T+ P  + +      F G   A SS FG Q   A  A
Sbjct:    1 MVVCTYYNQGYCRYGDRCRFDHPFKGPTAGAGANYRAQAQQPAAAAGTPSSFNELLTGIANEMKVWENSKQWPFSCFSP---LKGQPCIPGLTDLSPEEVRAEAYKSKVANTPDAYLQFFNAKVAEYRQKRASLHNASPEMRTYMPQTTGST-----FGGQTPAASSVFGSQPAPAAAA 171          
The following BLAST results are available for this feature:
BLAST of Gvermi6679.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A2V3IXE5_9FLOR4.600e-9062.79Nucleoporin-like protein amo1 n=1 Tax=Gracilariops... [more]
UPI000D1C3FFE1.960e-1130.52zinc finger CCCH domain-containing protein 16 n=3 ... [more]
A0A5J4YNU7_PORPP1.290e-933.33C3H1-type domain-containing protein n=1 Tax=Porphy... [more]
A0A6H0Y129_9PEZI2.420e-836.22C3H1-type domain-containing protein n=1 Tax=Peltas... [more]
A0A8E2EB34_9PEZI1.080e-731.33C3H1-type domain-containing protein n=1 Tax=Lepido... [more]
A0A899FWQ6_9ASCO1.560e-736.89C3H1-type domain-containing protein n=1 Tax=Pneumo... [more]
A0A6A6PQ34_9PEZI8.560e-733.88C3H1-type domain-containing protein n=1 Tax=Neohor... [more]
A0A074Y799_AURSE2.870e-632.82C3H1-type domain-containing protein n=1 Tax=Aureob... [more]
UPI0008523FDE3.830e-627.23nuclear pore complex protein DDB_G0274915-like iso... [more]
A0A6A4XCH0_AMPAM4.450e-631.84Nucleoporin-like protein 2 n=1 Tax=Amphibalanus am... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 1..24
e-value: 1.7E-4
score: 30.9
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 1..25
score: 14.933928
IPR041367E3 ligase, CCCH-type zinc fingerPFAMPF18044zf-CCCH_4coord: 3..22
e-value: 2.6E-7
score: 30.3
NoneNo IPR availableGENE3D4.10.1000.10coord: 1..56
e-value: 4.5E-7
score: 31.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 183..231
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 160..245
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..60
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..79
NoneNo IPR availablePANTHERPTHR46527NUCLEOPORIN-LIKE PROTEIN 2coord: 51..168
coord: 1..25
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 2..23

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:1912916..1913653 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6679.t1Gvermi6679.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_88 1912916..1913653 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6679.t1 ID=Gvermi6679.t1|Name=Gvermi6679.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=246bp
MVVCRYYREGRCRYGDACKFEHRDPEDGDLLTNDPFAAPPSKPNRSNKPT
HDSQPQWPLSVIGSRDDLSKGNDLSGDISPEEMRALAYSMAARGVSPQVS
QRESEMVAAHRAKVDALSRGGMQTHAPLGSNTIQMRDPFAGDDAFSSAFG
GQNNTAGMAMEHEHTMGNPFSAQPAGNPFGHPAPYAQQQQQPSPFQQQPI
AQPMQQHAAQSTPPQNLTPAQEQQFSAPQFGFANVPETAPPPRFY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
IPR041367Znf-CCCH_4
IPR036855Znf_CCCH_sf