Gvermi6679.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6679.t1
Unique NameGvermi6679.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length246
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:1912916..1913653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4896.SPBC15D4.10c.1
Max annot lvl4751|Fungi
KEGG koko:K14321
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
GOsGO:0000226,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0006996,GO:0007010,GO:0007017,GO:0007163,GO:0008150,GO:0008360,GO:0009987,GO:0012505,GO:0016043,GO:0022603,GO:0022604,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0034399,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0061245,GO:0061246,GO:0065007,GO:0065008,GO:0070013,GO:0071840,GO:0071963
Evalue5.44e-08
EggNOG OGsKOG0845@1|root,KOG0845@2759|Eukaryota,39YMU@33154|Opisthokonta,3Q3JF@4751|Fungi,3RKM2@4890|Ascomycota,3MD91@451866|Taphrinomycotina
Descriptionorganelle organization
COG categoryK
BRITEko00000,ko00001,ko00002,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6679Gvermi6679Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 1912916..1913653 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6679.t1.stop1Gvermi6679.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 1912916..1912918 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6679.t1.CDS1Gvermi6679.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 1912916..1913653 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6679.t1.exon1Gvermi6679.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 1912916..1913653 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6679.t1.start1Gvermi6679.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 1913651..1913653 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6679.t1Gvermi6679.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 1912916..1913653 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6679.t1 ID=Gvermi6679.t1|Name=Gvermi6679.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=246bp
MVVCRYYREGRCRYGDACKFEHRDPEDGDLLTNDPFAAPPSKPNRSNKPT
HDSQPQWPLSVIGSRDDLSKGNDLSGDISPEEMRALAYSMAARGVSPQVS
QRESEMVAAHRAKVDALSRGGMQTHAPLGSNTIQMRDPFAGDDAFSSAFG
GQNNTAGMAMEHEHTMGNPFSAQPAGNPFGHPAPYAQQQQQPSPFQQQPI
AQPMQQHAAQSTPPQNLTPAQEQQFSAPQFGFANVPETAPPPRFY*
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spliced messenger RNA

>Gvermi6679.t1 ID=Gvermi6679.t1|Name=Gvermi6679.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=738bp|location=Sequence derived from alignment at ScGOVlb_88:1912916..1913653- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGTCTGCAGATACTACAGGGAGGGGCGCTGTCGCTACGGCGACGC
GTGCAAATTCGAGCACAGAGACCCGGAAGACGGCGACCTTCTCACAAACG
ATCCTTTCGCCGCTCCGCCTTCCAAACCGAACCGCAGCAACAAGCCGACG
CACGACTCGCAGCCGCAATGGCCCCTCAGCGTCATCGGCTCCAGAGACGA
TCTGTCAAAAGGAAATGACCTGTCTGGCGACATTTCGCCCGAGGAAATGC
GAGCGCTGGCGTACTCAATGGCCGCGCGCGGCGTGTCTCCGCAGGTGTCA
CAGAGGGAGAGCGAAATGGTTGCGGCACATCGCGCCAAGGTGGATGCCTT
GTCAAGAGGAGGCATGCAGACGCACGCACCTCTCGGAAGCAACACCATTC
AAATGCGAGACCCGTTTGCGGGAGACGATGCGTTTTCTTCAGCATTTGGT
GGTCAGAACAACACTGCGGGAATGGCCATGGAGCATGAACACACTATGGG
CAACCCGTTCAGCGCGCAGCCGGCAGGGAATCCTTTCGGGCACCCTGCAC
CGTACGCACAACAGCAACAACAACCTTCTCCGTTTCAGCAACAACCAATC
GCACAGCCAATGCAACAACACGCTGCTCAGTCAACGCCTCCGCAGAACCT
TACACCCGCTCAAGAACAGCAGTTTAGTGCACCACAGTTTGGCTTTGCAA
ATGTCCCAGAAACTGCACCACCACCACGGTTCTATTGA
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protein sequence of Gvermi6679.t1

>Gvermi6679.t1 ID=Gvermi6679.t1|Name=Gvermi6679.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=246bp
MVVCRYYREGRCRYGDACKFEHRDPEDGDLLTNDPFAAPPSKPNRSNKPT
HDSQPQWPLSVIGSRDDLSKGNDLSGDISPEEMRALAYSMAARGVSPQVS
QRESEMVAAHRAKVDALSRGGMQTHAPLGSNTIQMRDPFAGDDAFSSAFG
GQNNTAGMAMEHEHTMGNPFSAQPAGNPFGHPAPYAQQQQQPSPFQQQPI
AQPMQQHAAQSTPPQNLTPAQEQQFSAPQFGFANVPETAPPPRFY*
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mRNA from alignment at ScGOVlb_88:1912916..1913653-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6679.t1 ID=Gvermi6679.t1|Name=Gvermi6679.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=738bp|location=Sequence derived from alignment at ScGOVlb_88:1912916..1913653- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTGTCTGCAGATACTACAGGGAGGGGCGCTGTCGCTACGGCGACGC
GTGCAAATTCGAGCACAGAGACCCGGAAGACGGCGACCTTCTCACAAACG
ATCCTTTCGCCGCTCCGCCTTCCAAACCGAACCGCAGCAACAAGCCGACG
CACGACTCGCAGCCGCAATGGCCCCTCAGCGTCATCGGCTCCAGAGACGA
TCTGTCAAAAGGAAATGACCTGTCTGGCGACATTTCGCCCGAGGAAATGC
GAGCGCTGGCGTACTCAATGGCCGCGCGCGGCGTGTCTCCGCAGGTGTCA
CAGAGGGAGAGCGAAATGGTTGCGGCACATCGCGCCAAGGTGGATGCCTT
GTCAAGAGGAGGCATGCAGACGCACGCACCTCTCGGAAGCAACACCATTC
AAATGCGAGACCCGTTTGCGGGAGACGATGCGTTTTCTTCAGCATTTGGT
GGTCAGAACAACACTGCGGGAATGGCCATGGAGCATGAACACACTATGGG
CAACCCGTTCAGCGCGCAGCCGGCAGGGAATCCTTTCGGGCACCCTGCAC
CGTACGCACAACAGCAACAACAACCTTCTCCGTTTCAGCAACAACCAATC
GCACAGCCAATGCAACAACACGCTGCTCAGTCAACGCCTCCGCAGAACCT
TACACCCGCTCAAGAACAGCAGTTTAGTGCACCACAGTTTGGCTTTGCAA
ATGTCCCAGAAACTGCACCACCACCACGGTTCTATTGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:1912916..1913653-

>Gvermi6679.t1 ID=Gvermi6679.t1|Name=Gvermi6679.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=738bp|location=Sequence derived from alignment at ScGOVlb_88:1912916..1913653- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTGTCTGCAGATACTACAGGGAGGGGCGCTGTCGCTACGGCGACGC
GTGCAAATTCGAGCACAGAGACCCGGAAGACGGCGACCTTCTCACAAACG
ATCCTTTCGCCGCTCCGCCTTCCAAACCGAACCGCAGCAACAAGCCGACG
CACGACTCGCAGCCGCAATGGCCCCTCAGCGTCATCGGCTCCAGAGACGA
TCTGTCAAAAGGAAATGACCTGTCTGGCGACATTTCGCCCGAGGAAATGC
GAGCGCTGGCGTACTCAATGGCCGCGCGCGGCGTGTCTCCGCAGGTGTCA
CAGAGGGAGAGCGAAATGGTTGCGGCACATCGCGCCAAGGTGGATGCCTT
GTCAAGAGGAGGCATGCAGACGCACGCACCTCTCGGAAGCAACACCATTC
AAATGCGAGACCCGTTTGCGGGAGACGATGCGTTTTCTTCAGCATTTGGT
GGTCAGAACAACACTGCGGGAATGGCCATGGAGCATGAACACACTATGGG
CAACCCGTTCAGCGCGCAGCCGGCAGGGAATCCTTTCGGGCACCCTGCAC
CGTACGCACAACAGCAACAACAACCTTCTCCGTTTCAGCAACAACCAATC
GCACAGCCAATGCAACAACACGCTGCTCAGTCAACGCCTCCGCAGAACCT
TACACCCGCTCAAGAACAGCAGTTTAGTGCACCACAGTTTGGCTTTGCAA
ATGTCCCAGAAACTGCACCACCACCACGGTTCTATTGA
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