Gvermi6638.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6638.t1
Unique NameGvermi6638.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length102
Homology
BLAST of Gvermi6638.t1 vs. uniprot
Match: A0A2V3IR06_9FLOR (Ribosomal silencing factor RsfS n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IR06_9FLOR)

HSP 1 Score: 105 bits (263), Expect = 1.170e-26
Identity = 48/94 (51.06%), Postives = 67/94 (71.28%), Query Frame = 0
Query:    2 DVAVVDVADKASFADCLIVCSGYATSHVRAIAHGLKNDMRARGVTLNGDLVSLCGTDSLDWIVVDIGPIVVHVMTAEARQHYQLEQLWLPDTPP 95
            DV ++DV +KA+FAD  ++C  +  +H+RAIA  L + + +  VTL+G  VS+CG    +W+VVDIG  VVH+MT  ARQ Y+LE LW+PDTPP
Sbjct:   90 DVVIIDVREKATFADSFLLCCAHTPAHIRAIAEQLAHFINSAQVTLDGHSVSICGHQHDEWLVVDIGHTVVHIMTEHARQQYRLEDLWIPDTPP 183          
BLAST of Gvermi6638.t1 vs. uniprot
Match: A0A553FJF4_9GAMM (Ribosomal silencing factor RsfS n=1 Tax=Thalassomonas sp. M1454 TaxID=2594477 RepID=A0A553FJF4_9GAMM)

HSP 1 Score: 89.0 bits (219), Expect = 6.450e-21
Identity = 42/91 (46.15%), Postives = 62/91 (68.13%), Query Frame = 0
Query:    2 DVAVVDVADKASFADCLIVCSGYATSHVRAIAHGLKNDMRARGVTLNGDLVSLCGTDSLDWIVVDIGPIVVHVMTAEARQHYQLEQLWLPD 92
            D+ V+DV +KASF DC+IVCSG ++ HVR+I   L  + +A+G+++ G    + G D  +W +VD+G I+VHVMT + R  Y+LE LW  D
Sbjct:   21 DIVVIDVMEKASFTDCMIVCSGNSSRHVRSITENLNTEAKAKGLSIIG----IEGNDIGEWSLVDLGDIIVHVMTDDIRDTYKLEDLWAKD 107          
BLAST of Gvermi6638.t1 vs. uniprot
Match: UPI0019CFA13D (ribosome silencing factor n=1 Tax=Thalassotalea sp. G2M2-11 TaxID=2787627 RepID=UPI0019CFA13D)

HSP 1 Score: 85.5 bits (210), Expect = 1.380e-19
Identity = 42/88 (47.73%), Postives = 60/88 (68.18%), Query Frame = 0
Query:    2 DVAVVDVADKASFADCLIVCSGYATSHVRAIAHGLKNDMRARGVTLNGDLVSLCGTDSLDWIVVDIGPIVVHVMTAEARQHYQLEQLW 89
            D+  +D+ADK+ FAD +IV SG ++ HV++IA  L  D RA GV    + + + G D  +W +VD+G IV+H+MT E+R  YQLEQLW
Sbjct:   21 DITTLDIADKSDFADYMIVASGNSSRHVKSIAQSLVTDCRAEGV----EPLGIEGNDVGEWALVDLGDIVIHIMTDESRDKYQLEQLW 104          
BLAST of Gvermi6638.t1 vs. uniprot
Match: A0A068YVI7_9GAMM (Ribosomal silencing factor RsfS n=4 Tax=Serratia symbiotica TaxID=138074 RepID=A0A068YVI7_9GAMM)

HSP 1 Score: 84.3 bits (207), Expect = 3.920e-19
Identity = 39/88 (44.32%), Postives = 60/88 (68.18%), Query Frame = 0
Query:    2 DVAVVDVADKASFADCLIVCSGYATSHVRAIAHGLKNDMRARGVTLNGDLVSLCGTDSLDWIVVDIGPIVVHVMTAEARQHYQLEQLW 89
            D+ V++V  K+S  DC+I+C+G +T HV +IA  L    RA G+ L+G    + G ++ DW+VVD+G ++VHVM  E+R  Y+LE+LW
Sbjct:   21 DIVVLNVQGKSSITDCMIICTGTSTHHVMSIADHLVQQSRAAGIALHG----MKGQEASDWVVVDLGEVIVHVMQEESRHLYELEKLW 104          
BLAST of Gvermi6638.t1 vs. uniprot
Match: A0A1J4QJ50_9GAMM (Ribosomal silencing factor RsfS n=1 Tax=Oceanisphaera psychrotolerans TaxID=1414654 RepID=A0A1J4QJ50_9GAMM)

HSP 1 Score: 84.0 bits (206), Expect = 6.890e-19
Identity = 40/88 (45.45%), Postives = 61/88 (69.32%), Query Frame = 0
Query:    2 DVAVVDVADKASFADCLIVCSGYATSHVRAIAHGLKNDMRARGVTLNGDLVSLCGTDSLDWIVVDIGPIVVHVMTAEARQHYQLEQLW 89
            D+ V+DV+ K+S  DC+IVCSG ++ HV +IA  L  + R  G+    +L+S+ G D+ +W++VD+G ++VHVM  E R  YQLE+LW
Sbjct:   21 DIQVLDVSGKSSITDCMIVCSGNSSRHVNSIAEHLATEARHAGL----NLLSVEGKDAGEWVLVDLGDVIVHVMQEETRDFYQLEKLW 104          
BLAST of Gvermi6638.t1 vs. uniprot
Match: UPI001AA042F8 (ribosome silencing factor n=1 Tax=Oceanisphaera sp. DM8 TaxID=2818389 RepID=UPI001AA042F8)

HSP 1 Score: 83.6 bits (205), Expect = 9.770e-19
Identity = 40/92 (43.48%), Postives = 61/92 (66.30%), Query Frame = 0
Query:    2 DVAVVDVADKASFADCLIVCSGYATSHVRAIAHGLKNDMRARGVTLNGDLVSLCGTDSLDWIVVDIGPIVVHVMTAEARQHYQLEQLWLPDT 93
            D+ V+DV  K+S  DC+IVCSG ++ HV AIA  +  + +  G+T     +S+ G D+ +W++VD+G ++VHVM  E R  YQLE+LW  +T
Sbjct:   21 DIQVLDVTGKSSITDCMIVCSGNSSRHVNAIAENMVMEAKQAGLTY----LSMQGKDAGEWVLVDLGDVIVHVMQEETRDFYQLEKLWGSNT 108          
BLAST of Gvermi6638.t1 vs. uniprot
Match: UPI001AD9C835 (ribosome silencing factor n=1 Tax=Endozoicomonas sp. G2_1 TaxID=2821091 RepID=UPI001AD9C835)

HSP 1 Score: 83.2 bits (204), Expect = 1.120e-18
Identity = 44/88 (50.00%), Postives = 60/88 (68.18%), Query Frame = 0
Query:    2 DVAVVDVADKASFADCLIVCSGYATSHVRAIAHGLKNDMRARGVTLNGDLVSLCGTDSLDWIVVDIGPIVVHVMTAEARQHYQLEQLW 89
            D+ V+DV  KASFAD +IVCSG ++ HV++IA  +  + RA GV    + + + G D  +W +VD+G +VVHVMT E R  YQLEQLW
Sbjct:   21 DITVLDVKGKASFADAMIVCSGNSSRHVKSIAEHVILESRAAGV----EPLGVEGNDIGEWSLVDLGDVVVHVMTDETRDTYQLEQLW 104          
BLAST of Gvermi6638.t1 vs. uniprot
Match: A0A4V0ZFV4_9GAMM (Ribosomal silencing factor RsfS n=1 Tax=Litorilituus sediminis TaxID=718192 RepID=A0A4V0ZFV4_9GAMM)

HSP 1 Score: 83.2 bits (204), Expect = 1.180e-18
Identity = 39/88 (44.32%), Postives = 58/88 (65.91%), Query Frame = 0
Query:    2 DVAVVDVADKASFADCLIVCSGYATSHVRAIAHGLKNDMRARGVTLNGDLVSLCGTDSLDWIVVDIGPIVVHVMTAEARQHYQLEQLW 89
            D+  ++++DKASFAD +++CSG +  HV++IA  +  D RA G+   G    + G D  +W +VD+G ++VHVMT E R  Y LEQLW
Sbjct:   21 DIVSLNISDKASFADYMVICSGNSNRHVKSIAQAIAMDCRAEGIEPKG----IEGNDVGEWALVDLGDVIVHVMTDEQRDKYNLEQLW 104          
BLAST of Gvermi6638.t1 vs. uniprot
Match: A0A1W5DFZ8_9GAMM (Ribosomal silencing factor RsfS n=39 Tax=Enterobacterales TaxID=91347 RepID=A0A1W5DFZ8_9GAMM)

HSP 1 Score: 82.8 bits (203), Expect = 1.580e-18
Identity = 39/88 (44.32%), Postives = 61/88 (69.32%), Query Frame = 0
Query:    2 DVAVVDVADKASFADCLIVCSGYATSHVRAIAHGLKNDMRARGVTLNGDLVSLCGTDSLDWIVVDIGPIVVHVMTAEARQHYQLEQLW 89
            D+  +DV  K+S  DC+I+C+G +T HV +IA+ L  + R+ G+ L G    + G ++ DWIVVD+G ++VHVM  E+R+ Y+LE+LW
Sbjct:   21 DIIALDVQGKSSITDCMIICTGTSTRHVMSIANHLVQESRSAGMELFG----MKGQEASDWIVVDLGEVIVHVMQEESRRLYELEKLW 104          
BLAST of Gvermi6638.t1 vs. uniprot
Match: A0A2S4XG02_SERMA (Ribosomal silencing factor RsfS n=7 Tax=Serratia TaxID=613 RepID=A0A2S4XG02_SERMA)

HSP 1 Score: 82.4 bits (202), Expect = 2.250e-18
Identity = 39/88 (44.32%), Postives = 60/88 (68.18%), Query Frame = 0
Query:    2 DVAVVDVADKASFADCLIVCSGYATSHVRAIAHGLKNDMRARGVTLNGDLVSLCGTDSLDWIVVDIGPIVVHVMTAEARQHYQLEQLW 89
            D+  +DV  K+S  DC+I+C+G +T HV +IA  +  + RA G+ L G    + G ++ DWIVVD+G ++VHVM  E+R+ Y+LE+LW
Sbjct:   21 DIIALDVQGKSSITDCMIICTGTSTRHVMSIASHVVQESRAAGMELYG----MKGQEASDWIVVDLGEVIVHVMQEESRRLYELEKLW 104          
The following BLAST results are available for this feature:
BLAST of Gvermi6638.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IR06_9FLOR1.170e-2651.06Ribosomal silencing factor RsfS n=1 Tax=Gracilario... [more]
A0A553FJF4_9GAMM6.450e-2146.15Ribosomal silencing factor RsfS n=1 Tax=Thalassomo... [more]
UPI0019CFA13D1.380e-1947.73ribosome silencing factor n=1 Tax=Thalassotalea sp... [more]
A0A068YVI7_9GAMM3.920e-1944.32Ribosomal silencing factor RsfS n=4 Tax=Serratia s... [more]
A0A1J4QJ50_9GAMM6.890e-1945.45Ribosomal silencing factor RsfS n=1 Tax=Oceanispha... [more]
UPI001AA042F89.770e-1943.48ribosome silencing factor n=1 Tax=Oceanisphaera sp... [more]
UPI001AD9C8351.120e-1850.00ribosome silencing factor n=1 Tax=Endozoicomonas s... [more]
A0A4V0ZFV4_9GAMM1.180e-1844.32Ribosomal silencing factor RsfS n=1 Tax=Litorilitu... [more]
A0A1W5DFZ8_9GAMM1.580e-1844.32Ribosomal silencing factor RsfS n=39 Tax=Enterobac... [more]
A0A2S4XG02_SERMA2.250e-1844.32Ribosomal silencing factor RsfS n=7 Tax=Serratia T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR043519Nucleotidyltransferase superfamilyGENE3D3.30.460.10Beta Polymerase, domain 2coord: 1..99
e-value: 2.7E-24
score: 87.0
IPR043519Nucleotidyltransferase superfamilySUPERFAMILY81301Nucleotidyltransferasecoord: 2..91
NoneNo IPR availablePFAMPF02410RsfScoord: 2..89
e-value: 5.4E-21
score: 74.9
NoneNo IPR availablePANTHERPTHR21043:SF0MITOCHONDRIAL ASSEMBLY OF RIBOSOMAL LARGE SUBUNIT PROTEIN 1coord: 2..97
IPR004394Protein Iojap/ribosomal silencing factor RsfSTIGRFAMTIGR00090TIGR00090coord: 2..89
e-value: 5.6E-23
score: 79.0
IPR004394Protein Iojap/ribosomal silencing factor RsfSPANTHERPTHR21043IOJAP SUPERFAMILY ORTHOLOGcoord: 2..97

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:1794450..1794755 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6638.t1Gvermi6638.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_88 1794450..1794755 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6638.t1 ID=Gvermi6638.t1|Name=Gvermi6638.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=102bp
LDVAVVDVADKASFADCLIVCSGYATSHVRAIAHGLKNDMRARGVTLNGD
LVSLCGTDSLDWIVVDIGPIVVHVMTAEARQHYQLEQLWLPDTPPQSTII
E*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR043519NT_sf
IPR004394Iojap/RsfS/C7orf30