Gvermi6606.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6606.t1
Unique NameGvermi6606.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length1324
Homology
BLAST of Gvermi6606.t1 vs. uniprot
Match: A0A2V3IXR5_9FLOR (RING-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXR5_9FLOR)

HSP 1 Score: 1140 bits (2950), Expect = 0.000e+0
Identity = 643/1340 (47.99%), Postives = 847/1340 (63.21%), Query Frame = 0
Query:   11 ERRRRKREARYRLHAIASFLIRSERRGLRVSPHAQYVLENECLEVFKDYGGPPDTFQFASTLRETAVRMFRQGRYKEANQRYRMASLFNPFDPTLLSNRATCIYNLKRYRRCVEICQLCLSAFPNLFYTENTGLYFQVLILLANALIKLRDFGEAEKVFKDLVSVKNRLSSEKDTRVSMT--EALNKLRRFQIDLKIAKQSPSDLFEESTLRE-EKPARPADFPYQKERGRFLHPHTPSCYLLEINTGIDDYNLSAKEDGDPNLIVNVEHLCYHIYHMGMGPCGHDDNDLIWQNDSESCSTQGDNEDFQEGSCFGEDTNCYADYEYEEDEYEGK-----IQCTCGRNHNEESGVVSRDELASNDEEIFPDRNEVLRCDEFGFVESNSLDNEEQPMIHDSQLSDSSHYSELNLGVNANRNPNPESLDGAFSQNPTSS-SLKYKTFLSMDDAVESLRLARYSDASPFDQSGKESESDQVFCRLASELACFVSGTQNDTEPSPIQ-------DSDNEEPISKLDFSHVRENEDWDLFEKAFKVLPSGNDTFLSRCTAQVFGNSFHSSGALDFTRYFGPHLRLQSQGGKKKSKACDRNCPPCFARRMWKLRFKSHKVGEAKQFFASVYDDERRDDRNFLSLHEWSCSGNYGSGYELATEHGILVHGVAYLILLQNEVCWQRNDEGLVNGVQKPFSAALFKNMKTRTDLAAISSLRDMLLETLYLMHCIKYQAWKGVAPSHQFVRTAALVAEMVSPSPDLSSLSIKDGETRLMIQNESAVENMNKWAAVGHLSKEEEWVYHTLSRDVREVILHFERKALDITLTSLPPILNINEGEVNGISHIKELL----YGQRCRQLENMSASRKVVDLERGEALLSRAIRAFPLKLSLYFKRADIRYRMKKWDACIWDLNKIQALLEQQKEANGQHALVSEQQKVMLYHVFLLEGDAHRAKAQELNSGRKRHIIASIDHYKRAVSLCPKKKRTRVKILQKVRQQEHLLALMDKNKGAKRKDDSSAKKSR-RERKPSAVKQMVMTPQIN-SCASSEEGEEAFAVGNRYGALLKESSETPPSLELRQDRFQPAASRPDLRSVDNKFNRNR---RIRIGSNNRPSPETILSEVRRILSLFGGAARSTDIVDNLDLTEWNVQDSGDFISKTYKTLHSLCSEYGTGFETRASSHSDPIIALTNDGDFTPVSRTKICSSST-----RRHNEKPSRGHRASHANHSRSRSSRLVQSQSQAMSQTRASESIDFEKMIANLLRQEKDTQKPG--QSVSESKTDRDIECCICMDNPSDSLTIPCRHPFCEACILNYLTRENADKNCPVCRSEVTNVECMVVH 1318
            ERR   REAR RL AIASFLIRSERRGLR+SPHAQY++ENECL+V+K Y   PDTF+FA+ LRETAVRMFRQGRYKEANQRYRMASLFNP+DPTLLSNRATCI+NL+RYRRC+EICQLC SAFP+L+Y +NTGLYFQ+LILLANA ++LR F EA  V   L+ VK +L +EKD+R  +T  EA NK+RRF++DL++A     D  +E+   + +KP RP +FPYQ+ERGRFLHPHTP CYL EINTGIDDY+L+++EDGDP+LIVNVE+LC+H+YHMGMG C HDD+D IW  +S+SCS  GD     EGS         A + +  D   G+      +C C   H  E       E+ S D    P   E                         ++        ++   V +N        DG ++  P    + K+   L++ +AVE+ R+AR   ++   QS + + +D  + RL +ELACF S    +  PS ++       DS++EEP+S+LD+S V E +  +  EKA  +LP GNDTFLS+C AQ+FG SFHS+GALDFTRYFGPH R QS   KKK+K CDRNC PCFARRMWKLRFKS+K G A QF  S+  D+  D++ FL   EW  SG YGSGYE A    +LVHG+AYLILLQ+EV WQRN    +  +Q+ F+  LF+N+KTR DL +I  L  ML ET+ L+ CI Y A KG+  SHQF  T+  VAE +  +PDL  +S KD E  L+ +N +  EN++ W+   ++ KEEEWVYHTL RDVRE+ILHFERK+L I   S+P I+N    E       K+LL    Y QR R+LE  S SRK VDL R E LL+R +   P    LYFKRA++R+ MK W +CI DL+K+Q+L+ Q        + +SE+++V+LYH + LEGD HR KA+E +  +  H+  SID Y++A+++ P+ K+ R  +L+K+++Q++ +  ++     KR    SA  S+ + +K S VK  V T + N   +SS+E E+A   G+RYGALL      P +    ++  +PA  R    + ++  N +    R +    +  + + ILSEV RILSLFGG ARS+DI+ NLD T+W++ +    +  TY TLH LC   G GFE RA S SDP+I LT++G+FTPVSR K C S +      R  E  +RG R                        TR S++I + K++  LL  E +    G  Q     ++DRD ECCICMDNP D LTIPCRHPFCEACIL+YL REN+ KNCPVCRS+VTNV  M +H
Sbjct:   13 ERRXXXREARNRLQAIASFLIRSERRGLRISPHAQYLIENECLDVYKAYDESPDTFEFATMLRETAVRMFRQGRYKEANQRYRMASLFNPYDPTLLSNRATCIFNLRRYRRCIEICQLCFSAFPDLYYEDNTGLYFQILILLANAHLQLRQFSEAIAVHNTLLQVKEKLRAEKDSRTDVTVKEASNKIRRFEMDLRLANSDSWDAGQENPHTDTDKPVRPKNFPYQEERGRFLHPHTPRCYLREINTGIDDYDLASEEDGDPSLIVNVENLCHHVYHMGMGACAHDDDDFIWPYESDSCSVSGD-----EGSDEYGFQGAQAQHPHSRDGLVGEGDYEACECHCDEYHEGEE--ADETEILSEDLCDLPQLKEADSESXXXXXXXXXXXXXXXXXFSKAEXXXXDKKEDVRCRVGSN--------DGGYTLKPPQHRNSKFSDVLTLREAVEARRMAR---STLEQQSPRRNGADAHYWRLVTELACFTSKKMYN--PSTVRKGNRLFYDSESEEPMSELDYSLVAETQATEFLEKACALLPEGNDTFLSKCIAQIFGQSFHSNGALDFTRYFGPHSRSQSHSSKKKAKGCDRNCAPCFARRMWKLRFKSYKTGNALQFDRSILGDKPIDEKTFLFPPEWFLSGYYGSGYETAFAVALLVHGIAYLILLQSEVSWQRNGSQNITDMQQRFNTVLFENVKTRNDLRSIFELFCMLSETVNLIDCINYHASKGIPRSHQFTNTSQSVAENLRSTPDLQHISKKDREATLLSRNGTPFENLSNWSMDQYVGKEEEWVYHTLFRDVREIILHFERKSLSIFPNSVPFIMNSTGFE-------KDLLITGLYRQRSRELEKKSNSRKNVDLRRSERLLNRVLEVHPSTARLYFKRAEVRFMMKHWKSCIKDLSKLQSLVTQSGGKGTDPSTLSERERVLLYHSYNLEGDVHREKAKETSPAQVCHVTTSIDRYRKALAISPRTKKNRTHLLKKIQEQQNRMTAVENKTHGKRSTKPSANNSKPQSKKRSPVKTTVSTSEHNHDTSSSDENEDALVSGSRYGALLGTPKPLPTT---GREPPKPAKQRFSANATNSPGNASASGGRRQKKKQDALTVDYILSEVHRILSLFGGEARSSDIMANLDFTQWSISNPKTHVLNTYGTLHGLCMSSGQGFEIRAGSQSDPVIGLTDEGEFTPVSRRKPCPSKSPSIGNERKREVSARGRRXXXXXXXXXXXXXXXXXXXXXXXXTRMSQTIHYSKLVNELLTSENEKNAAGSKQKAGAQESDRDKECCICMDNPPDCLTIPCRHPFCEACILDYLARENSAKNCPVCRSDVTNVASMAIH 1322          
BLAST of Gvermi6606.t1 vs. uniprot
Match: R7QI65_CHOCR (RING-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QI65_CHOCR)

HSP 1 Score: 270 bits (689), Expect = 6.050e-70
Identity = 263/966 (27.23%), Postives = 408/966 (42.24%), Query Frame = 0
Query:   22 RLHAIASFLIRSERRGLRVSPHAQYVLENECLEVFKDYGGPPDTFQFASTLRETAVRMFRQGRYKEANQRYRMASLFNPFDPTLLSNRATCIYNLKRYRRCVEICQLCLSAFPNLFYTENTGLYFQVLILLANALIKLRDFGEAEKVFKDLVSVKNRLSSEKDTRVSMTEALNKLRRFQIDL--------KIAKQSPSDLFEESTLREEKPARPADFPYQKERGRFLHPHTPSCYLLEINTGIDDYNLSAKEDGDPNLIVNVEHLCYHIYHMGMGPCGHDDNDLIWQNDSESCSTQGDNEDFQEGSCFGEDTNCYADYEYEEDEYEGKIQCTCGRNHNEESGVVS------RDELASNDEEIFPDRNEVLRCDEFGFVESNSLDNE-EQPMIHDSQLSDSSHYSELNLGVNANRNPNPESLDGA----FSQNP-----TSSSLKYKTFLSMDD--AVESLRLARYSDA---------------------SPFDQSGKESESDQVFC--RLASELACF-VSGTQNDTEPSPIQDSDNEEPISKLDFSHVRENEDWDLFEKAFKVLPSGND--TFLSRCTAQVFGNSFHSSGALDFTRYFGPHLRLQSQGGKKKSKACDRNCPPCFARRMWKLRFKSHKVGEAKQFFASVYDDERRDDRNFLSLHEWSCSGNYGSGYELATEHGILVHGVAYLILLQNEVCWQRNDEGLVNGVQKPFSAALFKNMKTRTDLAAISSLRDMLLETLYLMHCIKYQAWKG-VAPSHQFVRTAALVAEMVSPSPDLSSLSIKDGE---------TRLMIQNESAVENMNKWAAVGHLSKEEEWVYHTLSRDVREVILHFERKALDITLTSLPPILNINEGEVNGISHIKELLYGQR--------CRQLENMSASRKVV------------DLERGEALLSRAIRAFPLKLSLYFKRADIRYRMKKWDACIWDLNKIQALLE 905
            R  A+ S   R+ER  + +S   +  LE +   +F      P+  QFA+ L+  AVR+ RQ RY+EAN R+ +AS FNP DPTL+SNRATC+YNL +Y +C+++C  CL+AFP L   EN  LY ++LI +  A I+L +F EA      L S++  L+    + +   E    +  F+  L        K  K   S     ST++++K     D                S                   DG+ +  V +E LC H++  G GPC H  +D      S     +GD   + E                               +H+   G +S      RDE  +  +   PD    L  +E G  +S   D + + P+  DS +  S +    +      R     +   A    F  +P      SS L  K  +   +  A+ S   +  S                       SPF  S   + +   F    L  E+A   + G  +D       +SD+E           R +E   +  +      +G++    L     +V G +F ++ ++DFTR FG H+   S   K+K K CD+ C  CFAR+MW LRF S  +  AK     +  D RR+ R FL+   W  +G Y SGYE+A +   LVHGV YL  LQ+EV W+ +       +Q  F ++L +  ++  ++  +  L  M+ +TL L          G    S QF ++A++VA+         SLS+K GE         T L  + E    N+  W+ +GH++KEEEW+YH L RD+  ++    + AL+       P + + +GE    S   E   G+R        CR +  +  +R  +            ++ +G  L+S AI   P +  L+ KRA +R     W   + D++K  AL E
Sbjct:   19 RREALKSLFARAERHNVGISRAVRADLELQAKSLFDYATNSPEATQFAAHLKSIAVRLLRQRRYREANARFGLASRFNPGDPTLISNRATCMYNLAKYPKCIDMCLDCLNAFPKL-GMENPKLYCKILIRMGRANIELDNFEEASSARDVLTSMRKSLADNFGSEIPQEEFSALIDPFERHLNAKLSCSTKARKAGSSSSGGVSTMKDDKDEYGGD-------------GESSXXXXXXXXXXXXXXXXXXXDGNLDGFVKIEDLCPHLHRHGNGPCDHQFSDRPTV--SSVSPFEGDGGQYSEPDL--------------------------ANSHSSGDGSISSLASSERDENVATTDSNMPD----LVSEEDGGSDSEGSDGDFDGPVPFDSSVKSSRNLQTADGRPQRTRKSLKPAQGSAKKRQFPAHPKATVEVSSELSSKQGVGRANGAAIASATASMLSPTNFQPWFVKPRTRTPPPADCLKSPFSPSVIAAHAKLPFKVPTLPPEVAARELRGKVSDE----CYESDDERGPRSAGLLPERRDEHRSILNQESNAKGNGSNHSMILRAMLKEVMGKTFRTNRSVDFTRIFGNHVAAASSS-KRKKKICDKRCASCFARKMWNLRFVSTDLDVAKGALNDIETDSRRERRTFLARDLWQGTGYYASGYEMAFDVPALVHGVVYLCHLQSEVYWRGDKVAFARDIQYNFISSLERIYRSFPNIDFLFMLFIMIRDTLNLFGLFPDPFHHGDKGRSFQFSKSASVVAQ--------KSLSLKPGESENDLDICDTLLASRTEDVNRNLFNWSRLGHVTKEEEWIYHILLRDISHLMTRLMKPALN-------PPMYLEQGE--SFSDAFERACGERSGNEKYWRCRIVTIVDRTRHRMIERTAHDISHAGNIAKGTHLISHAITGRPRQPRLFLKRAQVRSEQAMWKESLSDIDKGLALCE 916          
The following BLAST results are available for this feature:
BLAST of Gvermi6606.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IXR5_9FLOR0.000e+047.99RING-type domain-containing protein n=1 Tax=Gracil... [more]
R7QI65_CHOCR6.050e-7027.23RING-type domain-containing protein n=1 Tax=Chondr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 146..179
e-value: 49.0
score: 8.9
coord: 103..136
e-value: 7.1
score: 15.6
coord: 874..907
e-value: 200.0
score: 3.6
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 1265..1305
e-value: 3.4E-7
score: 39.9
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 1265..1306
score: 13.108904
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 1263..1311
e-value: 3.9E-10
score: 39.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1193..1207
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 987..1015
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1208..1228
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 397..430
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1180..1228
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 987..1014
NoneNo IPR availablePANTHERPTHR12109:SF3RING FINGER PROTEIN 141coord: 1104..1312
NoneNo IPR availablePANTHERPTHR12109RING FINGER PROTEIN 141-RELATEDcoord: 1104..1312
NoneNo IPR availableCDDcd16449RING-HCcoord: 1265..1305
e-value: 1.46552E-10
score: 55.5513
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 1253..1311
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 1210..1320
e-value: 1.8E-14
score: 55.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 852..989
e-value: 5.0E-5
score: 25.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 66..198
e-value: 9.9E-16
score: 59.7
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 68..175
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 1280..1289

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:1523395..1527366 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6606.t1Gvermi6606.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_88 1523395..1527366 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6606.t1 ID=Gvermi6606.t1|Name=Gvermi6606.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=1324bp
MQSSHSDGALERRRRKREARYRLHAIASFLIRSERRGLRVSPHAQYVLEN
ECLEVFKDYGGPPDTFQFASTLRETAVRMFRQGRYKEANQRYRMASLFNP
FDPTLLSNRATCIYNLKRYRRCVEICQLCLSAFPNLFYTENTGLYFQVLI
LLANALIKLRDFGEAEKVFKDLVSVKNRLSSEKDTRVSMTEALNKLRRFQ
IDLKIAKQSPSDLFEESTLREEKPARPADFPYQKERGRFLHPHTPSCYLL
EINTGIDDYNLSAKEDGDPNLIVNVEHLCYHIYHMGMGPCGHDDNDLIWQ
NDSESCSTQGDNEDFQEGSCFGEDTNCYADYEYEEDEYEGKIQCTCGRNH
NEESGVVSRDELASNDEEIFPDRNEVLRCDEFGFVESNSLDNEEQPMIHD
SQLSDSSHYSELNLGVNANRNPNPESLDGAFSQNPTSSSLKYKTFLSMDD
AVESLRLARYSDASPFDQSGKESESDQVFCRLASELACFVSGTQNDTEPS
PIQDSDNEEPISKLDFSHVRENEDWDLFEKAFKVLPSGNDTFLSRCTAQV
FGNSFHSSGALDFTRYFGPHLRLQSQGGKKKSKACDRNCPPCFARRMWKL
RFKSHKVGEAKQFFASVYDDERRDDRNFLSLHEWSCSGNYGSGYELATEH
GILVHGVAYLILLQNEVCWQRNDEGLVNGVQKPFSAALFKNMKTRTDLAA
ISSLRDMLLETLYLMHCIKYQAWKGVAPSHQFVRTAALVAEMVSPSPDLS
SLSIKDGETRLMIQNESAVENMNKWAAVGHLSKEEEWVYHTLSRDVREVI
LHFERKALDITLTSLPPILNINEGEVNGISHIKELLYGQRCRQLENMSAS
RKVVDLERGEALLSRAIRAFPLKLSLYFKRADIRYRMKKWDACIWDLNKI
QALLEQQKEANGQHALVSEQQKVMLYHVFLLEGDAHRAKAQELNSGRKRH
IIASIDHYKRAVSLCPKKKRTRVKILQKVRQQEHLLALMDKNKGAKRKDD
SSAKKSRRERKPSAVKQMVMTPQINSCASSEEGEEAFAVGNRYGALLKES
SETPPSLELRQDRFQPAASRPDLRSVDNKFNRNRRIRIGSNNRPSPETIL
SEVRRILSLFGGAARSTDIVDNLDLTEWNVQDSGDFISKTYKTLHSLCSE
YGTGFETRASSHSDPIIALTNDGDFTPVSRTKICSSSTRRHNEKPSRGHR
ASHANHSRSRSSRLVQSQSQAMSQTRASESIDFEKMIANLLRQEKDTQKP
GQSVSESKTDRDIECCICMDNPSDSLTIPCRHPFCEACILNYLTRENADK
NCPVCRSEVTNVECMVVHKGVGK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR011990TPR-like_helical_dom_sf
IPR017907Znf_RING_CS