Gvermi6589.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gvermi6589.t1
Unique Name	Gvermi6589.t1
Type	polypeptide
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	176

Homology

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BLAST of Gvermi6589.t1 vs. uniprot
Match: A0A2V3IXT2_9FLOR (Ferredoxin-2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXT2_9FLOR)

HSP 1 Score: 254 bits (650), Expect = 2.770e-84
Identity = 119/177 (67.23%), Postives = 144/177 (81.36%), Query Frame = 0

Query:    1 MRLAFLPPFVPQQV--PNRQLLKCSQQPLSSPPSSASPINQPIRRRDGSLPGRPGAKTYEVTVQDPHKGVVHKYTVPEDRYVWHSMTDQGADIPSSCRNGCCTTCAVKITSGSVQQDQALGLLKDMRAKGYALLCVSYPLSDINCVLQDEDEVYVKQFGSSFEGGGVEWGGFVPEDD 175
            M  AF+ PF+        +++ KC +   SSP +  +P    I++RDGS P RPGAKTY+V ++DP KG+VH YTVPEDRY+WHS+TDQGAD+P+SCRNGCCTTCAVK+++G VQQ++ALGLLKDMRAKGYALLCVSY  SDI+CVLQ +DEVYVKQFGSSFE GGVEWGGFVPEDD
Sbjct:    1 MSSAFVAPFLKGTALQKRKEVSKCVKASTSSPLTPLNPSETRIKKRDGSFPSRPGAKTYQVKIEDPRKGIVHTYTVPEDRYIWHSITDQGADLPASCRNGCCTTCAVKMSTGEVQQEEALGLLKDMRAKGYALLCVSYARSDIDCVLQGKDEVYVKQFGSSFESGGVEWGGFVPEDD 177

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BLAST of Gvermi6589.t1 vs. uniprot
Match: R7QMK8_CHOCR (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMK8_CHOCR)

HSP 1 Score: 224 bits (572), Expect = 1.720e-71
Identity = 109/145 (75.17%), Postives = 118/145 (81.38%), Query Frame = 0

Query:   31 PSSASPINQPIRRRDGSLPGRPGAKTYEVTVQDPHKGVVHKYTVPEDRYVWHSMTDQGADIPSSCRNGCCTTCAVKITSGSVQQDQALGLLKDMRAKGYALLCVSYPLSDINCVLQDEDEVYVKQFGSSFEGGGVEWGGFVPEDD 175
            P  A+PI   +++RDGSLPG P AKT+ VTV DP    V KY VPEDRYVWH M+DQ ADIPSSC NGCCTTCAVKITSG V Q +ALGLLK+MR + YALLCVSYP SDI CVLQDEDEVYVKQFGSSFE GGVEWGG VPEDD
Sbjct:  100 PPIATPIQ--MKKRDGSLPGNPNAKTHTVTVHDPKNDRVLKYQVPEDRYVWHGMSDQDADIPSSCLNGCCTTCAVKITSGEVDQSEALGLLKEMRDQDYALLCVSYPKSDIECVLQDEDEVYVKQFGSSFESGGVEWGGVVPEDD 242

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BLAST of Gvermi6589.t1 vs. uniprot
Match: A0A7S1TD70_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TD70_9RHOD)

HSP 1 Score: 202 bits (514), Expect = 8.650e-64
Identity = 92/145 (63.45%), Postives = 116/145 (80.00%), Query Frame = 0

Query:   31 PSSASPINQPIRRRDGSLPGRPGAKTYEVTVQDPHKGVVHKYTVPEDRYVWHSMTDQGADIPSSCRNGCCTTCAVKITSGSVQQDQALGLLKDMRAKGYALLCVSYPLSDINCVLQDEDEVYVKQFGSSFEGGGVEWGGFVPEDD 175
            PS    + + I RRDG+LP +PGAK + VTV+DP K VV++  VPEDRY+W  M +QG DIP+SCRNGCCTTCA ++TSG V QD+ALGLLK+++A+GYALLCVSYP SD+   LQD DEVY +QFG +FE GGVEWGGF+PE++
Sbjct:   19 PSPRRSLPRWICRRDGALPSKPGAKRFHVTVRDPAKNVVYETQVPEDRYIWWEMEEQGFDIPASCRNGCCTTCAGRVTSGEVSQDEALGLLKEIKAQGYALLCVSYPRSDVEVTLQDIDEVYCRQFGDTFEQGGVEWGGFLPEEE 163

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BLAST of Gvermi6589.t1 vs. uniprot
Match: A0A7S1ER34_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ER34_9RHOD)

HSP 1 Score: 189 bits (480), Expect = 1.540e-58
Identity = 90/143 (62.94%), Postives = 110/143 (76.92%), Query Frame = 0

Query:   33 SASPINQPIRRRDGSLPGRPGAKTYEVTVQDPHKGVVHKYTVPEDRYVWHSMTDQGADIPSSCRNGCCTTCAVKITSGSVQQDQALGLLKDMRAKGYALLCVSYPLSDINCVLQDEDEVYVKQFGSSFEGGGVEWGGFVPEDD 175
            SAS I +  +RR G+LPG   AK Y+VT++DP K V H   VP DRY+WHSM +QG DIP+SCR+GCCTTCAV+I  GSV Q++ALGL+K +R +GYALLCVSYP SD+   LQD DEVYVKQFG+SFE GG EWGG   ++D
Sbjct:   29 SASNIKR--QRRHGNLPGDVNAKKYKVTIKDPAKNVTHSVEVPVDRYIWHSMEEQGYDIPASCRHGCCTTCAVRIEQGSVDQEEALGLMKALREQGYALLCVSYPESDLVATLQDADEVYVKQFGNSFESGGKEWGGVFLDED 169

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BLAST of Gvermi6589.t1 vs. uniprot
Match: A0A5J4YT31_PORPP (Ferredoxin-1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YT31_PORPP)

HSP 1 Score: 182 bits (463), Expect = 1.470e-55
Identity = 83/126 (65.87%), Postives = 99/126 (78.57%), Query Frame = 0

Query:   50 GRPGAKTYEVTVQDPHKGVVHKYTVPEDRYVWHSMTDQGADIPSSCRNGCCTTCAVKITSGSVQQDQALGLLKDMRAKGYALLCVSYPLSDINCVLQDEDEVYVKQFGSSFEGGGVEWGGFVPEDD 175
            G   A+ Y VTV DP K   +   VPEDRY+WH+M +QG DIP+SCR+GCCTTCAV+I SG+VQQDQALGLL++MR +GYALLCVSYP SDI   LQDEDEVY+KQFG +FE GG EWGG   ++D
Sbjct:   73 GSANARRYNVTVHDPKKNATYSVQVPEDRYIWHAMEEQGYDIPASCRHGCCTTCAVRIESGAVQQDQALGLLREMRDQGYALLCVSYPKSDIVATLQDEDEVYIKQFGGTFEQGGKEWGGVFLDED 198

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BLAST of Gvermi6589.t1 vs. uniprot
Match: A0A1X6NNM8_PORUM (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NNM8_PORUM)

HSP 1 Score: 176 bits (446), Expect = 1.390e-52
Identity = 85/126 (67.46%), Postives = 97/126 (76.98%), Query Frame = 0

Query:   45 DGSLPGRPGAKTYEVTVQDPHKGVVHKYTVPEDRYVWHSMTD-QGADIPSSCRNGCCTTCAVKITSGSVQQDQALGLLKDMRAKGYALLCVSYPLSDINCVLQDEDEVYVKQFGSSFEGGGVEWGG 169
            DGSLPG P A T+ VTV D    VV    VPEDRY+WH+M +  G  +PSSCR+GCCTTCAV++TSG V Q +ALGLL+ MR  GYALLCVS P SDI CVLQ+EDEVYVKQFG +FE GGVEWGG
Sbjct:   53 DGSLPGSPDAPTHTVTVLDGAGAVVQTLAVPEDRYIWHAMEEASGGRLPSSCRHGCCTTCAVRVTSGEVDQREALGLLRQMREVGYALLCVSKPRSDITCVLQEEDEVYVKQFGDTFEQGGVEWGG 178

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BLAST of Gvermi6589.t1 vs. uniprot
Match: A0A4D9CSH6_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSH6_9STRA)

HSP 1 Score: 169 bits (429), Expect = 3.720e-50
Identity = 88/167 (52.69%), Postives = 109/167 (65.27%), Query Frame = 0

Query:   15 PNRQLLKCSQQPLSSPPSSASPINQPIRRRDGSL-PGRPGAKTYEVTVQDPHKGVVHKYTVPEDRYVWHSMTDQGADIPS-----SCRNGCCTTCAVKITSGSVQQDQALGLLKDMRAKGYALLCVSYPLSDINCVLQDEDEVYVKQFGSSFEGGGVEWGGFVPEDD 175
            P ++L    Q  LS  P+      QP+    G + PG+P AK Y+VTV DP     +   VPEDRY++ +  D G D+P       CRNGCCTTCAVK+  G V+ + ALGLL+DM+ KGYAL C S P SDI C LQDEDEVYV+Q+G +FE GGVEWGGF+PEDD
Sbjct:   53 PPKRLTVTEQLQLS--PNRWKRNGQPLEPGVGGIWPGKPDAKKYKVTVVDPRTKTNYTMDVPEDRYIFFAFEDSGVDLPMVNGKRMCRNGCCTTCAVKMKEGKVKMEAALGLLRDMKNKGYALSCCSLPRSDIVCELQDEDEVYVRQWGETFESGGVEWGGFLPEDD 217

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BLAST of Gvermi6589.t1 vs. uniprot
Match: A0A7S1ER81_9RHOD (Ferredoxin n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ER81_9RHOD)

HSP 1 Score: 165 bits (418), Expect = 1.060e-49
Identity = 75/111 (67.57%), Postives = 90/111 (81.08%), Query Frame = 0

Query:   54 AKTYEVTVQDPHKGVVHKYTVPEDRYVWHSMTDQGADIPSSCRNGCCTTCAVKITSGSVQQDQALGLLKDMRAKGYALLCVSYPLSDINCVLQDEDEVYVKQFGSSFEGGG 164
            AK Y+VT++DP K V H   VP DRY+WHSM +QG DIP+SCR+GCCTTCAV+I  GSV Q++ALGL+K +R +GYALLCVSYP SD+   LQD DEVYVKQFG+SFE GG
Sbjct:    4 AKKYKVTIKDPAKNVTHSVEVPVDRYIWHSMEEQGYDIPASCRHGCCTTCAVRIEQGSVDQEEALGLMKALREQGYALLCVSYPESDLVATLQDADEVYVKQFGNSFEAGG 114

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BLAST of Gvermi6589.t1 vs. uniprot
Match: M2VXX0_GALSU (Ferredoxin n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VXX0_GALSU)

HSP 1 Score: 166 bits (419), Expect = 4.600e-49
Identity = 76/130 (58.46%), Postives = 95/130 (73.08%), Query Frame = 0

Query:   46 GSLPGRPGAKTYEVTVQDPHKGVVHKYTVPEDRYVWHSMTDQGADIPSSCRNGCCTTCAVKITSGSVQQDQALGLLKDMRAKGYALLCVSYPLSDINCVLQDEDEVYVKQFGSSFEGGGVEWGGFVPEDD 175
            G   G P A+ Y VTV++   G  +   VP DRY+W S  +QG ++PSSC NGCCTTCA ++ SG ++Q  ALGLLK+M+ K YALLCVSYP SD+  VLQ+EDEVY +QFG SFE GGVE+GG +PEDD
Sbjct:   56 GETFGDPNARKYRVTVRNQRTGECYIRDVPTDRYIWWSFLEQGIELPSSCVNGCCTTCACRVVSGRIEQPLALGLLKEMKNKRYALLCVSYPKSDVEVVLQEEDEVYCRQFGDSFESGGVEYGGIIPEDD 185

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BLAST of Gvermi6589.t1 vs. uniprot
Match: A0A7S0BU01_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BU01_9RHOD)

HSP 1 Score: 162 bits (410), Expect = 9.390e-48
Identity = 79/132 (59.85%), Postives = 97/132 (73.48%), Query Frame = 0

Query:   46 GSLPGRPGAKTYEVTVQDPHKGVVHKYTVPEDRYVWHSMTDQGADIPSSCRNGCCTTCAVKITSGSVQQDQALGLLKDMRAKGYALLCVSYPLSDINCVLQDEDEVYVKQFGSSFEGGGVEWGGFVP--EDD 175
            G+LPG P AKT++V V D   G V+   VPEDRY+ + + +QG ++P+ CRNGCCTTCAVK+ SG V Q +ALGLLK+M+ +GYAL+CVSYP SDI    QDEDEVYVKQFG SFE GGV  G  +   EDD
Sbjct:   50 GALPGDPNAKTWKVKVLDSKTGDVYTADVPEDRYILYYLAEQGMEMPAQCRNGCCTTCAVKLQSGEVHQPEALGLLKEMKDEGYALMCVSYPRSDIEATTQDEDEVYVKQFGESFESGGVVPGAVLDAIEDD 181

The following BLAST results are available for this feature:

BLAST of Gvermi6589.t1 vs. uniprot

BLAST of Gvermi6589.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2V3IXT2_9FLOR	2.770e-84	67.23	Ferredoxin-2 n=1 Tax=Gracilariopsis chorda TaxID=4...	[more]
R7QMK8_CHOCR	1.720e-71	75.17	2Fe-2S ferredoxin-type domain-containing protein n...	[more]
A0A7S1TD70_9RHOD	8.650e-64	63.45	Hypothetical protein n=1 Tax=Compsopogon caeruleus...	[more]
A0A7S1ER34_9RHOD	1.540e-58	62.94	Hypothetical protein n=1 Tax=Timspurckia oligopyre...	[more]
A0A5J4YT31_PORPP	1.470e-55	65.87	Ferredoxin-1 n=1 Tax=Porphyridium purpureum TaxID=...	[more]
A0A1X6NNM8_PORUM	1.390e-52	67.46	2Fe-2S ferredoxin-type domain-containing protein n...	[more]
A0A4D9CSH6_9STRA	3.720e-50	52.69	2Fe-2S ferredoxin-type domain-containing protein n...	[more]
A0A7S1ER81_9RHOD	1.060e-49	67.57	Ferredoxin n=1 Tax=Timspurckia oligopyrenoides Tax...	[more]
M2VXX0_GALSU	4.600e-49	58.46	Ferredoxin n=1 Tax=Galdieria sulphuraria TaxID=130...	[more]
A0A7S0BU01_9RHOD	9.390e-48	59.85	Hypothetical protein n=1 Tax=Rhodosorus marinus Ta...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 70..137 e-value: 3.9E-13 score: 49.2
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROSITE	PS51085	2FE2S_FER_2	coord: 57..151 score: 9.895494
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 59..141 e-value: 1.47097E-18 score: 73.9684
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 54..159 e-value: 6.1E-25 score: 88.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..55
None	No IPR available	PANTHER	PTHR43112:SF10	FERREDOXIN C 2, CHLOROPLASTIC	coord: 36..157
None	No IPR available	PANTHER	PTHR43112	FERREDOXIN	coord: 36..157
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 51..156

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_88	contig	ScGOVlb_88:1431518..1432151 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6589.t1	Gvermi6589.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	mRNA	ScGOVlb_88 1431518..1432151 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gvermi6589.t1 ID=Gvermi6589.t1|Name=Gvermi6589.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=176bp
MRLAFLPPFVPQQVPNRQLLKCSQQPLSSPPSSASPINQPIRRRDGSLPG
RPGAKTYEVTVQDPHKGVVHKYTVPEDRYVWHSMTDQGADIPSSCRNGCC
TTCAVKITSGSVQQDQALGLLKDMRAKGYALLCVSYPLSDINCVLQDEDE
VYVKQFGSSFEGGGVEWGGFVPEDD*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001041	2Fe-2S_ferredoxin-type
IPR012675	Beta-grasp_dom_sf
IPR036010	2Fe-2S_ferredoxin-like_sf