Gvermi6334.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6334.t1
Unique NameGvermi6334.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length316
Homology
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BLAST of Gvermi6334.t1 vs. uniprot
Match: A0A2V3IEQ2_9FLOR (PR domain zinc finger protein 16 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEQ2_9FLOR)

HSP 1 Score: 110 bits (274), Expect = 9.890e-24
Identity = 198/327 (60.55%), Postives = 220/327 (67.28%), Query Frame = 0 
Query:   13 HYSHSLPSYSYXXXXXTARS-----QAPLTTVPXXPSQHYRSAFTPASNALFEAIIAAEHASS---NNPLTTVAALAAEQPRVPTAPTSSYSSPHPA----------------FPYSRFAPTAMPELSCYSSAQPPLXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKRRTSPADSXXXSKQQKLPNDPKNGFHCGACGATFAMKRQRDHHVRHEHERSXXXXXXXXXXXXXXXXXXXXXIVXDRIRPYAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEIILDTAAIRSRAAASMQSPHSQIQS 315
            HYSH LPSY+Y      + +      APL +  XX   HYR AF P  NALF+AI A EHA++   NNPLTTVAALAA+QPRVPT  +  Y S  P                 FPY RFAP  M ++     A P       XXXXXXXXXXXXXXXXXXX   T    ++ A+          P     GF+C AC ATF  KRQRD+HVR EHERS  XXXXXXXXXXXXXXXXXXX  XDRIRPY XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXP++ +DTAAIR+RAAA+  + HSQIQS
Sbjct:   95 HYSHPLPSYAYPPVSPPSAAIPRTHPAPLPSXXXXXPPHYRHAFAP--NALFDAISATEHAAAAADNNPLTTVAALAADQPRVPTL-SKPYPSSSPTAXXXXXXXXXXXXXXXFPYQRFAP-GMHDIFWQGHA-PSQFVHPPXXXXXXXXXXXXXXXXXXXISQTPHXPSATANG------SNKPAGSGTGFNCSACSATFPNKRQRDNHVRSEHERSFAXXXXXXXXXXXXXXXXXXXXXXDRIRPYPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDVQVDTAAIRNRAAAT--TLHSQIQS 408
The following BLAST results are available for this feature:
BLAST of Gvermi6334.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IEQ2_9FLOR9.890e-2460.55PR domain zinc finger protein 16 n=1 Tax=Gracilari... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 265..288
e-value: 4.0
score: 16.4
coord: 180..203
e-value: 6.1
score: 15.2
coord: 236..259
e-value: 0.0074
score: 25.5
coord: 207..230
e-value: 0.024
score: 23.8
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 207..230
e-value: 0.0012
score: 19.1
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 267..288
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 209..230
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 238..259
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 182..203
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 236..264
score: 12.923248
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 207..235
score: 11.967224
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 180..208
score: 8.808193
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 234..259
e-value: 4.0E-7
score: 31.8
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 260..294
e-value: 4.1E-5
score: 25.1
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 150..233
e-value: 2.3E-12
score: 48.6
NoneNo IPR availablePFAMPF13894zf-C2H2_4coord: 236..259
e-value: 2.1E-4
score: 21.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..42
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 123..177
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 123..145
NoneNo IPR availablePANTHERPTHR24379KRAB AND ZINC FINGER DOMAIN-CONTAININGcoord: 178..290
NoneNo IPR availablePANTHERPTHR24379:SF67BLOODY FINGERS-RELATEDcoord: 178..290
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 216..274
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 177..230

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:121171..122118 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6334.t1Gvermi6334.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_88 121171..122118 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6334.t1 ID=Gvermi6334.t1|Name=Gvermi6334.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=316bp
MPVHHPPPPYPHHYSHSLPSYSYPPPSPTARSQAPLTTVPPPPSQHYRSA
FTPASNALFEAIIAAEHASSNNPLTTVAALAAEQPRVPTAPTSSYSSPHP
AFPYSRFAPTAMPELSCYSSAQPPLMPPPPSSHVTVPPPNVATAVAPPMP
KRTGKRRTSPADSPPPSKQQKLPNDPKNGFHCGACGATFAMKRQRDHHVR
HEHERSFECTKCTSRFKTKSDANRHIRIVHDRIRPYACELCPRTFSERNK
LRRHCETVHQKLRPFACPGCTARFGELGNLRQHTGSLHPEIILDTAAIRS
RAAASMQSPHSQIQS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf