Gvermi6241.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6241.t1
Unique NameGvermi6241.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length223
Homology
BLAST of Gvermi6241.t1 vs. uniprot
Match: A0A2V3IVC1_9FLOR (Transcription initiation factor TFIID subunit 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVC1_9FLOR)

HSP 1 Score: 128 bits (322), Expect = 1.740e-30
Identity = 63/97 (64.95%), Postives = 75/97 (77.32%), Query Frame = 0
Query:    1 LEQIEDLVRDTDGCIVPGAKPMPTARLREGESAPPGVVAKNIAVPKDTGLDLTAPVDAKTVPQHAQIMKNPIALNLTRQKCKTMAYESPQQFLADMD 97
            LEQIE++VR T+G IVP    +  ARL++GES PPGV A N+AVPKDTGLD TAPVDAK VP + QI+KNP+ LNL RQKCK M YE+  QFL DM+
Sbjct: 1388 LEQIEEIVRSTEGYIVPNMSVIKIARLQDGESPPPGVTATNLAVPKDTGLDFTAPVDAKLVPTYTQIVKNPMYLNLVRQKCKKMTYETSAQFLTDME 1484          
BLAST of Gvermi6241.t1 vs. uniprot
Match: R7QJK0_CHOCR (Bromo domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJK0_CHOCR)

HSP 1 Score: 106 bits (264), Expect = 9.620e-23
Identity = 49/97 (50.52%), Postives = 69/97 (71.13%), Query Frame = 0
Query:    1 LEQIEDLVRDTDGCIVPGAKPMPTARLREGESAPPGVVAKNIAVPKDTGLDLTAPVDAKTVPQHAQIMKNPIALNLTRQKCKTMAYESPQQFLADMD 97
            LE++E  +R+T+G +      +  ARL++GES PPG +A N+A PK+TGLD TAPVD K VP + QI+K P+ LNL +QKCK +AY S  +F+ DM+
Sbjct: 1452 LEKVEKNIRETEGYVASQTPFLKIARLKDGESPPPGAIANNLAAPKNTGLDFTAPVDTKLVPTYKQIIKKPMYLNLIKQKCKRVAYRSAAEFIGDME 1548          
BLAST of Gvermi6241.t1 vs. uniprot
Match: A0A2V3IV33_9FLOR (Bromodomain adjacent to zinc finger domain protein 2A n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IV33_9FLOR)

HSP 1 Score: 74.7 bits (182), Expect = 9.340e-14
Identity = 34/62 (54.84%), Postives = 44/62 (70.97%), Query Frame = 0
Query:   36 GVVAKNIAVPKDTGLDLTAPVDAKTVPQHAQIMKNPIALNLTRQKCKTMAYESPQQFLADMD 97
            G+   N+A PKDTGL  TAPVD K VP + +++KN + LNL RQKCK M YE+ +QF  D+D
Sbjct:   38 GLATTNLAEPKDTGLYSTAPVDVKLVPMYTEVVKNKMYLNLIRQKCKKMTYETAEQFETDLD 99          
The following BLAST results are available for this feature:
BLAST of Gvermi6241.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IVC1_9FLOR1.740e-3064.95Transcription initiation factor TFIID subunit 1 n=... [more]
R7QJK0_CHOCR9.620e-2350.52Bromo domain-containing protein n=1 Tax=Chondrus c... [more]
A0A2V3IV33_9FLOR9.340e-1454.84Bromodomain adjacent to zinc finger domain protein... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036427Bromodomain-like superfamilyGENE3D1.20.920.10coord: 46..102
e-value: 3.2E-7
score: 32.0
IPR036427Bromodomain-like superfamilySUPERFAMILY47370Bromodomaincoord: 52..98
IPR001487BromodomainPFAMPF00439Bromodomaincoord: 55..100
e-value: 9.5E-5
score: 22.4
IPR001487BromodomainPROSITEPS50014BROMODOMAIN_2coord: 55..96
score: 9.4214
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 133..192

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:3470860..3471528 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6241.t1Gvermi6241.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_1708 3470860..3471528 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6241.t1 ID=Gvermi6241.t1|Name=Gvermi6241.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=223bp
LEQIEDLVRDTDGCIVPGAKPMPTARLREGESAPPGVVAKNIAVPKDTGL
DLTAPVDAKTVPQHAQIMKNPIALNLTRQKCKTMAYESPQQFLADMDWWC
QTRSCSAGKPTFSGWCSTRSCCWTWRKRAEEERRGHQGGRGDGKGGEGGG
ESIGEQGQDEEERRRRRRRGGGEGKGAAKGAVDVMQVEDQSDDVVEVTTN
RAKTVDVINLDASRADSIVGGD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036427Bromodomain-like_sf
IPR001487Bromodomain