Gvermi6240.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6240.t1
Unique NameGvermi6240.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length160
Homology
BLAST of Gvermi6240.t1 vs. uniprot
Match: A0A2V3IVC1_9FLOR (Transcription initiation factor TFIID subunit 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVC1_9FLOR)

HSP 1 Score: 162 bits (410), Expect = 2.880e-43
Identity = 83/103 (80.58%), Postives = 96/103 (93.20%), Query Frame = 0
Query:    1 MSSRVVTYARKNSAAEAAQTSKNAAGTAEADTVFLAPDEPPPVSAGDIDADGKPLSVIESHVHSAPCVKTETPPTEVLLVRNENKMFVRQIDSVIYVGVTKPK 103
            M+SRVVT+ARK+SAAEAAQ SKNAAGTAEADTVFLAPDEPPPV+AGDID+DGK LSVIESHV+SAPC KT TP T+ LLVRN+N+MFVR+IDSV+ VG+T+PK
Sbjct:  688 MASRVVTFARKDSAAEAAQASKNAAGTAEADTVFLAPDEPPPVNAGDIDSDGKHLSVIESHVYSAPCAKTTTPTTDFLLVRNDNEMFVREIDSVVSVGMTEPK 790          
BLAST of Gvermi6240.t1 vs. uniprot
Match: R7QJK0_CHOCR (Bromo domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJK0_CHOCR)

HSP 1 Score: 140 bits (354), Expect = 9.840e-36
Identity = 71/103 (68.93%), Postives = 88/103 (85.44%), Query Frame = 0
Query:    1 MSSRVVTYARKNSAAEAAQTSKNAAGTAEADTVFLAPDEPPPVSAGDIDADGKPLSVIESHVHSAPCVKTETPPTEVLLVRNENKMFVRQIDSVIYVGVTKPK 103
            M+SR+VTYARK+SAA AAQ SKNAAGT EADTVF+APDEPPP+ AGD++A+GKPLSV+ESHV +A CV+     T+ LLVRN  KM+VR+IDSV+ +GVT+PK
Sbjct:  759 MASRIVTYARKDSAAAAAQASKNAAGTPEADTVFMAPDEPPPLHAGDLEANGKPLSVVESHVFAAACVRQTAKTTDFLLVRNGGKMYVREIDSVVALGVTEPK 861          
BLAST of Gvermi6240.t1 vs. uniprot
Match: A0A7S1XFX4_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XFX4_9RHOD)

HSP 1 Score: 90.1 bits (222), Expect = 5.420e-18
Identity = 45/103 (43.69%), Postives = 69/103 (66.99%), Query Frame = 0
Query:    1 MSSRVVTYARKNSAAEAAQTSKNAAGTAEADTVFLAPDEPPPVSAGDIDADGKPLSVIESHVHSAPCVKTETPPTEVLLVRNENKMFVRQIDSVIYVGVTKPK 103
            M SR+VTY+R +S + A + + NA GT +ADTVF+AP++PPP+ AGDI  D  P+++I SH+  APCV      ++ L+ R   K + R+I  ++ VG+ +PK
Sbjct:  556 MVSRLVTYSRCSSVSAAMKAASNAVGTPDADTVFMAPEDPPPLRAGDILQDQPPVTMISSHIFDAPCVVQPPNSSDFLVCRKGGKFYFREIHGLVSVGMVEPK 658          
BLAST of Gvermi6240.t1 vs. uniprot
Match: A0A7S0ZBU9_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZBU9_9RHOD)

HSP 1 Score: 82.4 bits (202), Expect = 2.620e-15
Identity = 47/126 (37.30%), Postives = 71/126 (56.35%), Query Frame = 0
Query:    1 MSSRVVTYARKNSAAEAAQTSKNAAGTAEADTVFLAPDEPPPVSAGDI---DADGKP--------------------LSVIESHVHSAPCVKTETPPTEVLLVRNENKMFVRQIDSVIYVGVTKPK 103
            M+S+V  Y R  SA +AA  + NAAGTAEA+T++L PD+PPP+  GD+   D   KP                    +  +E+ + SAPC K      + L++R  ++M+VR ID+V+ VGV +P+
Sbjct:  578 MASKVTKYVRMRSATQAADAATNAAGTAEAETIYLRPDDPPPLHCGDVAYSDIPTKPHHNASQHQAHNKGNSRSFRSVHTVENSLFSAPCAKFNANSNDFLMIRKGDRMYVRGIDTVVSVGVVEPR 703          
The following BLAST results are available for this feature:
BLAST of Gvermi6240.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IVC1_9FLOR2.880e-4380.58Transcription initiation factor TFIID subunit 1 n=... [more]
R7QJK0_CHOCR9.840e-3668.93Bromo domain-containing protein n=1 Tax=Chondrus c... [more]
A0A7S1XFX4_9RHOD5.420e-1843.69Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S0ZBU9_9RHOD2.620e-1537.30Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 154..159
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
IPR022591Transcription initiation factor TFIID subunit 1, domain of unknown functionPFAMPF12157DUF3591coord: 1..103
e-value: 8.5E-10
score: 37.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:3470281..3470760 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6240.t1Gvermi6240.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_1708 3470281..3470760 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6240.t1 ID=Gvermi6240.t1|Name=Gvermi6240.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=160bp
MSSRVVTYARKNSAAEAAQTSKNAAGTAEADTVFLAPDEPPPVSAGDIDA
DGKPLSVIESHVHSAPCVKTETPPTEVLLVRNENKMFVRQIDSVIYVGVT
KPKSTGADKKGAKKADGGVALPVMDKQIQKISGEKGQIEKIKFSRQQINK
QKEHTSLKR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022591TFIID_sub1_DUF3591