Gvermi6216.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6216.t1
Unique NameGvermi6216.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length235
Homology
BLAST of Gvermi6216.t1 vs. uniprot
Match: A0A2V3IV60_9FLOR (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IV60_9FLOR)

HSP 1 Score: 345 bits (886), Expect = 2.450e-118
Identity = 184/235 (78.30%), Postives = 205/235 (87.23%), Query Frame = 0
Query:    1 MPSANKNARKRERAS-AHGASDALIPIRLDLTFDNRRIQETLTWNLLESQITPLMFATILADDLNLPDSARDAISEAITEQIASFVPPKQPRAECRHVVRLDLRVGRIVIRDQFEWDLSAHENSPEAFAERLCADLGLNSEHVPPVAHAIREQLLELAEFQDKRQKCAVLGDTDVVRKGGTERWQPEVECLSVEEQERLERKERREARLMRRNRGKAEVYSRPKSRRRSTSSRRR 234
            M S   N +KRER + A  +SDALIPIRLDLTFDNRR+QETLTWNLLE+QITPL FA+ILA DL+LPDSARD+I+E I EQI ++VP + P+ ECRHVVRLDLRVGRIVIRDQFEWDLS+ ENSPEAFAE LCADLGLN+EHVP VAHAIREQLLELAEFQDKRQ+C VL + DV+R  G E W+P VECL+VEEQERLERKERREARLMRRNRGKAEVY+ PKSRRRS SSRRR
Sbjct:    1 MVSNAANPKKRERPTVASASSDALIPIRLDLTFDNRRVQETLTWNLLETQITPLTFASILAADLSLPDSARDSIAETIKEQIEAYVPLRLPQKECRHVVRLDLRVGRIVIRDQFEWDLSSSENSPEAFAEALCADLGLNTEHVPHVAHAIREQLLELAEFQDKRQRCPVLHENDVIRIQGVEAWEPGVECLTVEEQERLERKERREARLMRRNRGKAEVYAFPKSRRRSISSRRR 235          
BLAST of Gvermi6216.t1 vs. uniprot
Match: R7QTW3_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QTW3_CHOCR)

HSP 1 Score: 263 bits (673), Expect = 1.030e-85
Identity = 144/230 (62.61%), Postives = 169/230 (73.48%), Query Frame = 0
Query:   10 KRERASAHGA--------SDALIPIRLDLTFDNRRIQETLTWNLLESQITPLMFATILADDLNLPDSARDAISEAITEQIASFVPP-KQPRAECRHVVRLDLRVGRIVIRDQFEWDLSAHENSPEAFAERLCADLGLNSEHVPPVAHAIREQLLELAEFQDKRQKCAVLGDTDVVRK-GGTERWQPEVECLSVEEQERLERKERREARLMRRNRGKAEVYSRPKSRRRST 229
            KR R S  G         ++ L+PIRLDL  D RR+QE+ TWNL E  +TP  FA  LA DL L DS RD I++A+ EQI++FVPP    + ECRHVV LDLR+GRIVIRDQFEWDL   +NSPEAFAERLCADLGLN EHV  VAHAIREQL+EL EF+DKRQ+C+VL + DVVR      RW+P V CL++EEQER+ERKE+REARL RRNRGKAE   R   RRRS+
Sbjct:   12 KRSRTSVEGEDVRNAGPQTEPLVPIRLDLNLDGRRVQESFTWNLREKHMTPKSFAAQLAYDLGLADSGRDEIADAMQEQISAFVPPPSSTKGECRHVVHLDLRIGRIVIRDQFEWDLHEPQNSPEAFAERLCADLGLNFEHVAAVAHAIREQLVELGEFRDKRQRCSVLTEGDVVRPVEELIRWEPAVTCLTLEEQERIERKEKREARLQRRNRGKAETNWRTPGRRRSS 241          
BLAST of Gvermi6216.t1 vs. uniprot
Match: M2X6H3_GALSU (SWI/SNF-related matrix-associated actin-dependent regulator ofchromatin subfamily B member 1 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2X6H3_GALSU)

HSP 1 Score: 150 bits (379), Expect = 2.010e-40
Identity = 82/170 (48.24%), Postives = 113/170 (66.47%), Query Frame = 0
Query:   55 FATILADDLNLPDSARDAISEAITEQIASFVPPKQPRAEC---RHVVRLDLRVGRIVIRDQFEWDLSAHENSPEAFAERLCADLGLNSEHVPPVAHAIREQLLELAEFQDKRQKCAVLGDTDVVRKGGT-ERWQPEVECLSVEEQERLERKERREARLMRRNRGKAEVYS 220
            FA  +  D +LP SA + I  +I EQ+A ++P + P  E    RH+++LD+R+G++V+RDQFEWD S  +NSPE FAE LC DLGL  E VP VAHAIREQL ELAE    R     +  + + RK  T  +WQP VE L+ ++ E+LER+E R+AR+ RRN+G+  + S
Sbjct:    4 FARTVVVDTSLPHSAEELIVSSIREQVAGYIPYRSPEEEIGERRHILKLDIRIGKVVLRDQFEWDRSNADNSPEEFAETLCKDLGLTREFVPAVAHAIREQLQELAEHPYTRCLQGSVPASGIYRKPETLSQWQPVVEILTDDQLEKLERRETRDARVARRNKGRESIRS 173          
BLAST of Gvermi6216.t1 vs. uniprot
Match: A0A4Z2BL62_9TELE (Uncharacterized protein n=1 Tax=Takifugu bimaculatus TaxID=433685 RepID=A0A4Z2BL62_9TELE)

HSP 1 Score: 130 bits (326), Expect = 4.640e-33
Identity = 76/194 (39.18%), Postives = 117/194 (60.31%), Query Frame = 0
Query:   21 DALIPIRLDLTFDNRRIQETLTWNLLESQITPLMFATILADDLNL-PDSARDAISEAITEQIASFVPPK--QPRAECRHVVRLDLRVGRIVIRDQFEWDLSAHENSPEAFAERLCADLGLNSEHVPPVAHAIREQLLELAEFQDKRQKCAVLGDTDVVRKGGTERWQPEVECLSVEEQERLERKERREARLMRR 211
            +AL+PIRLD+  D +++++T TWN+ E  +TP MFA IL DDL+L P +   AI+ AI +QI S+      + + + R +++L++ VG I + DQFEWD+S  ENSPE+FA +LC++LGL  E V  +A++IR QL          +      +  +   G  ++W P +E L+  E E+  R + R  R MRR
Sbjct:   84 EALVPIRLDMEIDGQKLRDTFTWNMNEKLMTPEMFAEILCDDLDLSPLAFVPAIASAIRQQIESYPTDTILEEQTDQRVIIKLNIHVGNISLMDQFEWDMSERENSPESFALKLCSELGLGGEFVTTIAYSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNTRRMRR 277          
BLAST of Gvermi6216.t1 vs. uniprot
Match: A0A669DEZ4_ORENI (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 n=12 Tax=Euteleostomi TaxID=117571 RepID=A0A669DEZ4_ORENI)

HSP 1 Score: 130 bits (328), Expect = 1.310e-32
Identity = 76/194 (39.18%), Postives = 118/194 (60.82%), Query Frame = 0
Query:   21 DALIPIRLDLTFDNRRIQETLTWNLLESQITPLMFATILADDLNL-PDSARDAISEAITEQIASFVPPK--QPRAECRHVVRLDLRVGRIVIRDQFEWDLSAHENSPEAFAERLCADLGLNSEHVPPVAHAIREQLLELAEFQDKRQKCAVLGDTDVVRKGGTERWQPEVECLSVEEQERLERKERREARLMRR 211
            +AL+P+RLD+  D +++++T TWN+ E  +TP MFA IL DDL+L P +   AI+ AI +QI S+      + +A+ R +++L++ VG I + DQFEWD+S  ENSPE+FA +LC++LGL  E V  +A++IR QL          +      +  +   G  ++W P +E L+  E E+  R + R  R MRR
Sbjct:  167 EALVPVRLDMEIDGQKLRDTFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIESYPTDSLLEDQADQRVIIKLNIHVGNISLVDQFEWDMSERENSPESFALKLCSELGLGGEFVTTIAYSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNTRRMRR 360          
BLAST of Gvermi6216.t1 vs. uniprot
Match: A0A7N8XK66_9TELE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-like n=1 Tax=Mastacembelus armatus TaxID=205130 RepID=A0A7N8XK66_9TELE)

HSP 1 Score: 129 bits (324), Expect = 2.900e-32
Identity = 76/194 (39.18%), Postives = 117/194 (60.31%), Query Frame = 0
Query:   21 DALIPIRLDLTFDNRRIQETLTWNLLESQITPLMFATILADDLNL-PDSARDAISEAITEQIASFVPPK--QPRAECRHVVRLDLRVGRIVIRDQFEWDLSAHENSPEAFAERLCADLGLNSEHVPPVAHAIREQLLELAEFQDKRQKCAVLGDTDVVRKGGTERWQPEVECLSVEEQERLERKERREARLMRR 211
            +AL+PIRLD+  D +++++  TWN+ E  +TP MFA IL DDL+L P +   AI+ AI +QI S+      + +A+ R +++L++ VG I + DQFEWD+S  ENSPE+FA +LC++LGL  E V  +A++IR QL          +      +  +   G  ++W P +E L+  E E+  R + R  R MRR
Sbjct:  138 EALVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIESYPTDSILEEQADQRVIIKLNIHVGNISLVDQFEWDMSERENSPESFALKLCSELGLGGEFVTTIAYSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNTRRMRR 331          
BLAST of Gvermi6216.t1 vs. uniprot
Match: A0A3Q2Y4L0_HIPCM (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 n=12 Tax=Clupeocephala TaxID=186625 RepID=A0A3Q2Y4L0_HIPCM)

HSP 1 Score: 129 bits (325), Expect = 3.590e-32
Identity = 75/194 (38.66%), Postives = 116/194 (59.79%), Query Frame = 0
Query:   21 DALIPIRLDLTFDNRRIQETLTWNLLESQITPLMFATILADDLNL-PDSARDAISEAITEQIASFVPPK--QPRAECRHVVRLDLRVGRIVIRDQFEWDLSAHENSPEAFAERLCADLGLNSEHVPPVAHAIREQLLELAEFQDKRQKCAVLGDTDVVRKGGTERWQPEVECLSVEEQERLERKERREARLMRR 211
            + L+PIRLD+  D +++++  TWN+ E  +TP MFA IL DDL+L P +   AI+ A+ +QI S+        +A+ R +++L++ VG I + DQFEWD+S HENSPE+FA +LC++LGL  E V  +A++IR QL          +      +  +   G  ++W P +E L+  E E+  R + R  R MRR
Sbjct:  167 EVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLTFVPAITSAVRQQIESYPTDSILDEQADQRVIIKLNIHVGNISLVDQFEWDMSEHENSPESFALKLCSELGLGGEFVTTIAYSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNTRRMRR 360          
BLAST of Gvermi6216.t1 vs. uniprot
Match: G3Q368_GASAC (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 n=3 Tax=Gasterosteidae TaxID=69291 RepID=G3Q368_GASAC)

HSP 1 Score: 129 bits (325), Expect = 4.070e-32
Identity = 80/200 (40.00%), Postives = 121/200 (60.50%), Query Frame = 0
Query:   21 DALIPIRLDLTFDNRRIQETLTWNLLESQITPLMFATILADDLNL-PDSARDAISEAITEQIASFVPPK--QPRAECRHVVRLDLRVGRIVIRDQFEWDLSAHENSPEAFAERLCADLGLNSEHVPPVAHAIREQLLELAEFQDKRQKCA----VLGDTDVVRK--GGTERWQPEVECLSVEEQERLERKERREARLMRR 211
            +AL+PIRLD+  D +++++  TWN+ E  +TP MFA IL DDL+L P +   AI+ AI +QI S+      + +A+ R +++L++ VG I + DQFEWD+S  ENSPE+FA +LC+DLGL  E V  +A++IR QL           +CA     L   ++  +  G  ++W P +E L+  E E+  R + R  R MRR
Sbjct:  168 EALVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIESYPTDSILEEQADQRVIIKLNIHVGNISLVDQFEWDMSERENSPESFALKLCSDLGLGGEFVTTIAYSIRGQLSWHQRTYAFSLQCAHSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNTRRMRR 367          
BLAST of Gvermi6216.t1 vs. uniprot
Match: A0A7N9AUR5_9TELE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 n=4 Tax=Percomorphaceae TaxID=1489872 RepID=A0A7N9AUR5_9TELE)

HSP 1 Score: 129 bits (324), Expect = 5.890e-32
Identity = 76/194 (39.18%), Postives = 117/194 (60.31%), Query Frame = 0
Query:   21 DALIPIRLDLTFDNRRIQETLTWNLLESQITPLMFATILADDLNL-PDSARDAISEAITEQIASFVPPK--QPRAECRHVVRLDLRVGRIVIRDQFEWDLSAHENSPEAFAERLCADLGLNSEHVPPVAHAIREQLLELAEFQDKRQKCAVLGDTDVVRKGGTERWQPEVECLSVEEQERLERKERREARLMRR 211
            +AL+PIRLD+  D +++++  TWN+ E  +TP MFA IL DDL+L P +   AI+ AI +QI S+      + +A+ R +++L++ VG I + DQFEWD+S  ENSPE+FA +LC++LGL  E V  +A++IR QL          +      +  +   G  ++W P +E L+  E E+  R + R  R MRR
Sbjct:  176 EALVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIESYPTDSILEEQADQRVIIKLNIHVGNISLVDQFEWDMSERENSPESFALKLCSELGLGGEFVTTIAYSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNTRRMRR 369          
BLAST of Gvermi6216.t1 vs. uniprot
Match: Q9PU60_DANRE (SWI/SNF-related matrix associated protein (Fragment) n=2 Tax=Gnathostomata TaxID=7776 RepID=Q9PU60_DANRE)

HSP 1 Score: 125 bits (315), Expect = 6.540e-32
Identity = 76/199 (38.19%), Postives = 118/199 (59.30%), Query Frame = 0
Query:   20 SDALIPIRLDLTFDNRRIQETLTWNLLESQITPLMFATILADDLNL-PDSARDAISEAITEQIASFVPPK--QPRAECRHVVRLDLRVGRIVIRDQFEWDLSAHENSPEAFAERLCADLGLNSEHVPPVAHAIREQLL----ELAEFQDKRQKCAVLGDTDVVRKGGTERWQPEVECLSVEEQERLERKERREARLMRR 211
            ++ L+PIRLD+  D +++++  TWN+ E  +TP MFA IL DDL+L P +   AI+ AI +QI S+      + + + R +++L++ VG I + DQFEWD+S  ENSPE+FA +LC++LGL  E V  +A++IR QL       A   D  +      +  +   G  ++W P +E L+  E E+  R + R  R MRR
Sbjct:   33 AEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLTFVPAIASAIRQQIESYPTDSILEEQTDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPESFALKLCSELGLGGEFVTTIAYSIRGQLSWHQRTYAFRSDFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNTRRMRR 231          
The following BLAST results are available for this feature:
BLAST of Gvermi6216.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IV60_9FLOR2.450e-11878.30SWI/SNF-related matrix-associated actin-dependent ... [more]
R7QTW3_CHOCR1.030e-8562.61Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
M2X6H3_GALSU2.010e-4048.24SWI/SNF-related matrix-associated actin-dependent ... [more]
A0A4Z2BL62_9TELE4.640e-3339.18Uncharacterized protein n=1 Tax=Takifugu bimaculat... [more]
A0A669DEZ4_ORENI1.310e-3239.18SWI/SNF-related matrix-associated actin-dependent ... [more]
A0A7N8XK66_9TELE2.900e-3239.18SWI/SNF-related matrix-associated actin-dependent ... [more]
A0A3Q2Y4L0_HIPCM3.590e-3238.66SWI/SNF-related matrix-associated actin-dependent ... [more]
G3Q368_GASAC4.070e-3240.00SWI/SNF-related matrix-associated actin-dependent ... [more]
A0A7N9AUR5_9TELE5.890e-3239.18SWI/SNF-related matrix-associated actin-dependent ... [more]
Q9PU60_DANRE6.540e-3238.19SWI/SNF-related matrix associated protein (Fragmen... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 191..212
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 205..224
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 205..234
NoneNo IPR availablePANTHERPTHR10019SNF5coord: 14..217
NoneNo IPR availablePANTHERPTHR10019:SF5SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY B MEMBER 1coord: 14..217
IPR006939SNF5/SMARCB1/INI1PFAMPF04855SNF5coord: 89..207
e-value: 3.1E-26
score: 92.6
coord: 21..84
e-value: 8.9E-16
score: 58.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:3305141..3305845 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6216.t1Gvermi6216.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_1708 3305141..3305845 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6216.t1 ID=Gvermi6216.t1|Name=Gvermi6216.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=235bp
MPSANKNARKRERASAHGASDALIPIRLDLTFDNRRIQETLTWNLLESQI
TPLMFATILADDLNLPDSARDAISEAITEQIASFVPPKQPRAECRHVVRL
DLRVGRIVIRDQFEWDLSAHENSPEAFAERLCADLGLNSEHVPPVAHAIR
EQLLELAEFQDKRQKCAVLGDTDVVRKGGTERWQPEVECLSVEEQERLER
KERREARLMRRNRGKAEVYSRPKSRRRSTSSRRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006939SNF5