Gvermi6136.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6136.t1
Unique NameGvermi6136.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length160
Homology
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BLAST of Gvermi6136.t1 vs. uniprot
Match: A0A2V3IE34_9FLOR (Mediator of RNA polymerase II transcription subunit 22 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IE34_9FLOR)

HSP 1 Score: 196 bits (498), Expect = 1.230e-61
Identity = 95/158 (60.13%), Postives = 118/158 (74.68%), Query Frame = 0 
Query:    1 MTSRSHGRAAAVPLAHDPTPQRTAPTARELRDRFHDRLDTEIDRVLTAFQDLVASCQVSDRTSNARAEYQTHVEASNLATSADHLLNLISHLKIAAVTQNVTEAKAESQSVQSRMANTKKEVSAHMFKLADGVSSTLSRLENHYYSSCTAWYPTDDDP 158
            MTSRSH + A +P+ HDPTPQRT PTA ELR+ +H+RLDTEIDR +TAFQDL+ASC++SDRTSNARAEYQT VEA+NLA SAD LL LIS LKIAA+TQN+ E K+E++++Q     T +++   +  L D  + TL  LE HYY S T WYP    P
Sbjct:    1 MTSRSHNQGATLPIGHDPTPQRTIPTAVELRETYHNRLDTEIDRAMTAFQDLIASCEISDRTSNARAEYQTQVEAANLANSADQLLRLISELKIAAITQNIPEIKSENRTMQVFFDQTGRKMLKEILTLRDETAKTLRLLEKHYYESSTTWYPDQPSP 158
The following BLAST results are available for this feature:
BLAST of Gvermi6136.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IE34_9FLOR1.230e-6160.13Mediator of RNA polymerase II transcription subuni... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 101..121
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
IPR009332Mediator of RNA polymerase II transcription subunit 22PFAMPF06179Med22coord: 36..133
e-value: 7.3E-12
score: 45.4
IPR009332Mediator of RNA polymerase II transcription subunit 22PANTHERPTHR12434MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 22coord: 20..148

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:2668070..2668549 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6136.t1Gvermi6136.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_1708 2668070..2668549 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6136.t1 ID=Gvermi6136.t1|Name=Gvermi6136.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=160bp
MTSRSHGRAAAVPLAHDPTPQRTAPTARELRDRFHDRLDTEIDRVLTAFQ
DLVASCQVSDRTSNARAEYQTHVEASNLATSADHLLNLISHLKIAAVTQN
VTEAKAESQSVQSRMANTKKEVSAHMFKLADGVSSTLSRLENHYYSSCTA
WYPTDDDPN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009332Med22