Gvermi6045.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6045.t1
Unique NameGvermi6045.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length548
Homology
BLAST of Gvermi6045.t1 vs. uniprot
Match: A0A2V3J1M1_9FLOR (PsbB mRNA maturation factor Mbb1, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1M1_9FLOR)

HSP 1 Score: 243 bits (619), Expect = 1.100e-69
Identity = 389/543 (71.64%), Postives = 414/543 (76.24%), Query Frame = 0
Query:    6 AFIVPALPSHSLPRRSAALFSPTKLLHYRVRKLPQRTSVEGIVRTQV-STGLPSVFVASCTLTKTDDGRLAAPRDGTREALELLYESAKAEEKAGRVHSAMRMYESLVKLNTSNGRAWVRYVKLLQRDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSWLSFAQLEEYEGNSDMARKYYSKGTAIKGRNAVQLWQXXXXXXXXXXXXPEALQIYQQAVNVYPNDAMLYCSWGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGKEVAALIHAWAALEWEEGHIEKARELFKKAVGVDKSCSWLWLWFGRFELANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGDEERARFMFRRAAELESSRELFEMDPESPLRRPWRKL 547
            AF+V A P  +   R+  L S TK    R RK P RT+VE  +RT++ S+   SV V S TLTKT +G++A PRDGTREALELLYESAKAEE AGRV +A+RMYESLVKLN +NGR WVRYVKLL+RDG               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                             +GR AVQLWQXXXXXXXXXXXX           +VYPNDAMLYCS  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  SRGKE AAL+HAWA LEWE+G++E+ARELF+KAV VD+SCSWLWLWFGRFELAN                                 VGDEERARFMFRRAA+LESSRELFEMDPESPLRRPWRKL
Sbjct:    5 AFVVSAFPIPAPHTRAFPLSSFTKHERVRPRKQPLRTTVERRLRTELTSSNASSVSVTSATLTKTGEGQVAPPRDGTREALELLYESAKAEENAGRVCNALRMYESLVKLNANNGRVWVRYVKLLERDGQYGRVTDVLKRALRYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGRTAVQLWQXXXXXXXXXXXXXXXXXXXXXXXSVYPNDAMLYCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVSRGKETAALLHAWAVLEWEKGNVEQARELFRKAVAVDRSCSWLWLWFGRFELANGNLSVARHYISRSINLDPADGSPWRAWAELERGVGDEERARFMFRRAAQLESSRELFEMDPESPLRRPWRKL 547          
BLAST of Gvermi6045.t1 vs. uniprot
Match: R7QPX8_CHOCR (TPR repeat-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPX8_CHOCR)

HSP 1 Score: 175 bits (444), Expect = 1.180e-44
Identity = 331/471 (70.28%), Postives = 349/471 (74.10%), Query Frame = 0
Query:   77 PRDGTREALELLYESAKAEEKAGRVHSAMRMYESLVKLNTSNGRAWVRYVKLLQRDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSWLSFAQLEEYEGNSDMARKYYSKGTAIKGRNAVQLWQXXXXXXXXXXXXPEALQIYQQAVNVYPNDAMLYCSWGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGKEVAALIHAWAALEWEEGHIEKARELFKKAVGVDKSCSWLWLWFGRFELANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGDEERARFMFRRAAELESSRELFEMDPESPLRRPWRKL 547
            P  GTREALELLYESAK EEKAGRV +A+ MYESLV+L+TSNGRAWVRY  +LQR G               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                           +I GR+AVQLWQ              A+ +Y++A   YP+D MLYC   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     S+GKE AAL HAWAA+EWE    EKARELF +AV VD  CSWLWLWF RFE+A+                                 VGDEE+ARFMFRRAAELESSRELFEMDPESPLRRPWRKL
Sbjct:   73 PEQGTREALELLYESAKTEEKAGRVTNALGMYESLVQLDTSNGRAWVRYATVLQRGGETNRAREVLRRALKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSITGRSAVQLWQAWARMEEKSGNLHGAISLYRRAATAYPDDPMLYCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGSKASKGKERAALFHAWAAMEWESEREEKARELFGEAVKVDDKCSWLWLWFARFEIAHNNISVARHYISRSINLDPKDSSPWRAWAELERSVGDEEQARFMFRRAAELESSRELFEMDPESPLRRPWRKL 543          
BLAST of Gvermi6045.t1 vs. uniprot
Match: A0A7S2ZYH1_9RHOD (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZYH1_9RHOD)

HSP 1 Score: 106 bits (264), Expect = 1.340e-20
Identity = 104/253 (41.11%), Postives = 137/253 (54.15%), Query Frame = 0
Query:  290 LSWLSFAQLEEYEGNSDMARKYYSKGTAIKGRNAVQLWQXXXXXXXXXXXXPEALQIYQQAVNVYPNDAMLYCSWGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGKEVAALIHAWAALEWEEGHIEKARELFKKAVGVDKSCSWLWLWFGRFELANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGDEERARFMFRRAAELESSRELFEMDPESPLRR 542
            ++WL++AQLEE +G  D+AR+YY  G+ I     + L  XXXXXXXX     +A+ IY +A+     DA+LY  +G                                                          G++VA L+HAWAA EW+E     ARE+F++AV VD++C WLW+WFGRFEL      XXXXXXXXXXXXXXXXXXXXXXXXXXXXX          ++RA EL++ +EL++ DP+ PL R
Sbjct:  307 MAWLTWAQLEELQGQKDVARRYYRIGSEINSAGNITLXXXXXXXXXXLGHEEDAIWIYSEAIARGFADALLYNEYGLLLRKVGRRRDAIEVFRRGLGVDEHCSQLYKSIALGLVEDGSIAQARRVFSVGERKGIGRDVAKLLHAWAAAEWQEQEKATAREIFQRAVKVDRTCGWLWMWFGRFELEEENFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYQRANELDTRKELYDCDPDHPLAR 559          
BLAST of Gvermi6045.t1 vs. uniprot
Match: A0A7S1TEB8_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TEB8_9RHOD)

HSP 1 Score: 97.8 bits (242), Expect = 7.840e-18
Identity = 80/245 (32.65%), Postives = 102/245 (41.63%), Query Frame = 0
Query:  306 DMARKYYSKGT-AIKGRNAVQLWQXXXXXXXXXXXXPEALQIYQQAVNVYPNDAMLYCSWGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGKEVAALIHAWAALEWEEGHIEKARELFKKAVGVDKSCSWLWLWFGRF--ELANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGDEERARFMFRRAAELESSRELFEMDPESPLRRPWRKL 547
            D ARK Y +    + GR  VQL  XXXXXXXXXXXX     I    + +YP D +LYC+ G                                                          G ++ +L+H+WA  EW++G  ++A +LFK AV +D  C WLWLWFGRF  E                                     G+EERA+F FRRAAELE+ R L  +D E PL RPWR +
Sbjct:  289 DAARKVYKQACRTMGGRGVVQLXXXXXXXXXXXXXXXXXXXIVNDGLELYPKDQLLYCTAGELSEKKGDIHQARSYYIKGIAVDDSFPYLYQRLASLEQSQLRDEIARQLYMLGSKKGEGDDMVSLLHSWAVFEWKKGKRQEAHKLFKDAVLLDPKCGWLWLWFGRFIAEEGPESYPLARHFLSRSINSDPKESASWKSLAELERAAGNEERAKFYFRRAAELENRRALDVIDLERPLARPWRDI 533          
The following BLAST results are available for this feature:
BLAST of Gvermi6045.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3J1M1_9FLOR1.100e-6971.64PsbB mRNA maturation factor Mbb1, chloroplastic n=... [more]
R7QPX8_CHOCR1.180e-4470.28TPR repeat-containing protein n=1 Tax=Chondrus cri... [more]
A0A7S2ZYH1_9RHOD1.340e-2041.11Hypothetical protein n=3 Tax=Rhodosorus marinus Ta... [more]
A0A7S1TEB8_9RHOD7.840e-1832.65Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 119..152
e-value: 320.0
score: 1.7
coord: 358..391
e-value: 14.0
score: 13.8
coord: 462..495
e-value: 200.0
score: 3.6
coord: 187..220
e-value: 23.0
score: 11.8
coord: 255..288
e-value: 0.043
score: 23.0
coord: 324..357
e-value: 0.038
score: 23.1
coord: 153..186
e-value: 34.0
score: 10.3
coord: 85..118
e-value: 110.0
score: 5.7
coord: 392..425
e-value: 430.0
score: 0.6
coord: 428..461
e-value: 93.0
score: 6.4
coord: 289..322
e-value: 23.0
score: 11.8
coord: 221..254
e-value: 4.8
score: 16.2
IPR019734Tetratricopeptide repeatPFAMPF13174TPR_6coord: 324..356
e-value: 0.014
score: 16.1
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 255..288
score: 9.7059
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 358..391
score: 8.6144
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 119..152
score: 8.2899
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 324..357
score: 9.5879
IPR003107HAT (Half-A-TPR) repeatSMARTSM00386hat_new_1coord: 235..267
e-value: 360.0
score: 4.0
coord: 167..199
e-value: 22.0
score: 12.9
coord: 476..508
e-value: 290.0
score: 4.7
coord: 338..370
e-value: 47.0
score: 10.5
coord: 269..301
e-value: 1.6
score: 17.7
coord: 99..131
e-value: 60.0
score: 9.7
coord: 442..474
e-value: 1.9
score: 17.5
coord: 133..165
e-value: 1.1E-4
score: 31.6
coord: 303..336
e-value: 0.011
score: 24.9
coord: 372..404
e-value: 0.011
score: 25.0
coord: 201..233
e-value: 210.0
score: 5.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 322..542
e-value: 1.0E-32
score: 115.5
coord: 73..321
e-value: 8.7E-45
score: 155.3
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 85..325
NoneNo IPR availablePFAMPF13432TPR_16coord: 235..287
e-value: 0.0032
score: 18.0
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..16
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 17..547
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..12
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 331..527
IPR044624Tetratricopeptide-like repeat protein Mbb1-likePANTHERPTHR44917PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107coord: 91..219
coord: 431..525
coord: 217..442

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:1859751..1861394 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6045.t1Gvermi6045.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_1708 1859751..1861394 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6045.t1 ID=Gvermi6045.t1|Name=Gvermi6045.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=548bp
MAELLAFIVPALPSHSLPRRSAALFSPTKLLHYRVRKLPQRTSVEGIVRT
QVSTGLPSVFVASCTLTKTDDGRLAAPRDGTREALELLYESAKAEEKAGR
VHSAMRMYESLVKLNTSNGRAWVRYVKLLQRDGEIERATGVLKRALRYNP
RNAILWQAWADFEKKNGNFVTARRLFRKAFEANPQLPSLYHSWGSMEYKD
GRADEARRLYQQGLRMCPTATRLYHALGVLNDKKGNSKSARIILTQGLKL
EPDNPHLHHALGVLEFRAGRVAAARECFTRAIRVDPRHTLSWLSFAQLEE
YEGNSDMARKYYSKGTAIKGRNAVQLWQAFARMEEKLGNKPEALQIYQQA
VNVYPNDAMLYCSWGKLVESRGDIATARSLFKKGIEVDPTKAYLWQSLAL
LEQRQLDKHSARAFFAKGVAVSRGKEVAALIHAWAALEWEEGHIEKAREL
FKKAVGVDKSCSWLWLWFGRFELANGNVSIARHYISRSINLDPTDGSPWR
AWAELERGVGDEERARFMFRRAAELESSRELFEMDPESPLRRPWRKL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR003107HAT
IPR011990TPR-like_helical_dom_sf
IPR044624Mbb1-like