Gvermi6020.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6020.t1
Unique NameGvermi6020.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length642
Homology
BLAST of Gvermi6020.t1 vs. uniprot
Match: A0A2V3IEJ4_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEJ4_9FLOR)

HSP 1 Score: 692 bits (1785), Expect = 5.010e-242
Identity = 351/643 (54.59%), Postives = 439/643 (68.27%), Query Frame = 0
Query:    1 MPSVRQPPTSKRRRSAEKSARRFSLKDSRKQPILPTSHAAARKPASALTVVRVXXXXXXXXXXXXXXXXXXXXXXXXXXXPPLPRVGALVRAVDDTGPE-ADAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGPHEQKPVATAPHAALH---------ELRQQPVSMEEPNEGIQWYTRSDYMDGNRPMCRVSKPYLLSNGTILVPAWMANYQKLLDRCGLGKHGFYP-LTGPEGLHNVETIDADFALTIHPERFQEPTHVPAVFLTEHLLKSSFLFDVFGGTASVPDGVTEHYCYTTASESKCEQPRPARAGMKPAIFVPRRIENAPSDSWSRKYVDMFGIAHGHGQGVVHLNTSSLLNKEHEGQSDNVYGTRFRTIMVTPGMFRHLPDGSLGHGSLFSHKNGIDKSSNQKGSEACSVAIGIATGKDTASHGMEGASDLKDKIEELAKYAMPEASIDVKTVDIGPEVDLDSHIKEMQTLDLFVAGSGDDMSSIGFLRSRSTAVELMPFALQPVVHKNLARILGIHYESFRSKPNDDDFKRCIDGEIFSLRKRGQLDLTGKPDWFQPLMKAWDEAVRQYALSGSSDFDIISADKTVNNYHSRACALKQRIEIAVDDIARRIINTVKESCS 632
            MPSVRQPPTSKRRRS+EK+ RRFS+KDSRKQPILPT H  +RK     T VR+                               R      +  D G E  +                                              E +    + HA+L          E ++ P  ME  +E I+WY+R DYM+G+RP+CR+SKPY+LSNGTIL+P W+++++K+LDRCGLG HGFY   TGP+GL     IDAD  LT+HPERFQEPTHVP+V+LTEH+LKSS+LF VFGG+    DG+ EH+CYTTASE+KC++ RPA   +KPAIFVP RIE AP   WSRKYV++ G AHG+G G+ HLNTSSLL K H+GQ +++ GTRFR++M+TPGMFRHLPD  L     FS K GI K    K S  CS+ IGIATGK+ + HG+EG SDLKDKIEEL KYA+PE S++VK++D+GP++  D H+K+MQ LD+++AGSGDDMSSIGFL S++++ ELMPFA +P+VHKNLARILG+ Y SF SKP D DFKRCIDGEIFSLRKRGQL L+ KPDW+ PLMKAW++AV+ YALSGSSDFDII A+K VNNYHSRACALKQR+E+  D+IAR+++  VKE C+
Sbjct:    1 MPSVRQPPTSKRRRSSEKNGRRFSVKDSRKQPILPTFHTGSRKSNLTFTFVRIMAVAAMAILIISVSSMIRRAARSRNFTS---RYIVPSGSKGDKGNEQTEIPKAESDGTDGNDQAKSVSSDDDVKTDVTSDASAPSADETNTKADEEGQDNVQSGHASLENSNDAGESSEQKKVPY-MERASEYIEWYSRDDYMEGSRPICRISKPYVLSNGTILLPDWLSSHEKVLDRCGLGNHGFYSGSTGPQGLSTQNEIDADLVLTVHPERFQEPTHVPSVYLTEHILKSSYLFGVFGGSVRSVDGIGEHHCYTTASETKCDESRPAPDQLKPAIFVPTRIEQAPEGCWSRKYVELLGDAHGNGNGIRHLNTSSLLIKSHKGQIEDLMGTRFRSVMMTPGMFRHLPDNGLKMSRFFSMKTGIHKELESKSSGKCSITIGIATGKEGSPHGIEGGSDLKDKIEELGKYALPEVSLEVKSIDVGPDISFDDHVKQMQILDMYIAGSGDDMSSIGFLHSQASSFELMPFASKPLVHKNLARILGLQYMSFSSKPQDGDFKRCIDGEIFSLRKRGQLPLSEKPDWYAPLMKAWNDAVKDYALSGSSDFDIIGAEKPVNNYHSRACALKQRVEVETDEIARKLVQAVKEKCN 639          
BLAST of Gvermi6020.t1 vs. uniprot
Match: R7QJ50_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJ50_CHOCR)

HSP 1 Score: 486 bits (1252), Expect = 1.250e-164
Identity = 231/423 (54.61%), Postives = 311/423 (73.52%), Query Frame = 0
Query:  212 MANYQKLLDRCGLGKHGFYPLT-GPEGLHNVETIDADFALTIHPERFQEPTHVPAVFLTEHLLKSSFLFDVFGGTASVPDGVTEHYCYTTASESKCEQPRPARAGMKPAIFVPRRIENAPSDSWSRKYVDMFGIAHGHGQGVVHLNTSSLLNKEHEGQSDNVYGTRFRTIMVTPGMFRHLPDGSLGHGSLFSHKNGIDKSSNQKG-SEACSVAIGIATGKDTASHGMEGASDLKDKIEELAKYAMPEASIDVKTVDIGPEVDLDSHIKEMQTLDLFVAGSGDDMSSIGFLRSRSTAVELMPFALQPVVHKNLARILGIHYESFRSKPNDDDFKRCIDGEIFSLRKRGQLDLTGKPDWFQPLMKAWDEAVRQYALSGSSDFDIISADKTVNNYHSRACALKQRIEIAVDDIARRIINTVKESCS 632
            M +Y+KLL RCGLG H +Y    GPEGL +++ + ADF LTIHPERFQEPTHV +V+LTEH+LKSS+LFDVFGG A   + V EH+CYT+  +S C  PRP    +KPAIFVP+RIEN P+  WS++ +DM G AHGHGQ ++HLN S++L KEH+G+ +N+ GT FR+IM T GMFRHLP   L H +++S KN IDKS  ++  + AC++ IGIA+  D    G++G  DL++KIE ++K A+P ++I+ KT+       L  HIKEMQ LD+FV GSGD+MSS+GFLRS+S A+ELMPF ++P  H+++AR+LGI Y + R KP D  FK C++GEIF+LRK+G L  T  PDW +P +KAWD AV ++ LSGSS FD+++A + VNNY++R CA KQ IE+A+DD AR+I    KE C+
Sbjct:    1 MRDYEKLLKRCGLGTHSYYSSQKGPEGLASIQDVGADFVLTIHPERFQEPTHVASVYLTEHILKSSYLFDVFGGDAQFVEEVKEHHCYTSEKDSTCALPRPVHTILKPAIFVPKRIENGPNALWSKQLLDMLGKAHGHGQDLIHLNASTVLLKEHKGELENLIGTGFRSIMTTDGMFRHLPTNGLQHSNMYSLKNRIDKSPKEREVNGACAITIGIASSHDRDG-GIQGVDDLREKIEAVSKLAIPGSAIEAKTIIFSSVGSLQDHIKEMQQLDIFVGGSGDEMSSMGFLRSKSVAIELMPFGIKPNTHESMARVLGIGYNNIRGKPQDS-FKNCLEGEIFNLRKKGTLSYTELPDWEEPTVKAWDAAVGEFVLSGSSAFDVLTAQRPVNNYYARVCAQKQNIEVAIDDTARKIAAMAKEKCT 421          
The following BLAST results are available for this feature:
BLAST of Gvermi6020.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IEJ4_9FLOR5.010e-24254.59Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QJ50_CHOCR1.250e-16454.61Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..173
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 98..112
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 10..28
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 50..70
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..49
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 71..641
NoneNo IPR availableTMHMMTMhelixcoord: 48..70

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:1800154..1802079 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6020.t1Gvermi6020.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_1708 1800154..1802079 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6020.t1 ID=Gvermi6020.t1|Name=Gvermi6020.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=642bp
MPSVRQPPTSKRRRSAEKSARRFSLKDSRKQPILPTSHAAARKPASALTV
VRVVAAAAVALLVFSAFSMLRRMRPSRPFAPPLPRVGALVRAVDDTGPEA
DAQPDAHSKPPDGAEAPRGLAEQHAAANADVDAPPASDARPDSDGPHEQK
PVATAPHAALHELRQQPVSMEEPNEGIQWYTRSDYMDGNRPMCRVSKPYL
LSNGTILVPAWMANYQKLLDRCGLGKHGFYPLTGPEGLHNVETIDADFAL
TIHPERFQEPTHVPAVFLTEHLLKSSFLFDVFGGTASVPDGVTEHYCYTT
ASESKCEQPRPARAGMKPAIFVPRRIENAPSDSWSRKYVDMFGIAHGHGQ
GVVHLNTSSLLNKEHEGQSDNVYGTRFRTIMVTPGMFRHLPDGSLGHGSL
FSHKNGIDKSSNQKGSEACSVAIGIATGKDTASHGMEGASDLKDKIEELA
KYAMPEASIDVKTVDIGPEVDLDSHIKEMQTLDLFVAGSGDDMSSIGFLR
SRSTAVELMPFALQPVVHKNLARILGIHYESFRSKPNDDDFKRCIDGEIF
SLRKRGQLDLTGKPDWFQPLMKAWDEAVRQYALSGSSDFDIISADKTVNN
YHSRACALKQRIEIAVDDIARRIINTVKESCSTPQTQGSDQ*
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