Gvermi6020.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6020.t1
Unique Name	Gvermi6020.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	642

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_1708	contig	ScGOVlb_1708:1800154..1802079 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6020	Gvermi6020	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_1708 1800154..1802079 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6020.t1.start1	Gvermi6020.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_1708 1800154..1800156 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6020.t1.CDS1	Gvermi6020.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_1708 1800154..1802079 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6020.t1.exon1	Gvermi6020.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_1708 1800154..1802079 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6020.t1.stop1	Gvermi6020.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_1708 1802077..1802079 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6020.t1	Gvermi6020.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_1708 1800154..1802079 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_1708:1800154..1802079+
coding sequence from alignment at ScGOVlb_1708:1800154..1802079+

mRNA sequence

>Gvermi6020.t1 ID=Gvermi6020.t1|Name=Gvermi6020.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=642bp
MPSVRQPPTSKRRRSAEKSARRFSLKDSRKQPILPTSHAAARKPASALTV
VRVVAAAAVALLVFSAFSMLRRMRPSRPFAPPLPRVGALVRAVDDTGPEA
DAQPDAHSKPPDGAEAPRGLAEQHAAANADVDAPPASDARPDSDGPHEQK
PVATAPHAALHELRQQPVSMEEPNEGIQWYTRSDYMDGNRPMCRVSKPYL
LSNGTILVPAWMANYQKLLDRCGLGKHGFYPLTGPEGLHNVETIDADFAL
TIHPERFQEPTHVPAVFLTEHLLKSSFLFDVFGGTASVPDGVTEHYCYTT
ASESKCEQPRPARAGMKPAIFVPRRIENAPSDSWSRKYVDMFGIAHGHGQ
GVVHLNTSSLLNKEHEGQSDNVYGTRFRTIMVTPGMFRHLPDGSLGHGSL
FSHKNGIDKSSNQKGSEACSVAIGIATGKDTASHGMEGASDLKDKIEELA
KYAMPEASIDVKTVDIGPEVDLDSHIKEMQTLDLFVAGSGDDMSSIGFLR
SRSTAVELMPFALQPVVHKNLARILGIHYESFRSKPNDDDFKRCIDGEIF
SLRKRGQLDLTGKPDWFQPLMKAWDEAVRQYALSGSSDFDIISADKTVNN
YHSRACALKQRIEIAVDDIARRIINTVKESCSTPQTQGSDQ*

spliced messenger RNA

>Gvermi6020.t1 ID=Gvermi6020.t1|Name=Gvermi6020.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1926bp|location=Sequence derived from alignment at ScGOVlb_1708:1800154..1802079+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCTCGGTTCGACAGCCGCCCACCAGCAAGCGCCGCCGCTCGGCGGA
GAAGAGCGCCCGCCGCTTTTCGCTCAAGGACTCTCGCAAGCAGCCCATTC
TGCCCACGTCCCACGCCGCCGCCCGCAAGCCCGCCTCCGCCCTCACCGTC
GTGCGCGTAGTGGCCGCGGCCGCCGTCGCCCTGCTCGTCTTCTCGGCCTT
CTCCATGCTGCGCCGCATGCGCCCTTCGCGCCCGTTCGCCCCGCCGCTCC
CGCGCGTCGGCGCGCTTGTGCGCGCCGTCGACGACACCGGCCCCGAAGCC
GACGCCCAGCCCGACGCCCACAGCAAGCCCCCCGACGGCGCCGAGGCGCC
GCGCGGCCTCGCGGAACAGCACGCAGCCGCAAACGCCGACGTCGACGCGC
CGCCTGCCAGCGACGCTCGCCCCGATAGCGACGGCCCGCACGAGCAAAAG
CCCGTCGCCACAGCGCCGCATGCCGCGCTCCACGAGCTACGCCAACAACC
AGTGTCCATGGAGGAGCCGAACGAGGGCATACAGTGGTACACTCGCAGCG
ACTACATGGACGGCAATCGCCCCATGTGCCGCGTGAGCAAGCCGTACCTG
CTGAGCAATGGCACCATACTGGTGCCGGCGTGGATGGCAAACTACCAAAA
GCTTCTCGATCGGTGCGGACTCGGAAAACACGGCTTCTACCCGCTGACGG
GGCCCGAAGGCCTGCACAACGTGGAAACGATTGACGCCGACTTTGCTCTC
ACAATCCACCCGGAACGCTTTCAGGAGCCCACGCATGTGCCGGCGGTCTT
TCTCACAGAACACCTTCTCAAATCCAGTTTCCTCTTCGACGTGTTCGGGG
GGACAGCGAGCGTCCCTGACGGCGTCACTGAACATTATTGCTACACGACG
GCCTCGGAGTCCAAATGTGAGCAGCCCAGACCGGCGAGAGCTGGCATGAA
ACCAGCCATATTTGTTCCTCGTCGCATCGAGAATGCACCTTCCGACTCGT
GGTCTCGAAAGTACGTAGACATGTTCGGCATCGCCCACGGCCATGGACAA
GGAGTTGTTCATCTGAACACGTCTTCACTCCTCAACAAGGAGCACGAGGG
ACAGAGCGACAACGTCTATGGAACTCGATTCAGAACCATTATGGTTACTC
CCGGAATGTTCCGCCACTTGCCGGATGGCAGTCTAGGCCACGGCAGTCTC
TTCTCCCACAAAAACGGTATCGACAAGTCTTCCAATCAAAAGGGCTCCGA
GGCATGCTCGGTGGCCATCGGGATCGCAACTGGAAAGGACACCGCGTCCC
ACGGGATGGAAGGCGCTTCGGATCTCAAGGATAAGATCGAGGAGCTTGCC
AAGTACGCCATGCCTGAAGCCTCCATCGACGTCAAGACTGTTGACATCGG
GCCAGAGGTCGATTTGGATTCCCATATCAAGGAGATGCAGACATTGGACC
TGTTCGTGGCTGGAAGTGGAGACGATATGAGCAGTATCGGGTTTCTACGT
TCGCGATCCACAGCAGTGGAGCTTATGCCCTTTGCACTCCAACCAGTTGT
CCATAAGAATCTCGCGAGGATTCTTGGAATTCACTACGAAAGCTTCAGAA
GCAAGCCAAATGACGACGATTTCAAGAGATGTATCGATGGGGAGATCTTT
AGTCTGCGCAAAAGGGGGCAACTTGATTTAACTGGAAAACCAGATTGGTT
TCAACCGTTGATGAAAGCCTGGGATGAAGCAGTGAGACAGTACGCTCTCT
CAGGTTCCTCGGACTTTGATATTATAAGTGCCGATAAAACAGTGAACAAT
TATCACTCACGAGCGTGCGCGCTAAAGCAGCGTATTGAGATTGCAGTAGA
CGACATCGCGAGAAGGATAATCAACACCGTCAAAGAATCGTGCTCGACAC
CTCAAACACAGGGGAGTGACCAATGA

protein sequence of Gvermi6020.t1

>Gvermi6020.t1 ID=Gvermi6020.t1|Name=Gvermi6020.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=642bp
MPSVRQPPTSKRRRSAEKSARRFSLKDSRKQPILPTSHAAARKPASALTV
VRVVAAAAVALLVFSAFSMLRRMRPSRPFAPPLPRVGALVRAVDDTGPEA
DAQPDAHSKPPDGAEAPRGLAEQHAAANADVDAPPASDARPDSDGPHEQK
PVATAPHAALHELRQQPVSMEEPNEGIQWYTRSDYMDGNRPMCRVSKPYL
LSNGTILVPAWMANYQKLLDRCGLGKHGFYPLTGPEGLHNVETIDADFAL
TIHPERFQEPTHVPAVFLTEHLLKSSFLFDVFGGTASVPDGVTEHYCYTT
ASESKCEQPRPARAGMKPAIFVPRRIENAPSDSWSRKYVDMFGIAHGHGQ
GVVHLNTSSLLNKEHEGQSDNVYGTRFRTIMVTPGMFRHLPDGSLGHGSL
FSHKNGIDKSSNQKGSEACSVAIGIATGKDTASHGMEGASDLKDKIEELA
KYAMPEASIDVKTVDIGPEVDLDSHIKEMQTLDLFVAGSGDDMSSIGFLR
SRSTAVELMPFALQPVVHKNLARILGIHYESFRSKPNDDDFKRCIDGEIF
SLRKRGQLDLTGKPDWFQPLMKAWDEAVRQYALSGSSDFDIISADKTVNN
YHSRACALKQRIEIAVDDIARRIINTVKESCSTPQTQGSDQ*

mRNA from alignment at ScGOVlb_1708:1800154..1802079+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6020.t1 ID=Gvermi6020.t1|Name=Gvermi6020.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1926bp|location=Sequence derived from alignment at ScGOVlb_1708:1800154..1802079+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCTCGGTTCGACAGCCGCCCACCAGCAAGCGCCGCCGCTCGGCGGA
GAAGAGCGCCCGCCGCTTTTCGCTCAAGGACTCTCGCAAGCAGCCCATTC
TGCCCACGTCCCACGCCGCCGCCCGCAAGCCCGCCTCCGCCCTCACCGTC
GTGCGCGTAGTGGCCGCGGCCGCCGTCGCCCTGCTCGTCTTCTCGGCCTT
CTCCATGCTGCGCCGCATGCGCCCTTCGCGCCCGTTCGCCCCGCCGCTCC
CGCGCGTCGGCGCGCTTGTGCGCGCCGTCGACGACACCGGCCCCGAAGCC
GACGCCCAGCCCGACGCCCACAGCAAGCCCCCCGACGGCGCCGAGGCGCC
GCGCGGCCTCGCGGAACAGCACGCAGCCGCAAACGCCGACGTCGACGCGC
CGCCTGCCAGCGACGCTCGCCCCGATAGCGACGGCCCGCACGAGCAAAAG
CCCGTCGCCACAGCGCCGCATGCCGCGCTCCACGAGCTACGCCAACAACC
AGTGTCCATGGAGGAGCCGAACGAGGGCATACAGTGGTACACTCGCAGCG
ACTACATGGACGGCAATCGCCCCATGTGCCGCGTGAGCAAGCCGTACCTG
CTGAGCAATGGCACCATACTGGTGCCGGCGTGGATGGCAAACTACCAAAA
GCTTCTCGATCGGTGCGGACTCGGAAAACACGGCTTCTACCCGCTGACGG
GGCCCGAAGGCCTGCACAACGTGGAAACGATTGACGCCGACTTTGCTCTC
ACAATCCACCCGGAACGCTTTCAGGAGCCCACGCATGTGCCGGCGGTCTT
TCTCACAGAACACCTTCTCAAATCCAGTTTCCTCTTCGACGTGTTCGGGG
GGACAGCGAGCGTCCCTGACGGCGTCACTGAACATTATTGCTACACGACG
GCCTCGGAGTCCAAATGTGAGCAGCCCAGACCGGCGAGAGCTGGCATGAA
ACCAGCCATATTTGTTCCTCGTCGCATCGAGAATGCACCTTCCGACTCGT
GGTCTCGAAAGTACGTAGACATGTTCGGCATCGCCCACGGCCATGGACAA
GGAGTTGTTCATCTGAACACGTCTTCACTCCTCAACAAGGAGCACGAGGG
ACAGAGCGACAACGTCTATGGAACTCGATTCAGAACCATTATGGTTACTC
CCGGAATGTTCCGCCACTTGCCGGATGGCAGTCTAGGCCACGGCAGTCTC
TTCTCCCACAAAAACGGTATCGACAAGTCTTCCAATCAAAAGGGCTCCGA
GGCATGCTCGGTGGCCATCGGGATCGCAACTGGAAAGGACACCGCGTCCC
ACGGGATGGAAGGCGCTTCGGATCTCAAGGATAAGATCGAGGAGCTTGCC
AAGTACGCCATGCCTGAAGCCTCCATCGACGTCAAGACTGTTGACATCGG
GCCAGAGGTCGATTTGGATTCCCATATCAAGGAGATGCAGACATTGGACC
TGTTCGTGGCTGGAAGTGGAGACGATATGAGCAGTATCGGGTTTCTACGT
TCGCGATCCACAGCAGTGGAGCTTATGCCCTTTGCACTCCAACCAGTTGT
CCATAAGAATCTCGCGAGGATTCTTGGAATTCACTACGAAAGCTTCAGAA
GCAAGCCAAATGACGACGATTTCAAGAGATGTATCGATGGGGAGATCTTT
AGTCTGCGCAAAAGGGGGCAACTTGATTTAACTGGAAAACCAGATTGGTT
TCAACCGTTGATGAAAGCCTGGGATGAAGCAGTGAGACAGTACGCTCTCT
CAGGTTCCTCGGACTTTGATATTATAAGTGCCGATAAAACAGTGAACAAT
TATCACTCACGAGCGTGCGCGCTAAAGCAGCGTATTGAGATTGCAGTAGA
CGACATCGCGAGAAGGATAATCAACACCGTCAAAGAATCGTGCTCGACAC
CTCAAACACAGGGGAGTGACCAATGA

Coding sequence (CDS) from alignment at ScGOVlb_1708:1800154..1802079+

>Gvermi6020.t1 ID=Gvermi6020.t1|Name=Gvermi6020.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1926bp|location=Sequence derived from alignment at ScGOVlb_1708:1800154..1802079+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCTCGGTTCGACAGCCGCCCACCAGCAAGCGCCGCCGCTCGGCGGA
GAAGAGCGCCCGCCGCTTTTCGCTCAAGGACTCTCGCAAGCAGCCCATTC
TGCCCACGTCCCACGCCGCCGCCCGCAAGCCCGCCTCCGCCCTCACCGTC
GTGCGCGTAGTGGCCGCGGCCGCCGTCGCCCTGCTCGTCTTCTCGGCCTT
CTCCATGCTGCGCCGCATGCGCCCTTCGCGCCCGTTCGCCCCGCCGCTCC
CGCGCGTCGGCGCGCTTGTGCGCGCCGTCGACGACACCGGCCCCGAAGCC
GACGCCCAGCCCGACGCCCACAGCAAGCCCCCCGACGGCGCCGAGGCGCC
GCGCGGCCTCGCGGAACAGCACGCAGCCGCAAACGCCGACGTCGACGCGC
CGCCTGCCAGCGACGCTCGCCCCGATAGCGACGGCCCGCACGAGCAAAAG
CCCGTCGCCACAGCGCCGCATGCCGCGCTCCACGAGCTACGCCAACAACC
AGTGTCCATGGAGGAGCCGAACGAGGGCATACAGTGGTACACTCGCAGCG
ACTACATGGACGGCAATCGCCCCATGTGCCGCGTGAGCAAGCCGTACCTG
CTGAGCAATGGCACCATACTGGTGCCGGCGTGGATGGCAAACTACCAAAA
GCTTCTCGATCGGTGCGGACTCGGAAAACACGGCTTCTACCCGCTGACGG
GGCCCGAAGGCCTGCACAACGTGGAAACGATTGACGCCGACTTTGCTCTC
ACAATCCACCCGGAACGCTTTCAGGAGCCCACGCATGTGCCGGCGGTCTT
TCTCACAGAACACCTTCTCAAATCCAGTTTCCTCTTCGACGTGTTCGGGG
GGACAGCGAGCGTCCCTGACGGCGTCACTGAACATTATTGCTACACGACG
GCCTCGGAGTCCAAATGTGAGCAGCCCAGACCGGCGAGAGCTGGCATGAA
ACCAGCCATATTTGTTCCTCGTCGCATCGAGAATGCACCTTCCGACTCGT
GGTCTCGAAAGTACGTAGACATGTTCGGCATCGCCCACGGCCATGGACAA
GGAGTTGTTCATCTGAACACGTCTTCACTCCTCAACAAGGAGCACGAGGG
ACAGAGCGACAACGTCTATGGAACTCGATTCAGAACCATTATGGTTACTC
CCGGAATGTTCCGCCACTTGCCGGATGGCAGTCTAGGCCACGGCAGTCTC
TTCTCCCACAAAAACGGTATCGACAAGTCTTCCAATCAAAAGGGCTCCGA
GGCATGCTCGGTGGCCATCGGGATCGCAACTGGAAAGGACACCGCGTCCC
ACGGGATGGAAGGCGCTTCGGATCTCAAGGATAAGATCGAGGAGCTTGCC
AAGTACGCCATGCCTGAAGCCTCCATCGACGTCAAGACTGTTGACATCGG
GCCAGAGGTCGATTTGGATTCCCATATCAAGGAGATGCAGACATTGGACC
TGTTCGTGGCTGGAAGTGGAGACGATATGAGCAGTATCGGGTTTCTACGT
TCGCGATCCACAGCAGTGGAGCTTATGCCCTTTGCACTCCAACCAGTTGT
CCATAAGAATCTCGCGAGGATTCTTGGAATTCACTACGAAAGCTTCAGAA
GCAAGCCAAATGACGACGATTTCAAGAGATGTATCGATGGGGAGATCTTT
AGTCTGCGCAAAAGGGGGCAACTTGATTTAACTGGAAAACCAGATTGGTT
TCAACCGTTGATGAAAGCCTGGGATGAAGCAGTGAGACAGTACGCTCTCT
CAGGTTCCTCGGACTTTGATATTATAAGTGCCGATAAAACAGTGAACAAT
TATCACTCACGAGCGTGCGCGCTAAAGCAGCGTATTGAGATTGCAGTAGA
CGACATCGCGAGAAGGATAATCAACACCGTCAAAGAATCGTGCTCGACAC
CTCAAACACAGGGGAGTGACCAATGA